Microarray experiments to specifically-expressed genes

GSM ID GSM133264
Assay name RIKEN-GODA3B-6
GSE experiment GSE5696: AtGenExpress: Effect of brassinosteroids in seedlings

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
104.699.954.4At4g28850829006xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putativeF:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, apoplast, cell wall;PFBOO.I.C.G.H.G.
88.599.950.9At4g13390826970proline-rich extensin-like family proteinF:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFPOBVAO.I.C.G.H.G.
60.099.8190.6At5g06640830552proline-rich extensin-like family proteinF:structural constituent of cell wall;P:plant-type cell wall organization;C:unknown;MFPOBVAO.I.C.G.H.G.
58.999.824.9At3g60280825199UCC3 (UCLACYANIN 3)Encodes blue copper-binding protein III.O.I.C.G.H.G.
53.499.8104.5At1g54970841938ATPRP1 (PROLINE-RICH PROTEIN 1)encodes a proline-rich protein that is specifically expressed in the root.O.I.C.G.H.G.
48.399.869.4At1g34510840353peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOO.I.C.G.H.G.
45.199.855.3At5g57540835858xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putativeF:hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, apoplast, cell wall;PFBOO.I.C.G.H.G.
43.699.8175.6At5g06630830551proline-rich extensin-like family proteinF:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFPOBVAO.I.C.G.H.G.
41.999.884.2At5g57530835857xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putativeF:hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process, cellular glucan metabolic process;C:cell wall, cytoplasm;PFBOO.I.C.G.H.G.
40.099.884.6At3g54580824623proline-rich extensin-like family proteinF:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFBPOVAO.I.C.G.H.G.
39.999.8243.8At3g54590824624ATHRGP1 (HYDROXYPROLINE-RICH GLYCOPROTEIN)Encodes a hydroxyproline-rich glycoprotein.O.I.C.G.H.G.
39.399.8190.8At2g24980817037proline-rich extensin-like family proteinF:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFPOBVAO.I.C.G.H.G.
37.699.736.0At2g20520816574FLA6 (FASCICLIN-LIKE ARABINOGALACTAN 6)fasciclin-like arabinogalactan-protein 6 (Fla6)O.I.C.G.H.G.
35.899.724.3At1g203903766766transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
34.799.744.8At4g19680827712IRT2encodes an iron transporter whose expression is induced by iron and zinc deficiency. Gene is specifically expressed in the external cell layers of the root subapical zone.O.I.C.G.H.G.
33.699.717.6At4g26460828752-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
32.799.744.8At5g22410832302peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOO.I.C.G.H.G.
27.799.785.6At4g08410826400proline-rich extensin-like family proteinF:structural constituent of cell wall;P:plant-type cell wall organization;C:unknown;MFPOBVAO.I.C.G.H.G.
27.199.7176.6At4g26010828707peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOO.I.C.G.H.G.
26.999.7182.9At3g62680825442PRP3 (PROLINE-RICH PROTEIN 3)Proline-rich proteinO.I.C.G.H.G.
25.499.675.1At4g40090830172AGP3 (arabinogalactan-protein 3)F:unknown;P:multicellular organismal development;C:endomembrane system;PO.I.C.G.H.G.
23.899.617.7At2g43150818917proline-rich extensin-like family proteinF:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MPBFOVAO.I.C.G.H.G.
23.699.627.7At4g25220828625transporter, putativeF:transporter activity;P:transport;C:unknown;BOFMAPO.I.C.G.H.G.
23.699.619.1At2g25240817062serine-type endopeptidase inhibitorF:serine-type endopeptidase inhibitor activity;P:biological_process unknown;C:cellular_component unknown;MVBPOAFO.I.C.G.H.G.
22.699.651.8At5g15780831434pollen Ole e 1 allergen and extensin family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBPOFVAO.I.C.G.H.G.
22.499.629.8At1g12950837853MATE efflux family proteinF:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMAO.I.C.G.H.G.
21.399.6114.0At4g25820828687XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9)Encodes a xyloglucan endotransglycosylase with a clear preference for non-fucosylated xyloglucan polymer.O.I.C.G.H.G.
20.499.623.7At3g22800821851leucine-rich repeat family protein / extensin family proteinF:structural constituent of cell wall, protein binding;P:unknown;C:endomembrane system;MPBOFVAO.I.C.G.H.G.
20.099.6115.9At5g67400836876peroxidase 73 (PER73) (P73) (PRXR11)F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOO.I.C.G.H.G.
19.999.6165.6At4g02270828083pollen Ole e 1 allergen and extensin family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
19.899.675.8At5g05500830433pollen Ole e 1 allergen and extensin family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
19.199.656.6At5g35190833473proline-rich extensin-like family proteinF:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFPOBVAO.I.C.G.H.G.
19.099.5110.8At1g23720838982proline-rich extensin-like family proteinF:structural constituent of cell wall;P:plant-type cell wall organization;C:unknown;MBFOPVAO.I.C.G.H.G.
18.899.5231.3At3g07430819931emb1990 (embryo defective 1990)F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:chloroplast, chloroplast envelope;BOPO.I.C.G.H.G.
18.399.520.1At5g19800832100hydroxyproline-rich glycoprotein family proteinF:unknown;P:biological_process unknown;C:endomembrane system;MPOFBVAO.I.C.G.H.G.
16.999.552.9At5g04960830378pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMOO.I.C.G.H.G.
16.299.5101.1At5g19890832111peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:nucleus, cytoplasm;PFOBO.I.C.G.H.G.
16.099.5170.3At1g05240839237peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:plant-type cell wall;PFOBO.I.C.G.H.G.
15.799.5164.3At3g16670820919unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:endomembrane system;PO.I.C.G.H.G.
15.699.528.0At3g10710820240pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMO.I.C.G.H.G.
15.599.5207.5At4g33030829440SQD1involved in sulfolipid biosynthesisO.I.C.G.H.G.
15.599.58.7At5g43590834379patatin, putativeF:nutrient reservoir activity;P:metabolic process, lipid metabolic process;C:cellular_component unknown;PBOMFVO.I.C.G.H.G.
15.399.4116.4At1g30870839971cationic peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOMO.I.C.G.H.G.
14.699.434.7At3g16660820918unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPMOO.I.C.G.H.G.
14.299.422.5At5g04230830302PAL3 (PHENYL ALANINE AMMONIA-LYASE 3)Member of Phenylalanine ammonialyase (PAL) gene family.Differs significantly from PAL1 and PAL2 and other sequenced plant PAL genesO.I.C.G.H.G.
13.399.443.7At3g28550822485proline-rich extensin-like family proteinF:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MPFBOVAO.I.C.G.H.G.
13.199.414.7At1g70460843382protein kinase, putativeF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:membrane;MBOPFVAO.I.C.G.H.G.
12.899.313.8At1g69240843255MES15 (METHYL ESTERASE 15)Encodes a protein predicted to act as a carboxylesterase. It has similarity to the SABP2 methyl salicylate esterase from tobacco but no enzymatic activity has been identified for this protein.O.I.C.G.H.G.
12.399.330.8At4g25790828684allergen V5/Tpx-1-related family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOBVAO.I.C.G.H.G.
11.999.332.1At1g73830843719BEE3 (BR ENHANCED EXPRESSION 3)F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFMBOO.I.C.G.H.G.
11.799.3182.0At4g33720829514pathogenesis-related protein, putativeF:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOBO.I.C.G.H.G.
11.799.311.8At4g29180829039leucine-rich repeat protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
11.699.310.2At3g59340825103unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;OMBFPAO.I.C.G.H.G.
11.399.311.6At3g01730821089unknown proteinF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PO.I.C.G.H.G.
11.199.2136.6At5g17820831650peroxidase 57 (PER57) (P57) (PRXR10)F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:cell wall, membrane, plant-type cell wall;PFOMO.I.C.G.H.G.
11.099.2262.9At3g05730819742-Encodes a defensin-like (DEFL) family protein.O.I.C.G.H.G.
10.999.297.1At3g59930825163-Encodes a defensin-like (DEFL) family protein.O.I.C.G.H.G.
10.899.273.6At5g03540831809ATEXO70A1 (exocyst subunit EXO70 family protein A1)AtEXO70A1 is a member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into nine clusters on the phylogenetic treeO.I.C.G.H.G.
10.899.210.8At3g51540824317unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBVPAO.I.C.G.H.G.
10.799.216.1At4g30320829155allergen V5/Tpx-1-related family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOBO.I.C.G.H.G.
10.599.286.4At1g43800840977acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putativeF:acyl-[acyl-carrier-protein] desaturase activity, oxidoreductase activity, transition metal ion binding;P:fatty acid metabolic process, fatty acid biosynthetic process;C:membrane;PBOMO.I.C.G.H.G.
10.399.232.7At1g12040837756LRX1 (LEUCINE-RICH REPEAT/EXTENSIN 1)encodes a a chimeric leucine-rich repeat/extensin protein that regulates root hair morphogenesis and elongation. Null mutants develop root hairs that frequently abort, swell, or branch. Gene is expressed in root hair cells and protein is specifically localized in the wall of the hair proper.O.I.C.G.H.G.
10.399.210.2At5g61350836256protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
10.199.261.0At1g14210837982ribonuclease T2 family proteinF:ribonuclease T2 activity, endoribonuclease activity, RNA binding;P:response to salt stress;C:endomembrane system;PFMBOVO.I.C.G.H.G.
10.199.247.5At1g56430842096NAS4 (NICOTIANAMINE SYNTHASE 4)F:nicotianamine synthase activity;P:nicotianamine biosynthetic process;C:cellular_component unknown;PFABOO.I.C.G.H.G.
9.899.1203.1At1g63940842697monodehydroascorbate reductase, putativeF:ATP binding;P:response to cadmium ion, response to cold;C:mitochondrion, stromule, chloroplast stroma, chloroplast;BOMFAPO.I.C.G.H.G.
9.799.1149.5At3g44990823634XTR8 (XYLOGLUCAN ENDO-TRANSGLYCOSYLASE-RELATED 8)xyloglucan endo-transglycosylaseO.I.C.G.H.G.
9.799.119.6At4g34580829610COW1 (CAN OF WORMS1)Encodes COW1 (can of worms1), a phosphatidylinositol transfer protein essential for root hair tip growth. The N-terminus of the COW1 protein is 32% identical to an essential phosphatidylinositol transfer protein (PITP), the yeast Sec14 protein (sec14p) while the C-terminus is 34.5% identical to a late nodulin of Lotus japonicus, Nlj16. Expression of COW1 complements the growth defect associated with Sec14p dysfunction in yeast. GFP fused to the COW1 protein specifically accumulates at the site of root hair outgrowth.O.I.C.G.H.G.
9.699.154.5At1g23090838917AST91 (SULFATE TRANSPORTER 91)Encodes AST91 mRNA for sulfate transporter.O.I.C.G.H.G.
9.599.137.4At1g24530839068transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:plasma membrane, heterotrimeric G-protein complex;MFOBPAO.I.C.G.H.G.
9.399.15.0At1g34540840356CYP94D1member of CYP94DO.I.C.G.H.G.
9.299.115.5At2g44110819017MLO15 (MILDEW RESISTANCE LOCUS O 15)A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO15 belongs to the clade II, with ATMLO13 and ATMLO15. The gene is expressed during early seedling growth, in root tips and flower (papillae, anthers and pollen grains), as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).O.I.C.G.H.G.
9.099.1107.6At5g53450835426ORG1 (OBP3-responsive gene 1)F:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;PMOFBO.I.C.G.H.G.
9.099.134.2At2g23620816894MES1 (METHYL ESTERASE 1)Encodes a protein shown to have carboxylesterase activity, methyl salicylate esterase activity, methyl jasmonate esterase activity, and methyl IAA esterase activity in vitro. MES1 appears to be involved in MeSA hydrolysis in planta. Expression of MES1 can restore systemic acquired resistance in SAR-deficient tobacco plants. This protein does not act on MeGA4, or MEGA9 in vitro.O.I.C.G.H.G.
8.899.039.3At3g49960824158peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOO.I.C.G.H.G.
8.899.037.5At5g57850835895aminotransferase class IV family proteinF:4-amino-4-deoxychorismate lyase activity, catalytic activity;P:tetrahydrofolate biosynthetic process;C:chloroplast;BOAPFO.I.C.G.H.G.
8.899.06.5At5g01060831916protein kinase family proteinF:binding, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:cellular_component unknown;PMOBFVAO.I.C.G.H.G.
8.799.05.0At1g62320842530early-responsive to dehydration protein-related / ERD protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;FPMOO.I.C.G.H.G.
8.699.0115.4At5g23020832366IMS2 (2-ISOPROPYLMALATE SYNTHASE 2)methylthioalkymalate synthase-like. Also known as 2-isopropylmalate synthase (IMS2). encodes a methylthioalkylmalate synthase involved in the biosynthesis of aliphatic glucosinolates which accepts all the omega-methylthio-2-oxoalkanoic acids needed to form the known C3 to C8 glucosinolates in Arabidopsis.O.I.C.G.H.G.



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