Microarray experiments to specifically-expressed genes

GSM ID GSM133130
Assay name S0_8H_B
GSE experiment GSE5688: AtGenExpress: Response to sulfate limitation

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
60.099.8408.0At1g08090837327ATNRT2:1 (NITRATE TRANSPORTER 2:1)High-affinity nitrate transporter. Up-regulated by nitrate. Functions as a repressor of lateral root initiation independently of nitrate uptake.O.I.C.G.H.G.
59.099.8225.9At3g59930825163-Encodes a defensin-like (DEFL) family protein.O.I.C.G.H.G.
52.599.8169.1At5g48010834852THAS1 (THALIANOL SYNTHASE 1)Encodes an oxidosqualene cyclase involved in the biosynthesis of thalianol, a tricyclic triterpenoid of unknown function. Overexpression of THAS leads to dwarfing in the aerial tissues of Arabidopsis plants, but increases their root length. THAS is part of a small operon-like cluster of genes (with At5g48000 (THAH) and At5g47990 (THAD)) involved in thalianol metabolism.O.I.C.G.H.G.
45.599.8100.8At2g32270817787ZIP3A member of Zrt- and Irt-related protein (ZIP) family. transcript is induced in response to zinc deficiency in the root. also response to iron deficiency.O.I.C.G.H.G.
45.099.8307.2At1g21310838728ATEXT3 (EXTENSIN 3)Encodes extensin 3.O.I.C.G.H.G.
44.299.846.8At5g48070834859XTH20 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 20)putative xyloglucan endotransglycosylase/hydrolase, expressed primarily in the stele of mature non-elongating regions of both the main and the lateral root. Is expressed in lateral root primordia but expression ceases after lateral root begins to grow.O.I.C.G.H.G.
43.499.826.8At2g19060816423GDSL-motif lipase/hydrolase family proteinF:lipase activity, hydrolase activity, acting on ester bonds;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
40.099.844.3At5g14650831317polygalacturonase, putative / pectinase, putativeF:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAO.I.C.G.H.G.
38.799.872.4At5g38030833782MATE efflux family proteinF:antiporter activity, drug transporter activity, transporter activity;P:response to nematode;C:membrane;BOPFAMO.I.C.G.H.G.
34.499.721.3At2g43150818917proline-rich extensin-like family proteinF:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MPBFOVAO.I.C.G.H.G.
31.299.765.0At2g29660817516zinc finger (C2H2 type) family proteinF:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:anchored to membrane;PFOO.I.C.G.H.G.
29.499.7281.5At2g05440815093glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVAO.I.C.G.H.G.
28.599.739.0At1g30840839967ATPUP4Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.O.I.C.G.H.G.
28.499.784.0At3g24290822017AMT1F:ammonium transmembrane transporter activity;P:ammonium transport, transport;C:endomembrane system, membrane;OBMFPAO.I.C.G.H.G.
28.199.7112.3At2g03090814838ATEXPA15 (ARABIDOPSIS THALIANA EXPANSIN A15)member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.O.I.C.G.H.G.
26.399.741.9At5g10170830881MIPS3 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 3)myo-inositol-1-phosphate synthase isoform 3.Expressed in leaf, root and silique. Immunolocaliazation experiments with an antibody recognizing MIPS1, MIPS2, and MIPS3 showed endosperm localization.O.I.C.G.H.G.
26.299.711.8At2g22920816823serine carboxypeptidase S10 family proteinF:serine-type carboxypeptidase activity;P:proteolysis;C:plant-type cell wall;PMFBOO.I.C.G.H.G.
25.599.7126.3At4g28250828940ATEXPB3 (ARABIDOPSIS THALIANA EXPANSIN B3)putative beta-expansin/allergen protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.O.I.C.G.H.G.
25.299.6133.3At5g06630830551proline-rich extensin-like family proteinF:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFPOBVAO.I.C.G.H.G.
24.899.6170.6At5g26260832695meprin and TRAF homology domain-containing protein / MATH domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;POFO.I.C.G.H.G.
24.799.618.8At3g47980823953integral membrane HPP family proteinF:molecular_function unknown;P:biological_process unknown;C:integral to membrane, chloroplast;BOFPO.I.C.G.H.G.
24.699.6126.2At1g23720838982proline-rich extensin-like family proteinF:structural constituent of cell wall;P:plant-type cell wall organization;C:unknown;MBFOPVAO.I.C.G.H.G.
23.099.660.6At3g45710823713proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport;C:membrane;PBMOFAO.I.C.G.H.G.
22.799.6117.3At5g06640830552proline-rich extensin-like family proteinF:structural constituent of cell wall;P:plant-type cell wall organization;C:unknown;MFPOBVAO.I.C.G.H.G.
22.399.681.0At5g37990833778S-adenosylmethionine-dependent methyltransferase/ methyltransferaseF:S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity;P:biological_process unknown;C:endomembrane system;POBMFO.I.C.G.H.G.
21.099.624.4At1g78120844148tetratricopeptide repeat (TPR)-containing proteinF:binding;P:unknown;C:mitochondrion;MOBFPAO.I.C.G.H.G.
20.899.636.9At1g72140843545proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport, response to nematode;C:plasma membrane, membrane;BPMOFO.I.C.G.H.G.
20.699.656.1At1g141208379712-oxoglutarate-dependent dioxygenase, putativeF:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;POBFMO.I.C.G.H.G.
20.599.646.7At3g01260821171aldose 1-epimerase/ carbohydrate binding / catalytic/ isomeraseF:carbohydrate binding, isomerase activity, aldose 1-epimerase activity, catalytic activity;P:galactose metabolic process, hexose metabolic process, carbohydrate metabolic process;C:endomembrane system;OBMFPVAO.I.C.G.H.G.
20.499.613.5At3g59340825103unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;OMBFPAO.I.C.G.H.G.
20.399.638.6At1g01190839233CYP78A8member of CYP78AO.I.C.G.H.G.
20.299.662.3At2g22510816784hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POMBVFAO.I.C.G.H.G.
19.999.657.3At5g25810832650tny (TINY)encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family (TINY). The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. Ectopic or overexpression of this gene in a Ds tagged line has reduced cell expansion. The expression of this gene is induced by ethylene and light and appears to stimulate cytokinin biosynthesis.O.I.C.G.H.G.
19.899.621.6At3g61380825310unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;OMPFBVO.I.C.G.H.G.
19.599.675.0At5g38020833781S-adenosyl-L-methionine:carboxyl methyltransferase family proteinencodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus)O.I.C.G.H.G.
19.299.615.7At1g77520844088O-methyltransferase family 2 proteinF:O-methyltransferase activity;P:lignin biosynthetic process;C:cytosol;PBFOMO.I.C.G.H.G.
19.199.671.0At4g08410826400proline-rich extensin-like family proteinF:structural constituent of cell wall;P:plant-type cell wall organization;C:unknown;MFPOBVAO.I.C.G.H.G.
18.999.5110.3At5g48000834851CYP708A2Encodes a member of the CYP708A family of cytochrome P450 enzymes. THAH appears to add a hydroxyl group to the triterpene thalianol. thah1 mutants have an elevated accumulation of thalianol. thah1-1 mutants have longer roots than wild type plants. Thalian-diol and desaturated thalian-diol are lost from the root extracts of thah1-1 mutants. Overexpression of the sequence from At5g48000.1 rescues the thah1-1 mutant phenotype (Field 2008); it is unknown whether the shorter sequences associated with other gene models would provide functional complementation.O.I.C.G.H.G.
18.899.524.4At3g26330822237CYP71B37putative cytochrome P450O.I.C.G.H.G.
18.799.518.2At1g13670837928unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
18.699.5131.3At2g24980817037proline-rich extensin-like family proteinF:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFPOBVAO.I.C.G.H.G.
18.699.557.4At5g44550834482integral membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
18.299.5290.7At2g01520814681MLP328 (MLP-LIKE PROTEIN 328)F:copper ion binding;P:response to biotic stimulus, defense response;C:cellular_component unknown;PO.I.C.G.H.G.
17.999.556.3At5g61340836255unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PBO.I.C.G.H.G.
17.999.518.1At1g27140839603ATGSTU14 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 14)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).O.I.C.G.H.G.
17.899.5201.6At1g066408371732-oxoglutarate-dependent dioxygenase, putativeencodes a protein whose sequence is similar to a 2-oxoglutarate-dependent dioxygenaseO.I.C.G.H.G.
17.699.5220.5At5g50200835085WR3 (WOUND-RESPONSIVE 3)Wound-responsive gene 3 (WR3). Encodes a high-affinity nitrate transporter. Up-regulated by nitrate. Involved in jasmonic acid-independent wound signal transduction.O.I.C.G.H.G.
17.699.577.9At4g19030827641NLM1an aquaporin whose expression level is reduced by ABA, NaCl, dark, and dessication. is expressed at relatively low levels under normal conditions. Also functions in arsenite transport and tolerance.O.I.C.G.H.G.
17.299.515.4At5g36140833611CYP716A2member of CYP716AO.I.C.G.H.G.
16.999.580.5At4g29270829048acid phosphatase class B family proteinF:acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBOO.I.C.G.H.G.
16.699.5306.2At4g22212828313-Encodes a defensin-like (DEFL) family protein.O.I.C.G.H.G.
16.499.554.1At3g20015821540aspartic-type endopeptidaseF:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PMFOO.I.C.G.H.G.
16.499.519.3At1g24430839059transferase/ transferase, transferring acyl groups other than amino-acyl groupsF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:N-terminal protein myristoylation;C:cellular_component unknown;PFO.I.C.G.H.G.
16.099.557.4At5g40510834049-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FBPOAO.I.C.G.H.G.
15.999.5153.8At3g54590824624ATHRGP1 (HYDROXYPROLINE-RICH GLYCOPROTEIN)Encodes a hydroxyproline-rich glycoprotein.O.I.C.G.H.G.
15.999.516.2At5g10100830874trehalose-6-phosphate phosphatase, putativeF:catalytic activity, trehalose-phosphatase activity;P:trehalose biosynthetic process, metabolic process;C:chloroplast;BPMOFAO.I.C.G.H.G.
15.999.511.2At4g18630827597unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PMOFO.I.C.G.H.G.
15.899.553.2At3g54580824623proline-rich extensin-like family proteinF:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFBPOVAO.I.C.G.H.G.
15.799.5277.7At2g38380818419peroxidase 22 (PER22) (P22) (PRXEA) / basic peroxidase EF:electron carrier activity, peroxidase activity, heme binding;P:response to salt stress;C:plant-type cell wall;PFOO.I.C.G.H.G.
15.799.580.8At1g74460843787GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOMO.I.C.G.H.G.
15.399.4342.6At4g37410829895CYP81F4member of CYP81FO.I.C.G.H.G.
15.099.416.4At1g16530838223ASL9 (ASYMMETRIC LEAVES 2 LIKE 9)F:unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
14.999.4184.7At1g76790844013O-methyltransferase family 2 proteinF:methyltransferase activity, O-methyltransferase activity, protein dimerization activity;P:unknown;C:cytosol;PBFOMO.I.C.G.H.G.
14.999.454.0At4g27860828899integral membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:integral to membrane;POMBFO.I.C.G.H.G.
14.899.4163.7At4g11310826733cysteine proteinase, putativecysteine proteinase precursor-like proteinO.I.C.G.H.G.
14.799.465.4At2g48140819426EDA4 (embryo sac development arrest 4)F:lipid binding;P:megagametogenesis, lipid transport;C:anchored to membrane;PBMOFVO.I.C.G.H.G.
14.799.423.2At3g27150822334kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBVFAO.I.C.G.H.G.
14.499.432.6At2g22770816807NAI1regulates the development of ER bodies. also involves in response to the endophytic fungus Piriformospora indica.O.I.C.G.H.G.
14.299.427.0At4g25250828628invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:unknown;PMOO.I.C.G.H.G.
13.999.410.8At1g73300843664scpl2 (serine carboxypeptidase-like 2)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBOO.I.C.G.H.G.
13.899.449.0At3g02885821194GASA5 (GAST1 PROTEIN HOMOLOG 5)F:unknown;P:response to gibberellin stimulus;C:endomembrane system;PO.I.C.G.H.G.
13.899.412.8At4g32860829422unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
13.699.426.7At2g28160817362FRU (FER-LIKE REGULATOR OF IRON UPTAKE)Encodes a putative transcription factor that regulates iron uptake responses. mRNA is detected in the outer cell layers of the root and accumulates in response to iron deficiency. The expression of many iron-regulated genes is dependent on FIT1. It specifically regulates FRO2 at the level of mRNA accumulation and IRT1 at the level of protein accumulation.Similar to FER in tomato and is a regulator of iron uptake.O.I.C.G.H.G.
13.699.417.6At3g45680823710proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport, response to nematode;C:membrane;PBMOFO.I.C.G.H.G.
13.499.444.9At1g33800840272unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POBO.I.C.G.H.G.
13.399.4188.2At4g04830825820methionine sulfoxide reductase domain-containing protein / SeIR domain-containing proteinF:peptide-methionine-(S)-S-oxide reductase activity;P:biological_process unknown;C:cellular_component unknown;OBMPFAVO.I.C.G.H.G.
13.399.454.1At5g12420831117unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOMAFO.I.C.G.H.G.
13.399.425.9At1g66800842998cinnamyl-alcohol dehydrogenase family / CAD familysimilar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), apple tree, PIR:T16995; NOT a cinnamyl-alcohol dehydrogenaseO.I.C.G.H.G.
13.399.423.6At2g40480818643unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPBFVO.I.C.G.H.G.
13.299.419.6At2g48080819420oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;PMOO.I.C.G.H.G.
13.199.452.1At5g09520830811hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMPOFVAO.I.C.G.H.G.
13.199.445.4At2g04800815024unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PO.I.C.G.H.G.
12.999.3167.8At4g38080829964hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOVBFAO.I.C.G.H.G.
12.999.358.4At1g31770840064ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMFAPVO.I.C.G.H.G.
12.899.3323.5At1g70850843422MLP34 (MLP-LIKE PROTEIN 34)F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;PO.I.C.G.H.G.
12.899.380.7At2g33770817943PHO2 (PHOSPHATE 2)Encodes a ubiquitin-conjugating E2 enzyme. UBC24 mRNA accumulation is suppressed by miR399f, miR399b and miR399c. Involved in phosphate starvation response.O.I.C.G.H.G.
12.899.365.2At1g67030843022ZFP6 (ZINC FINGER PROTEIN 6)Encodes a zinc finger protein containing only a single zinc finger.O.I.C.G.H.G.
12.799.346.0At1g31710840058copper amine oxidase, putativeF:amine oxidase activity, quinone binding, copper ion binding;P:cellular amine metabolic process;C:endomembrane system;FBMOPAO.I.C.G.H.G.
12.799.326.3At3g19370821471-F:unknown;P:unknown;C:plasma membrane;MOBFPAVO.I.C.G.H.G.
12.599.3286.7At4g12550826868AIR1isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein that is related to a large family of proteins that consist of a proline-rich or glycine-rich N-terminus and a hydrophobic, possibly membrane spanning C-terminus.O.I.C.G.H.G.
12.599.3164.9At1g44800841044nodulin MtN21 family proteinF:molecular_function unknown;P:unknown;C:membrane;BOPAMO.I.C.G.H.G.
12.599.344.5At1g60680842362aldo/keto reductase family proteinF:oxidoreductase activity, aldo-keto reductase activity;P:oxidation reduction;C:unknown;BOMFPAO.I.C.G.H.G.
12.599.328.5At4g35150829667O-methyltransferase family 2 proteinF:methyltransferase activity, O-methyltransferase activity, protein dimerization activity;P:unknown;C:cytosol;PBFMOO.I.C.G.H.G.
12.599.319.5At1g16310838200cation efflux family proteinF:cation transmembrane transporter activity;P:cation transport;C:membrane;BOFPAMO.I.C.G.H.G.
12.599.318.8At2g28250817371NCRKF:kinase activity;P:xylem histogenesis;C:endosome, endomembrane system;MPOBFVAO.I.C.G.H.G.
12.499.3122.5At5g59090836026ATSBT4.12F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast, nucleus, cytoplasm;BPOFAMO.I.C.G.H.G.
12.499.360.0At3g16340820881PDR1F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:plasma membrane;BOMFAPVO.I.C.G.H.G.
12.499.322.7At1g47480841155hydrolaseF:hydrolase activity;P:metabolic process;C:cellular_component unknown;BOPFMAVO.I.C.G.H.G.
12.399.3168.7At3g44990823634XTR8 (XYLOGLUCAN ENDO-TRANSGLYCOSYLASE-RELATED 8)xyloglucan endo-transglycosylaseO.I.C.G.H.G.
12.299.3252.9At2g01530814682MLP329 (MLP-LIKE PROTEIN 329)F:copper ion binding;P:response to biotic stimulus, defense response;C:cellular_component unknown;PO.I.C.G.H.G.



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