CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM133127

Assay name S0_4H_A

GSE experiment GSE5688: AtGenExpress: Response to sulfate limitation

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
63.1 99.8 64.2 At1g72140 843545 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport, response to nematode;C:plasma membrane, membrane;BPMOF O.I. C.G. H.G.
50.1 99.8 105.7 At2g32270 817787 ZIP3 A member of Zrt- and Irt-related protein (ZIP) family. transcript is induced in response to zinc deficiency in the root. also response to iron deficiency. O.I. C.G. H.G.
44.5 99.8 193.8 At5g48430 834898 aspartic-type endopeptidase F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;P O.I. C.G. H.G.
42.1 99.8 80.2 At1g14120 837971 2-oxoglutarate-dependent dioxygenase, putative F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;POBFM O.I. C.G. H.G.
41.2 99.8 74.7 At5g38030 833782 MATE efflux family protein F:antiporter activity, drug transporter activity, transporter activity;P:response to nematode;C:membrane;BOPFAM O.I. C.G. H.G.
34.8 99.7 44.1 At3g26460 822251 major latex protein-related / MLP-related F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P O.I. C.G. H.G.
34.6 99.7 60.7 At3g01260 821171 aldose 1-epimerase/ carbohydrate binding / catalytic/ isomerase F:carbohydrate binding, isomerase activity, aldose 1-epimerase activity, catalytic activity;P:galactose metabolic process, hexose metabolic process, carbohydrate metabolic process;C:endomembrane system;OBMFPVA O.I. C.G. H.G.
33.7 99.7 73.2 At3g45710 823713 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;PBMOFA O.I. C.G. H.G.
32.6 99.7 300.8 At1g08090 837327 ATNRT2:1 (NITRATE TRANSPORTER 2:1) High-affinity nitrate transporter. Up-regulated by nitrate. Functions as a repressor of lateral root initiation independently of nitrate uptake. O.I. C.G. H.G.
32.2 99.7 144.4 At1g23720 838982 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:unknown;MBFOPVA O.I. C.G. H.G.
30.3 99.7 38.7 At4g18510 827583 CLE2 (CLAVATA3/ESR-RELATED) CLE2, putative ligand, member of large gene family homologous to Clavata3 O.I. C.G. H.G.
28.8 99.7 36.2 At5g15830 831440 AtbZIP3 (Arabidopsis thaliana basic leucine-zipper 3) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;POMFB O.I. C.G. H.G.
26.5 99.7 42.1 At5g10210 830885 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
25.3 99.6 213.8 At4g11310 826733 cysteine proteinase, putative cysteine proteinase precursor-like protein O.I. C.G. H.G.
24.2 99.6 20.1 At2g19060 816423 GDSL-motif lipase/hydrolase family protein F:lipase activity, hydrolase activity, acting on ester bonds;P:lipid metabolic process;C:endomembrane system;PBOFM O.I. C.G. H.G.
23.8 99.6 12.4 At3g62740 825449 BGLU7 (BETA GLUCOSIDASE 7) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA O.I. C.G. H.G.
23.7 99.6 60.7 At5g06300 830518 carboxy-lyase F:carboxy-lyase activity;P:metabolic process;C:unknown;BOPFMA O.I. C.G. H.G.
23.5 99.6 56.4 At2g29660 817516 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:anchored to membrane;PFO O.I. C.G. H.G.
23.1 99.6 220.1 At1g21310 838728 ATEXT3 (EXTENSIN 3) Encodes extensin 3. O.I. C.G. H.G.
22.4 99.6 81.3 At5g37990 833778 S-adenosylmethionine-dependent methyltransferase/ methyltransferase F:S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity;P:biological_process unknown;C:endomembrane system;POBMF O.I. C.G. H.G.
22.1 99.6 109.7 At5g48010 834852 THAS1 (THALIANOL SYNTHASE 1) Encodes an oxidosqualene cyclase involved in the biosynthesis of thalianol, a tricyclic triterpenoid of unknown function. Overexpression of THAS leads to dwarfing in the aerial tissues of Arabidopsis plants, but increases their root length. THAS is part of a small operon-like cluster of genes (with At5g48000 (THAH) and At5g47990 (THAD)) involved in thalianol metabolism. O.I. C.G. H.G.
22.0 99.6 199.8 At1g35580 840454 CINV1 (cytosolic invertase 1) Encodes a protein with cytosolic (alkaline/neutral) invertase activity. The protein was shown to interact with PIP5K9. O.I. C.G. H.G.
21.6 99.6 86.3 At4g19030 827641 NLM1 an aquaporin whose expression level is reduced by ABA, NaCl, dark, and dessication. is expressed at relatively low levels under normal conditions. Also functions in arsenite transport and tolerance. O.I. C.G. H.G.
21.6 99.6 64.4 At5g60890 836210 MYB34 (MYB DOMAIN PROTEIN 34) Myb-like transcription factor that modulates expression of ASA1, a key point of control in the tryptophan pathway; mutant has deregulated expression of ASA1 in dominant allele. Loss of function allele suggests ATR1 also functions at a control point for regulating indole glucosinolate homeostasis. O.I. C.G. H.G.
21.5 99.6 202.1 At1g26250 839166 proline-rich extensin, putative F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MPBOFVA O.I. C.G. H.G.
21.3 99.6 334.0 At2g01530 814682 MLP329 (MLP-LIKE PROTEIN 329) F:copper ion binding;P:response to biotic stimulus, defense response;C:cellular_component unknown;P O.I. C.G. H.G.
21.0 99.6 58.4 At5g65280 836653 GCL1 (GCR2-LIKE 1) Encodes a protein with reported similarity to GCR2 a putative G protein coupled receptor thought to be an ABA receptor. Loss of function mutations in GCL1 show no ABA response defects based on assays of seed germination and seedling development.GCL1 also has similarity to LANCL1 and LANCL2, human homologs of bacterial lanthionine synthetase. O.I. C.G. H.G.
20.8 99.6 258.3 At5g63600 836480 FLS5 (FLAVONOL SYNTHASE 5) encodes a protein whose sequence is similar to flavonol synthase O.I. C.G. H.G.
20.8 99.6 54.7 At3g28550 822485 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MPFBOVA O.I. C.G. H.G.
20.6 99.6 225.0 At5g43350 834353 PHT1 Encodes an inorganic phosphate transporter. Mutants display enhanced arsenic accumulation. O.I. C.G. H.G.
20.4 99.6 60.5 At5g43520 834372 DC1 domain-containing protein F:unknown;P:unknown;C:unknown;POMF O.I. C.G. H.G.
20.2 99.6 337.9 At4g22212 828313 - Encodes a defensin-like (DEFL) family protein. O.I. C.G. H.G.
20.1 99.6 67.8 At3g26470 822252 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
19.6 99.6 151.6 At5g26260 832695 meprin and TRAF homology domain-containing protein / MATH domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POF O.I. C.G. H.G.
19.3 99.6 385.2 At4g37410 829895 CYP81F4 member of CYP81F O.I. C.G. H.G.
19.2 99.6 56.5 At1g31710 840058 copper amine oxidase, putative F:amine oxidase activity, quinone binding, copper ion binding;P:cellular amine metabolic process;C:endomembrane system;FBMOPA O.I. C.G. H.G.
19.1 99.6 68.9 At3g24290 822017 AMT1 F:ammonium transmembrane transporter activity;P:ammonium transport, transport;C:endomembrane system, membrane;OBMFPA O.I. C.G. H.G.
18.7 99.5 36.8 At4g37010 829855 caltractin, putative / centrin, putative F:calcium ion binding;P:biological_process unknown;C:unknown;MFPOB O.I. C.G. H.G.
18.7 99.5 31.2 At2g28160 817362 FRU (FER-LIKE REGULATOR OF IRON UPTAKE) Encodes a putative transcription factor that regulates iron uptake responses. mRNA is detected in the outer cell layers of the root and accumulates in response to iron deficiency. The expression of many iron-regulated genes is dependent on FIT1. It specifically regulates FRO2 at the level of mRNA accumulation and IRT1 at the level of protein accumulation.Similar to FER in tomato and is a regulator of iron uptake. O.I. C.G. H.G.
18.3 99.5 84.2 At1g75540 843890 STH2 (SALT TOLERANCE HOMOLOG2) F:transcription factor activity, zinc ion binding;P:unknown;C:intracellular;POMF O.I. C.G. H.G.
17.9 99.5 178.2 At2g36380 818211 PDR6 F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:plasma membrane;BOMAFPV O.I. C.G. H.G.
17.7 99.5 85.5 At4g01450 828176 nodulin MtN21 family protein F:unknown;P:unknown;C:endomembrane system, membrane;PBOM O.I. C.G. H.G.
17.6 99.5 145.9 At5g59090 836026 ATSBT4.12 F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast, nucleus, cytoplasm;BPOFAM O.I. C.G. H.G.
17.6 99.5 44.7 At3g46130 823756 MYB111 (MYB DOMAIN PROTEIN 111) Encodes a putative transcription factor (MYB48) that functions to regulate flavonol biosynthesis primarily in cotyledons. O.I. C.G. H.G.
17.5 99.5 214.5 At1g78000 844135 SULTR1 Encodes a sulfate transporter that can restore sulfate uptake capacity of a yeast mutant lacking sulfate transporter genes. O.I. C.G. H.G.
17.5 99.5 148.8 At3g09270 820083 ATGSTU8 (GLUTATHIONE S-TRANSFERASE TAU 8) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
16.7 99.5 42.4 At2g46740 819287 FAD-binding domain-containing protein F:oxidoreductase activity, D-arabinono-1,4-lactone oxidase activity, FAD binding, catalytic activity;P:unknown;C:cell wall;BOFPMA O.I. C.G. H.G.
16.2 99.5 363.8 At1g70850 843422 MLP34 (MLP-LIKE PROTEIN 34) F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P O.I. C.G. H.G.
16.2 99.5 115.5 At5g10580 830923 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPO O.I. C.G. H.G.
16.0 99.5 19.1 At3g45680 823710 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport, response to nematode;C:membrane;PBMOF O.I. C.G. H.G.
15.8 99.5 22.4 At3g26330 822237 CYP71B37 putative cytochrome P450 O.I. C.G. H.G.
15.5 99.5 64.1 At1g31770 840064 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMFAPV O.I. C.G. H.G.
15.3 99.4 158.9 At3g29250 822580 copper ion binding / oxidoreductase F:oxidoreductase activity, copper ion binding;P:metabolic process;C:cellular_component unknown;BOFMPAV O.I. C.G. H.G.
15.3 99.4 118.6 At2g47180 819331 AtGolS1 (Arabidopsis thaliana galactinol synthase 1) F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:response to high light intensity, response to hydrogen peroxide, carbohydrate biosynthetic process, response to heat;C:cellular_component unknown;PMFVBO O.I. C.G. H.G.
15.2 99.4 25.2 At5g15130 831365 WRKY72 member of WRKY Transcription Factor; Group II-b O.I. C.G. H.G.
15.1 99.4 230.6 At3g01420 821135 DOX1 Encodes an alpha-dioxygenase involved in protection against oxidative stress and cell death. Induced in response to Salicylic acid and oxidative stress. Independent of NPR1 in induction by salicylic acid. O.I. C.G. H.G.
14.9 99.4 21.8 At1g50560 841477 CYP705A25 member of CYP705A O.I. C.G. H.G.
14.8 99.4 184.0 At1g76790 844013 O-methyltransferase family 2 protein F:methyltransferase activity, O-methyltransferase activity, protein dimerization activity;P:unknown;C:cytosol;PBFOM O.I. C.G. H.G.
14.8 99.4 91.9 At2g29995 817550 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
14.8 99.4 90.2 At2g22330 816765 CYP79B3 Encodes a cytochrome P450. Involved in tryptophan metabolism. Converts Trp to indole-3-acetaldoxime (IAOx), a precursor to IAA and indole glucosinolates. O.I. C.G. H.G.
14.8 99.4 44.0 At4g37060 829860 PLP5 (PATATIN-LIKE PROTEIN 5) F:nutrient reservoir activity;P:metabolic process, lipid metabolic process;C:cellular_component unknown;PBOMF O.I. C.G. H.G.
14.7 99.4 65.1 At5g38020 833781 S-adenosyl-L-methionine:carboxyl methyltransferase family protein encodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus) O.I. C.G. H.G.
14.7 99.4 40.9 At5g19600 832080 SULTR3 Encodes sulfate transporter Sultr3;5. O.I. C.G. H.G.
14.6 99.4 197.3 At4g04830 825820 methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein F:peptide-methionine-(S)-S-oxide reductase activity;P:biological_process unknown;C:cellular_component unknown;OBMPFAV O.I. C.G. H.G.
14.3 99.4 316.6 At5g64100 836531 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:cell wall;PFO O.I. C.G. H.G.
14.3 99.4 257.7 At2g01520 814681 MLP328 (MLP-LIKE PROTEIN 328) F:copper ion binding;P:response to biotic stimulus, defense response;C:cellular_component unknown;P O.I. C.G. H.G.
14.3 99.4 180.7 At1g06640 837173 2-oxoglutarate-dependent dioxygenase, putative encodes a protein whose sequence is similar to a 2-oxoglutarate-dependent dioxygenase O.I. C.G. H.G.
14.3 99.4 109.0 At3g62040 825377 catalytic/ hydrolase F:hydrolase activity, catalytic activity;P:metabolic process;C:unknown;OBPFA O.I. C.G. H.G.
14.3 99.4 32.6 At5g24290 832496 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMFPVA O.I. C.G. H.G.
14.1 99.4 73.5 At4g29270 829048 acid phosphatase class B family protein F:acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBO O.I. C.G. H.G.
14.0 99.4 194.3 At2g05440 815093 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVA O.I. C.G. H.G.
14.0 99.4 32.1 At2g22770 816807 NAI1 regulates the development of ER bodies. also involves in response to the endophytic fungus Piriformospora indica. O.I. C.G. H.G.
13.9 99.4 110.4 At3g11280 820299 myb family transcription factor Putative transcription factors interacting with the gene product of VHA-B1 (vacuolar ATPase subunit B1; as shown through yeast two-hybrid assay). O.I. C.G. H.G.
13.8 99.4 173.2 At4g38080 829964 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOVBFA O.I. C.G. H.G.
13.6 99.4 46.3 At2g04800 815024 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P O.I. C.G. H.G.
13.6 99.4 26.3 At1g66800 842998 cinnamyl-alcohol dehydrogenase family / CAD family similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), apple tree, PIR:T16995; NOT a cinnamyl-alcohol dehydrogenase O.I. C.G. H.G.
13.5 99.4 52.7 At5g40510 834049 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FBPOA O.I. C.G. H.G.
13.4 99.4 192.5 At5g50200 835085 WR3 (WOUND-RESPONSIVE 3) Wound-responsive gene 3 (WR3). Encodes a high-affinity nitrate transporter. Up-regulated by nitrate. Involved in jasmonic acid-independent wound signal transduction. O.I. C.G. H.G.
13.4 99.4 30.4 At1g10380 837577 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
13.1 99.4 144.5 At1g15380 838107 lactoylglutathione lyase family protein / glyoxalase I family protein F:lactoylglutathione lyase activity;P:carbohydrate metabolic process;C:cellular_component unknown;BPOMFA O.I. C.G. H.G.
13.1 99.4 10.9 At1g11450 837687 nodulin MtN21 family protein F:unknown;P:unknown;C:endomembrane system, membrane;PBOAM O.I. C.G. H.G.
13.0 99.4 91.4 At5g48000 834851 CYP708A2 Encodes a member of the CYP708A family of cytochrome P450 enzymes. THAH appears to add a hydroxyl group to the triterpene thalianol. thah1 mutants have an elevated accumulation of thalianol. thah1-1 mutants have longer roots than wild type plants. Thalian-diol and desaturated thalian-diol are lost from the root extracts of thah1-1 mutants. Overexpression of the sequence from At5g48000.1 rescues the thah1-1 mutant phenotype (Field 2008); it is unknown whether the shorter sequences associated with other gene models would provide functional complementation. O.I. C.G. H.G.
12.9 99.3 15.1 At1g13670 837928 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
12.8 99.3 109.0 At2g24980 817037 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFPOBVA O.I. C.G. H.G.
12.8 99.3 15.9 At3g46700 823823 UDP-glycosyltransferase/ transferase, transferring glycosyl groups F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBVOF O.I. C.G. H.G.
12.7 99.3 177.2 At5g43780 834400 APS4 sulfate adenylyltransferase, ATP sulfurylase O.I. C.G. H.G.
12.7 99.3 140.1 At4g39950 830154 CYP79B2 Belongs to cytochrome P450 and is involved in tryptophan metabolism. Converts Trp to indo-3-acetaldoxime (IAOx), a precursor to IAA and indole glucosinolates. O.I. C.G. H.G.
12.7 99.3 67.8 At1g13300 837890 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POVBMF O.I. C.G. H.G.
12.6 99.3 229.6 At3g15950 820839 NAI2 Similar to TSK-associating protein 1 (TSA1), contains 10 EFE repeats, a novel repeat sequence unique to plants. Expressed preferentially in the roots.Protein is localized to ER bodies- an endoplasmic reticulum derived structure. Loss of function mutations lack ER bodies. O.I. C.G. H.G.
12.6 99.3 46.2 At2g01880 814719 PAP7 (PURPLE ACID PHOSPHATASE 7) F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:unknown;C:endomembrane system;MOBPF O.I. C.G. H.G.
12.5 99.3 195.9 At2g17500 816256 auxin efflux carrier family protein F:auxin:hydrogen symporter activity;P:auxin polar transport;C:endomembrane system, integral to membrane;PFOBA O.I. C.G. H.G.
12.5 99.3 54.0 At1g21100 838706 O-methyltransferase, putative F:methyltransferase activity, O-methyltransferase activity, protein dimerization activity;P:unknown;C:cytosol;PBFOM O.I. C.G. H.G.
12.5 99.3 28.7 At2g21560 816695 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBV O.I. C.G. H.G.
12.4 99.3 93.6 At5g06630 830551 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFPOBVA O.I. C.G. H.G.
12.4 99.3 20.4 At5g25160 832587 ZFP3 (ZINC FINGER PROTEIN 3) Encodes a zinc finger protein containing only a single zinc finger. O.I. C.G. H.G.
12.4 99.3 11.4 At4g36060 829762 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus, chloroplast, cytoplasm;PMOBF O.I. C.G. H.G.
12.2 99.3 143.3 At5g17820 831650 peroxidase 57 (PER57) (P57) (PRXR10) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:cell wall, membrane, plant-type cell wall;PFOM O.I. C.G. H.G.
12.2 99.3 32.5 At3g45700 823712 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;PMBOF O.I. C.G. H.G.
12.2 99.3 29.3 At5g18860 832004 inosine-uridine preferring nucleoside hydrolase family protein F:hydrolase activity;P:biological_process unknown;C:cell wall;BOMPFA O.I. C.G. H.G.
12.0 99.3 161.6 At1g44800 841044 nodulin MtN21 family protein F:molecular_function unknown;P:unknown;C:membrane;BOPAM O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
63.1	99.8	64.2	At1g72140	843545	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport, response to nematode;C:plasma membrane, membrane;BPMOF	O.I.	C.G.	H.G.
50.1	99.8	105.7	At2g32270	817787	ZIP3	A member of Zrt- and Irt-related protein (ZIP) family. transcript is induced in response to zinc deficiency in the root. also response to iron deficiency.	O.I.	C.G.	H.G.
44.5	99.8	193.8	At5g48430	834898	aspartic-type endopeptidase	F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;P	O.I.	C.G.	H.G.
42.1	99.8	80.2	At1g14120	837971	2-oxoglutarate-dependent dioxygenase, putative	F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;POBFM	O.I.	C.G.	H.G.
41.2	99.8	74.7	At5g38030	833782	MATE efflux family protein	F:antiporter activity, drug transporter activity, transporter activity;P:response to nematode;C:membrane;BOPFAM	O.I.	C.G.	H.G.
34.8	99.7	44.1	At3g26460	822251	major latex protein-related / MLP-related	F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P	O.I.	C.G.	H.G.
34.6	99.7	60.7	At3g01260	821171	aldose 1-epimerase/ carbohydrate binding / catalytic/ isomerase	F:carbohydrate binding, isomerase activity, aldose 1-epimerase activity, catalytic activity;P:galactose metabolic process, hexose metabolic process, carbohydrate metabolic process;C:endomembrane system;OBMFPVA	O.I.	C.G.	H.G.
33.7	99.7	73.2	At3g45710	823713	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport;C:membrane;PBMOFA	O.I.	C.G.	H.G.
32.6	99.7	300.8	At1g08090	837327	ATNRT2:1 (NITRATE TRANSPORTER 2:1)	High-affinity nitrate transporter. Up-regulated by nitrate. Functions as a repressor of lateral root initiation independently of nitrate uptake.	O.I.	C.G.	H.G.
32.2	99.7	144.4	At1g23720	838982	proline-rich extensin-like family protein	F:structural constituent of cell wall;P:plant-type cell wall organization;C:unknown;MBFOPVA	O.I.	C.G.	H.G.
30.3	99.7	38.7	At4g18510	827583	CLE2 (CLAVATA3/ESR-RELATED)	CLE2, putative ligand, member of large gene family homologous to Clavata3	O.I.	C.G.	H.G.
28.8	99.7	36.2	At5g15830	831440	AtbZIP3 (Arabidopsis thaliana basic leucine-zipper 3)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;POMFB	O.I.	C.G.	H.G.
26.5	99.7	42.1	At5g10210	830885	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
25.3	99.6	213.8	At4g11310	826733	cysteine proteinase, putative	cysteine proteinase precursor-like protein	O.I.	C.G.	H.G.
24.2	99.6	20.1	At2g19060	816423	GDSL-motif lipase/hydrolase family protein	F:lipase activity, hydrolase activity, acting on ester bonds;P:lipid metabolic process;C:endomembrane system;PBOFM	O.I.	C.G.	H.G.
23.8	99.6	12.4	At3g62740	825449	BGLU7 (BETA GLUCOSIDASE 7)	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA	O.I.	C.G.	H.G.
23.7	99.6	60.7	At5g06300	830518	carboxy-lyase	F:carboxy-lyase activity;P:metabolic process;C:unknown;BOPFMA	O.I.	C.G.	H.G.
23.5	99.6	56.4	At2g29660	817516	zinc finger (C2H2 type) family protein	F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:anchored to membrane;PFO	O.I.	C.G.	H.G.
23.1	99.6	220.1	At1g21310	838728	ATEXT3 (EXTENSIN 3)	Encodes extensin 3.	O.I.	C.G.	H.G.
22.4	99.6	81.3	At5g37990	833778	S-adenosylmethionine-dependent methyltransferase/ methyltransferase	F:S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity;P:biological_process unknown;C:endomembrane system;POBMF	O.I.	C.G.	H.G.
22.1	99.6	109.7	At5g48010	834852	THAS1 (THALIANOL SYNTHASE 1)	Encodes an oxidosqualene cyclase involved in the biosynthesis of thalianol, a tricyclic triterpenoid of unknown function. Overexpression of THAS leads to dwarfing in the aerial tissues of Arabidopsis plants, but increases their root length. THAS is part of a small operon-like cluster of genes (with At5g48000 (THAH) and At5g47990 (THAD)) involved in thalianol metabolism.	O.I.	C.G.	H.G.
22.0	99.6	199.8	At1g35580	840454	CINV1 (cytosolic invertase 1)	Encodes a protein with cytosolic (alkaline/neutral) invertase activity. The protein was shown to interact with PIP5K9.	O.I.	C.G.	H.G.
21.6	99.6	86.3	At4g19030	827641	NLM1	an aquaporin whose expression level is reduced by ABA, NaCl, dark, and dessication. is expressed at relatively low levels under normal conditions. Also functions in arsenite transport and tolerance.	O.I.	C.G.	H.G.
21.6	99.6	64.4	At5g60890	836210	MYB34 (MYB DOMAIN PROTEIN 34)	Myb-like transcription factor that modulates expression of ASA1, a key point of control in the tryptophan pathway; mutant has deregulated expression of ASA1 in dominant allele. Loss of function allele suggests ATR1 also functions at a control point for regulating indole glucosinolate homeostasis.	O.I.	C.G.	H.G.
21.5	99.6	202.1	At1g26250	839166	proline-rich extensin, putative	F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MPBOFVA	O.I.	C.G.	H.G.
21.3	99.6	334.0	At2g01530	814682	MLP329 (MLP-LIKE PROTEIN 329)	F:copper ion binding;P:response to biotic stimulus, defense response;C:cellular_component unknown;P	O.I.	C.G.	H.G.
21.0	99.6	58.4	At5g65280	836653	GCL1 (GCR2-LIKE 1)	Encodes a protein with reported similarity to GCR2 a putative G protein coupled receptor thought to be an ABA receptor. Loss of function mutations in GCL1 show no ABA response defects based on assays of seed germination and seedling development.GCL1 also has similarity to LANCL1 and LANCL2, human homologs of bacterial lanthionine synthetase.	O.I.	C.G.	H.G.
20.8	99.6	258.3	At5g63600	836480	FLS5 (FLAVONOL SYNTHASE 5)	encodes a protein whose sequence is similar to flavonol synthase	O.I.	C.G.	H.G.
20.8	99.6	54.7	At3g28550	822485	proline-rich extensin-like family protein	F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MPFBOVA	O.I.	C.G.	H.G.
20.6	99.6	225.0	At5g43350	834353	PHT1	Encodes an inorganic phosphate transporter. Mutants display enhanced arsenic accumulation.	O.I.	C.G.	H.G.
20.4	99.6	60.5	At5g43520	834372	DC1 domain-containing protein	F:unknown;P:unknown;C:unknown;POMF	O.I.	C.G.	H.G.
20.2	99.6	337.9	At4g22212	828313	-	Encodes a defensin-like (DEFL) family protein.	O.I.	C.G.	H.G.
20.1	99.6	67.8	At3g26470	822252	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
19.6	99.6	151.6	At5g26260	832695	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POF	O.I.	C.G.	H.G.
19.3	99.6	385.2	At4g37410	829895	CYP81F4	member of CYP81F	O.I.	C.G.	H.G.
19.2	99.6	56.5	At1g31710	840058	copper amine oxidase, putative	F:amine oxidase activity, quinone binding, copper ion binding;P:cellular amine metabolic process;C:endomembrane system;FBMOPA	O.I.	C.G.	H.G.
19.1	99.6	68.9	At3g24290	822017	AMT1	F:ammonium transmembrane transporter activity;P:ammonium transport, transport;C:endomembrane system, membrane;OBMFPA	O.I.	C.G.	H.G.
18.7	99.5	36.8	At4g37010	829855	caltractin, putative / centrin, putative	F:calcium ion binding;P:biological_process unknown;C:unknown;MFPOB	O.I.	C.G.	H.G.
18.7	99.5	31.2	At2g28160	817362	FRU (FER-LIKE REGULATOR OF IRON UPTAKE)	Encodes a putative transcription factor that regulates iron uptake responses. mRNA is detected in the outer cell layers of the root and accumulates in response to iron deficiency. The expression of many iron-regulated genes is dependent on FIT1. It specifically regulates FRO2 at the level of mRNA accumulation and IRT1 at the level of protein accumulation.Similar to FER in tomato and is a regulator of iron uptake.	O.I.	C.G.	H.G.
18.3	99.5	84.2	At1g75540	843890	STH2 (SALT TOLERANCE HOMOLOG2)	F:transcription factor activity, zinc ion binding;P:unknown;C:intracellular;POMF	O.I.	C.G.	H.G.
17.9	99.5	178.2	At2g36380	818211	PDR6	F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:plasma membrane;BOMAFPV	O.I.	C.G.	H.G.
17.7	99.5	85.5	At4g01450	828176	nodulin MtN21 family protein	F:unknown;P:unknown;C:endomembrane system, membrane;PBOM	O.I.	C.G.	H.G.
17.6	99.5	145.9	At5g59090	836026	ATSBT4.12	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast, nucleus, cytoplasm;BPOFAM	O.I.	C.G.	H.G.
17.6	99.5	44.7	At3g46130	823756	MYB111 (MYB DOMAIN PROTEIN 111)	Encodes a putative transcription factor (MYB48) that functions to regulate flavonol biosynthesis primarily in cotyledons.	O.I.	C.G.	H.G.
17.5	99.5	214.5	At1g78000	844135	SULTR1	Encodes a sulfate transporter that can restore sulfate uptake capacity of a yeast mutant lacking sulfate transporter genes.	O.I.	C.G.	H.G.
17.5	99.5	148.8	At3g09270	820083	ATGSTU8 (GLUTATHIONE S-TRANSFERASE TAU 8)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
16.7	99.5	42.4	At2g46740	819287	FAD-binding domain-containing protein	F:oxidoreductase activity, D-arabinono-1,4-lactone oxidase activity, FAD binding, catalytic activity;P:unknown;C:cell wall;BOFPMA	O.I.	C.G.	H.G.
16.2	99.5	363.8	At1g70850	843422	MLP34 (MLP-LIKE PROTEIN 34)	F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P	O.I.	C.G.	H.G.
16.2	99.5	115.5	At5g10580	830923	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPO	O.I.	C.G.	H.G.
16.0	99.5	19.1	At3g45680	823710	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport, response to nematode;C:membrane;PBMOF	O.I.	C.G.	H.G.
15.8	99.5	22.4	At3g26330	822237	CYP71B37	putative cytochrome P450	O.I.	C.G.	H.G.
15.5	99.5	64.1	At1g31770	840064	ABC transporter family protein	F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMFAPV	O.I.	C.G.	H.G.
15.3	99.4	158.9	At3g29250	822580	copper ion binding / oxidoreductase	F:oxidoreductase activity, copper ion binding;P:metabolic process;C:cellular_component unknown;BOFMPAV	O.I.	C.G.	H.G.
15.3	99.4	118.6	At2g47180	819331	AtGolS1 (Arabidopsis thaliana galactinol synthase 1)	F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:response to high light intensity, response to hydrogen peroxide, carbohydrate biosynthetic process, response to heat;C:cellular_component unknown;PMFVBO	O.I.	C.G.	H.G.
15.2	99.4	25.2	At5g15130	831365	WRKY72	member of WRKY Transcription Factor; Group II-b	O.I.	C.G.	H.G.
15.1	99.4	230.6	At3g01420	821135	DOX1	Encodes an alpha-dioxygenase involved in protection against oxidative stress and cell death. Induced in response to Salicylic acid and oxidative stress. Independent of NPR1 in induction by salicylic acid.	O.I.	C.G.	H.G.
14.9	99.4	21.8	At1g50560	841477	CYP705A25	member of CYP705A	O.I.	C.G.	H.G.
14.8	99.4	184.0	At1g76790	844013	O-methyltransferase family 2 protein	F:methyltransferase activity, O-methyltransferase activity, protein dimerization activity;P:unknown;C:cytosol;PBFOM	O.I.	C.G.	H.G.
14.8	99.4	91.9	At2g29995	817550	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
14.8	99.4	90.2	At2g22330	816765	CYP79B3	Encodes a cytochrome P450. Involved in tryptophan metabolism. Converts Trp to indole-3-acetaldoxime (IAOx), a precursor to IAA and indole glucosinolates.	O.I.	C.G.	H.G.
14.8	99.4	44.0	At4g37060	829860	PLP5 (PATATIN-LIKE PROTEIN 5)	F:nutrient reservoir activity;P:metabolic process, lipid metabolic process;C:cellular_component unknown;PBOMF	O.I.	C.G.	H.G.
14.7	99.4	65.1	At5g38020	833781	S-adenosyl-L-methionine:carboxyl methyltransferase family protein	encodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus)	O.I.	C.G.	H.G.
14.7	99.4	40.9	At5g19600	832080	SULTR3	Encodes sulfate transporter Sultr3;5.	O.I.	C.G.	H.G.
14.6	99.4	197.3	At4g04830	825820	methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein	F:peptide-methionine-(S)-S-oxide reductase activity;P:biological_process unknown;C:cellular_component unknown;OBMPFAV	O.I.	C.G.	H.G.
14.3	99.4	316.6	At5g64100	836531	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:cell wall;PFO	O.I.	C.G.	H.G.
14.3	99.4	257.7	At2g01520	814681	MLP328 (MLP-LIKE PROTEIN 328)	F:copper ion binding;P:response to biotic stimulus, defense response;C:cellular_component unknown;P	O.I.	C.G.	H.G.
14.3	99.4	180.7	At1g06640	837173	2-oxoglutarate-dependent dioxygenase, putative	encodes a protein whose sequence is similar to a 2-oxoglutarate-dependent dioxygenase	O.I.	C.G.	H.G.
14.3	99.4	109.0	At3g62040	825377	catalytic/ hydrolase	F:hydrolase activity, catalytic activity;P:metabolic process;C:unknown;OBPFA	O.I.	C.G.	H.G.
14.3	99.4	32.6	At5g24290	832496	integral membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMFPVA	O.I.	C.G.	H.G.
14.1	99.4	73.5	At4g29270	829048	acid phosphatase class B family protein	F:acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBO	O.I.	C.G.	H.G.
14.0	99.4	194.3	At2g05440	815093	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVA	O.I.	C.G.	H.G.
14.0	99.4	32.1	At2g22770	816807	NAI1	regulates the development of ER bodies. also involves in response to the endophytic fungus Piriformospora indica.	O.I.	C.G.	H.G.
13.9	99.4	110.4	At3g11280	820299	myb family transcription factor	Putative transcription factors interacting with the gene product of VHA-B1 (vacuolar ATPase subunit B1; as shown through yeast two-hybrid assay).	O.I.	C.G.	H.G.
13.8	99.4	173.2	At4g38080	829964	hydroxyproline-rich glycoprotein family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOVBFA	O.I.	C.G.	H.G.
13.6	99.4	46.3	At2g04800	815024	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P	O.I.	C.G.	H.G.
13.6	99.4	26.3	At1g66800	842998	cinnamyl-alcohol dehydrogenase family / CAD family	similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), apple tree, PIR:T16995; NOT a cinnamyl-alcohol dehydrogenase	O.I.	C.G.	H.G.
13.5	99.4	52.7	At5g40510	834049	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FBPOA	O.I.	C.G.	H.G.
13.4	99.4	192.5	At5g50200	835085	WR3 (WOUND-RESPONSIVE 3)	Wound-responsive gene 3 (WR3). Encodes a high-affinity nitrate transporter. Up-regulated by nitrate. Involved in jasmonic acid-independent wound signal transduction.	O.I.	C.G.	H.G.
13.4	99.4	30.4	At1g10380	837577	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
13.1	99.4	144.5	At1g15380	838107	lactoylglutathione lyase family protein / glyoxalase I family protein	F:lactoylglutathione lyase activity;P:carbohydrate metabolic process;C:cellular_component unknown;BPOMFA	O.I.	C.G.	H.G.
13.1	99.4	10.9	At1g11450	837687	nodulin MtN21 family protein	F:unknown;P:unknown;C:endomembrane system, membrane;PBOAM	O.I.	C.G.	H.G.
13.0	99.4	91.4	At5g48000	834851	CYP708A2	Encodes a member of the CYP708A family of cytochrome P450 enzymes. THAH appears to add a hydroxyl group to the triterpene thalianol. thah1 mutants have an elevated accumulation of thalianol. thah1-1 mutants have longer roots than wild type plants. Thalian-diol and desaturated thalian-diol are lost from the root extracts of thah1-1 mutants. Overexpression of the sequence from At5g48000.1 rescues the thah1-1 mutant phenotype (Field 2008); it is unknown whether the shorter sequences associated with other gene models would provide functional complementation.	O.I.	C.G.	H.G.
12.9	99.3	15.1	At1g13670	837928	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
12.8	99.3	109.0	At2g24980	817037	proline-rich extensin-like family protein	F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFPOBVA	O.I.	C.G.	H.G.
12.8	99.3	15.9	At3g46700	823823	UDP-glycosyltransferase/ transferase, transferring glycosyl groups	F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBVOF	O.I.	C.G.	H.G.
12.7	99.3	177.2	At5g43780	834400	APS4	sulfate adenylyltransferase, ATP sulfurylase	O.I.	C.G.	H.G.
12.7	99.3	140.1	At4g39950	830154	CYP79B2	Belongs to cytochrome P450 and is involved in tryptophan metabolism. Converts Trp to indo-3-acetaldoxime (IAOx), a precursor to IAA and indole glucosinolates.	O.I.	C.G.	H.G.
12.7	99.3	67.8	At1g13300	837890	myb family transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POVBMF	O.I.	C.G.	H.G.
12.6	99.3	229.6	At3g15950	820839	NAI2	Similar to TSK-associating protein 1 (TSA1), contains 10 EFE repeats, a novel repeat sequence unique to plants. Expressed preferentially in the roots.Protein is localized to ER bodies- an endoplasmic reticulum derived structure. Loss of function mutations lack ER bodies.	O.I.	C.G.	H.G.
12.6	99.3	46.2	At2g01880	814719	PAP7 (PURPLE ACID PHOSPHATASE 7)	F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:unknown;C:endomembrane system;MOBPF	O.I.	C.G.	H.G.
12.5	99.3	195.9	At2g17500	816256	auxin efflux carrier family protein	F:auxin:hydrogen symporter activity;P:auxin polar transport;C:endomembrane system, integral to membrane;PFOBA	O.I.	C.G.	H.G.
12.5	99.3	54.0	At1g21100	838706	O-methyltransferase, putative	F:methyltransferase activity, O-methyltransferase activity, protein dimerization activity;P:unknown;C:cytosol;PBFOM	O.I.	C.G.	H.G.
12.5	99.3	28.7	At2g21560	816695	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBV	O.I.	C.G.	H.G.
12.4	99.3	93.6	At5g06630	830551	proline-rich extensin-like family protein	F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFPOBVA	O.I.	C.G.	H.G.
12.4	99.3	20.4	At5g25160	832587	ZFP3 (ZINC FINGER PROTEIN 3)	Encodes a zinc finger protein containing only a single zinc finger.	O.I.	C.G.	H.G.
12.4	99.3	11.4	At4g36060	829762	basic helix-loop-helix (bHLH) family protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus, chloroplast, cytoplasm;PMOBF	O.I.	C.G.	H.G.
12.2	99.3	143.3	At5g17820	831650	peroxidase 57 (PER57) (P57) (PRXR10)	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:cell wall, membrane, plant-type cell wall;PFOM	O.I.	C.G.	H.G.
12.2	99.3	32.5	At3g45700	823712	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport;C:membrane;PMBOF	O.I.	C.G.	H.G.
12.2	99.3	29.3	At5g18860	832004	inosine-uridine preferring nucleoside hydrolase family protein	F:hydrolase activity;P:biological_process unknown;C:cell wall;BOMPFA	O.I.	C.G.	H.G.
12.0	99.3	161.6	At1g44800	841044	nodulin MtN21 family protein	F:molecular_function unknown;P:unknown;C:membrane;BOPAM	O.I.	C.G.	H.G.

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GSM ID	GSM133127
Assay name	S0_4H_A
GSE experiment	GSE5688: AtGenExpress: Response to sulfate limitation

Microarray experiments to specifically-expressed genes

GSM ID GSM133127 Assay name S0_4H_A GSE experiment GSE5688: AtGenExpress: Response to sulfate limitation

GSM ID GSM133127

Assay name S0_4H_A

GSE experiment GSE5688: AtGenExpress: Response to sulfate limitation