CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM133118

Assay name RIKEN-YAMAUCHI1B

GSE experiment GSE5687: AtGenExpress: Different temperature treatment of seeds

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
398.3 100.0 148.0 At2g23240 816856 plant EC metallothionein-like family 15 protein F:zinc ion binding;P:biological_process unknown;C:unknown;POMB O.I. C.G. H.G.
382.3 100.0 375.7 At2g41260 818725 M17 Late-embryogenesis-abundant gene. Involved in the acquisition of desiccation tolerance during late phase of embryogenesis. O.I. C.G. H.G.
310.6 100.0 416.3 At3g05260 819690 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV O.I. C.G. H.G.
254.8 100.0 175.9 At3g22500 821821 ATECP31 late embryogenesis abundant (LEA) protein O.I. C.G. H.G.
216.7 100.0 135.0 At5g45310 834567 unknown protein F:unknown;P:unknown;C:endomembrane system;OMVBFPA O.I. C.G. H.G.
191.7 100.0 301.5 At3g56350 824802 superoxide dismutase (Mn), putative / manganese superoxide dismutase, putative F:superoxide dismutase activity, metal ion binding;P:superoxide metabolic process, removal of superoxide radicals;C:mitochondrion, endomembrane system;BOFMPAV O.I. C.G. H.G.
181.8 100.0 82.2 At1g77950 844130 AGL67 (AGAMOUS-LIKE 67) F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO O.I. C.G. H.G.
149.6 99.9 49.9 At5g38780 833869 S-adenosyl-L-methionine:carboxyl methyltransferase family protein F:S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity;P:biological_process unknown;C:cellular_component unknown;POBMF O.I. C.G. H.G.
147.5 99.9 59.3 At3g62090 825382 PIL2 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 2) encodes a novel Myc-related bHLH transcription factor, which physically associated with APRR1/TOC1 and is a member of PIF3 transcription factor family. O.I. C.G. H.G.
138.0 99.9 208.8 At5g22470 832308 NAD+ ADP-ribosyltransferase F:NAD+ ADP-ribosyltransferase activity;P:protein amino acid ADP-ribosylation;C:intracellular, nucleus;MOPFBV O.I. C.G. H.G.
133.3 99.9 159.1 At1g14930 838058 major latex protein-related / MLP-related F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P O.I. C.G. H.G.
128.7 99.9 254.1 At2g41280 818727 M10 Encodes a hydrophilic protein similar to Late Embryogenesis Activated (LEA) proteins expressed during embryogenesis, which are thought to be involved in the acquisition of dessication tolerance. O.I. C.G. H.G.
124.3 99.9 122.3 At4g16780 827384 ATHB-2 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2) Encodes a homeodomain-leucine zipper protein that is rapidly and strongly induced by changes in the ratio of red to far-red light. It is also involved in cell expansion and cell proliferation and in the response to auxin. O.I. C.G. H.G.
122.4 99.9 93.5 At1g70840 843421 MLP31 (MLP-LIKE PROTEIN 31) F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P O.I. C.G. H.G.
111.3 99.9 227.3 At5g54190 835507 PORA light-dependent NADPH:protochlorophyllide oxidoreductase A O.I. C.G. H.G.
108.0 99.9 145.6 At1g03790 839408 SOM (SOMNUS) Encodes SOMNUS (SOM), a nucleus-localized CCCH-type zinc finger protein. SOM negatively regulates light-dependent seed germination downstream of PIL5 (AT2G20180). O.I. C.G. H.G.
104.8 99.9 211.9 At3g51810 824344 EM1 (LATE EMBRYOGENESIS ABUNDANT 1) Encodes a ABA-inducible protein that accumulates during seed maturation, in parallel with its corresponding mRNA but with a 3 d delay. During germination, AtEm1 protein undergoes two successive cleavages before being degraded. Both proteins are more stable than the corresponding mRNA. The gene can be activated by the basic leucine zipper transcription factor ABI5. Expressed predominantly in provascular tissues with the strongest expression in the root tip. O.I. C.G. H.G.
104.7 99.9 46.1 At4g02690 828203 glutamate binding F:glutamate binding;P:unknown;C:unknown;BOMPFV O.I. C.G. H.G.
98.0 99.9 311.3 At1g54870 841926 binding / catalytic/ oxidoreductase F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:chloroplast;BOMFPAV O.I. C.G. H.G.
93.0 99.9 155.9 At1g65090 842817 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBV O.I. C.G. H.G.
92.9 99.9 294.4 At2g21490 816688 LEA (DEHYDRIN LEA) F:molecular_function unknown;P:response to water, response to stress;C:cellular_component unknown;PMFOBV O.I. C.G. H.G.
92.1 99.9 201.3 At5g01670 831701 aldose reductase, putative F:oxidoreductase activity;P:oxidation reduction;C:unknown;BMOFPA O.I. C.G. H.G.
90.0 99.9 77.9 At2g42000 818800 plant EC metallothionein-like family 15 protein F:zinc ion binding;P:biological_process unknown;C:unknown;PMOBF O.I. C.G. H.G.
88.7 99.9 233.6 At2g40170 818608 GEA6 (LATE EMBRYOGENESIS ABUNDANT 6) Encodes a group 1 LEA gene that is activated by direct binding of ABI5 to its promoter and is involved in response to ABA. Is required for normal seed development. Involved in regulating the timing of dessication tolerance and rate of water loss during seed maturation. O.I. C.G. H.G.
88.1 99.9 361.5 At1g48130 841231 ATPER1 encodes a protein similar to the 1-cysteine (1-Cys) peroxiredoxin family of antioxidants. Expression is limited to seed (aleurone and embryo) and is not induced by ABA or drought. O.I. C.G. H.G.
87.6 99.9 358.0 At1g14950 838060 major latex protein-related / MLP-related F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P O.I. C.G. H.G.
85.8 99.9 131.8 At4g10020 826593 AtHSD5 (hydroxysteroid dehydrogenase 5) F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endomembrane system;BOMFPAV O.I. C.G. H.G.
83.7 99.9 121.5 At1g64110 842716 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:endomembrane system;BOMFPAV O.I. C.G. H.G.
82.8 99.9 433.9 At3g22640 821835 PAP85 F:nutrient reservoir activity;P:biological_process unknown;C:plant-type cell wall;POM O.I. C.G. H.G.
80.5 99.9 96.8 At1g15330 838102 CBS domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOBA O.I. C.G. H.G.
78.9 99.9 316.7 At1g75830 843916 LCR67 Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2. O.I. C.G. H.G.
76.4 99.9 208.4 At2g15010 815990 thionin, putative Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660. O.I. C.G. H.G.
76.0 99.9 294.5 At2g47770 819389 benzodiazepine receptor-related F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;BMOPAF O.I. C.G. H.G.
73.6 99.9 98.5 At5g63650 836485 SNRK2.5 (SNF1-RELATED PROTEIN KINASE 2.5) encodes a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress. O.I. C.G. H.G.
69.8 99.9 271.8 At3g54940 824659 - - O.I. C.G. H.G.
66.3 99.8 250.0 At5g57550 835859 XTR3 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 3) xyloglucan endotransglycosylase-related protein (XTR3) O.I. C.G. H.G.
65.6 99.8 303.5 At5g50600 835129 AtHSD1 (hydroxysteroid dehydrogenase 1) F:oxidoreductase activity, binding, catalytic activity;P:response to brassinosteroid stimulus, response to abscisic acid stimulus;C:endomembrane system;BOMFPAV O.I. C.G. H.G.
65.2 99.8 263.7 At1g05510 837053 - Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. O.I. C.G. H.G.
65.2 99.8 226.2 At1g17810 838359 BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN) beta-tonoplast intrinsic protein (beta-TIP) mRNA, complete O.I. C.G. H.G.
64.7 99.8 98.5 At2g19900 816509 ATNADP-ME1 (NADP-malic enzyme 1) The malic enzyme (EC 1.1.1.40) encoded by AtNADP-ME1 is expressed in response to developmental and cell-specific signals. O.I. C.G. H.G.
63.6 99.8 126.1 At3g58450 825014 universal stress protein (USP) family protein F:molecular_function unknown;P:response to stress;C:cellular_component unknown;BPAOFM O.I. C.G. H.G.
63.4 99.8 271.5 At2g35300 818097 late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein F:molecular_function unknown;P:embryonic development ending in seed dormancy, pollen tube development;C:cellular_component unknown;P O.I. C.G. H.G.
62.9 99.8 80.2 At5g27730 832835 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBMP O.I. C.G. H.G.
62.6 99.8 63.9 At2g41070 818706 EEL (ENHANCED EM LEVEL) Transcription factor homologous to ABI5. Regulates AtEm1 expression by binding directly at the AtEm1 promoter. Located in the nucleus and expressed during seed maturation in the cotyledons and later in the whole embryo. O.I. C.G. H.G.
62.0 99.8 363.1 At3g01570 821106 glycine-rich protein / oleosin F:molecular_function unknown;P:lipid storage;C:monolayer-surrounded lipid storage body, integral to membrane, membrane;P O.I. C.G. H.G.
61.5 99.8 55.5 At3g24650 822061 ABI3 (ABA INSENSITIVE 3) Homologous to the maize transcription factor Viviparous-1. Full length ABI3 protein binds to the highly conserved RY motif [DNA motif CATGCA(TG)], present in many seed-specific promoters, and the B3 domains of this transcription factor is necessary for the specific interaction with the RY element. Transcriptional activity of ABI3 requires the B3 DNA-binding domain and an activation domain. In addition to the known N-terminal-located activation domain, a second transcription activation domain was found in the B1 region of ABI3. ABI3 is essential for seed maturation. Regulator of the transition between embryo maturation and early seedling development. Putative seed-specific transcriptional activator. Mutants exhibit decreased responsiveness to ABA suggesting that ABI3 protein participates in the ABA perception/transduction cascade. Based on double mutant analyses, ABI3 interacts genetically with both FUS3 and LEC1 and is involved in controlling accumulation of chlorophyll and anthocyanins, sensitivity to abscisic acid, and expression of the members of the 12S storage protein gene family. In addition, both FUS3 and LEC1 regulate positively the abundance of the ABI3 protein in the seed. O.I. C.G. H.G.
60.6 99.8 200.8 At5g45690 834608 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPF O.I. C.G. H.G.
60.6 99.8 62.3 At5g53660 835447 AtGRF7 (GROWTH-REGULATING FACTOR 7) Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in shoot and flower. O.I. C.G. H.G.
57.1 99.8 37.9 At4g38440 830001 - F:unknown;P:unknown;C:chloroplast;MFPOB O.I. C.G. H.G.
56.8 99.8 28.4 At3g03620 821204 MATE efflux family protein F:drug transporter activity, antiporter activity, transporter activity;P:multidrug transport;C:membrane;BPOFMA O.I. C.G. H.G.
55.7 99.8 70.9 At2g35820 818155 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPO O.I. C.G. H.G.
55.0 99.8 135.9 At4g03200 828041 catalytic F:catalytic activity;P:unknown;C:chloroplast;OBMAFP O.I. C.G. H.G.
53.7 99.8 104.2 At4g09600 826545 GASA3 (GAST1 PROTEIN HOMOLOG 3) One of GASA gene family which is related to a GA-stimulated transcript (GAST) from tomato. O.I. C.G. H.G.
53.7 99.8 47.8 At1g60200 842315 splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein F:nucleotide binding, nucleic acid binding;P:mRNA processing;C:chloroplast;MOFBPVA O.I. C.G. H.G.
52.1 99.8 53.4 At2g34020 817963 calcium ion binding F:calcium ion binding;P:biological_process unknown;C:unknown;POMBF O.I. C.G. H.G.
52.0 99.8 44.5 At1g23070 838915 unknown protein F:unknown;P:biological_process unknown;C:unknown;MPFO O.I. C.G. H.G.
49.2 99.8 105.7 At1g27990 839692 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
48.8 99.8 325.2 At3g27660 822388 OLEO4 (OLEOSIN 4) Encodes oleosin4 (Plant Cell, 2006, 18:1961), a protein found in oil bodies, involved in seed lipid accumulation. Functions in freezing tolerance of seeds. Note: also referred to as OLE3 in Plant Journal 2008, 55:798. O.I. C.G. H.G.
48.1 99.8 73.8 At1g72100 843541 late embryogenesis abundant domain-containing protein / LEA domain-containing protein F:unknown;P:embryonic development ending in seed dormancy;C:endomembrane system;BPOMFAV O.I. C.G. H.G.
46.0 99.8 407.5 At5g54740 835563 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding, nutrient reservoir activity;P:lipid transport, pollen development;C:endomembrane system;PO O.I. C.G. H.G.
46.0 99.8 161.4 At1g29090 839784 peptidase C1A papain family protein F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAF O.I. C.G. H.G.
45.8 99.8 276.4 At1g73190 843653 TIP3 Moves to the Protein Storage Vacuole in a Golgi independent manner O.I. C.G. H.G.
45.6 99.8 235.9 At1g09570 837483 PHYA (PHYTOCHROME A) Light-labile cytoplasmic red/far-red light photoreceptor involved in the regulation of photomorphogenesis. It exists in two inter-convertible forms: Pr and Pfr (active) and functions as a dimer.The N terminus carries a single tetrapyrrole chromophore, and the C terminus is involved in dimerization. It is the sole photoreceptor mediating the FR high irradiance response (HIR). Major regulator in red-light induction of phototropic enhancement. Involved in the regulation of de-etiolation. Involved in gravitropism and phototropism. Requires FHY1 for nuclear accumulation. O.I. C.G. H.G.
45.5 99.8 36.2 At3g54510 824616 early-responsive to dehydration protein-related / ERD protein-related F:unknown;P:unknown;C:endomembrane system, membrane;FPMO O.I. C.G. H.G.
44.9 99.8 28.1 At2g19930 816512 RNA-dependent RNA polymerase family protein F:RNA-directed RNA polymerase activity;P:posttranscriptional gene silencing;C:cellular_component unknown;FPMO O.I. C.G. H.G.
44.7 99.8 104.1 At1g67100 843030 LBD40 (LOB DOMAIN-CONTAINING PROTEIN 40) F:unknown;P:response to gibberellin stimulus;C:unknown;P O.I. C.G. H.G.
44.5 99.8 16.7 At3g14880 820717 - F:molecular_function unknown;P:biological_process unknown;C:unknown;PM O.I. C.G. H.G.
43.8 99.8 410.8 At4g14130 827051 XTR7 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 7) xyloglucan endotransglycosylase-related protein (XTR7) O.I. C.G. H.G.
43.2 99.8 51.4 At4g25580 828663 stress-responsive protein-related F:unknown;P:unknown;C:cellular_component unknown;PMOFBV O.I. C.G. H.G.
42.9 99.8 150.1 At2g21820 816718 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
42.5 99.8 69.9 At3g26770 822290 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAV O.I. C.G. H.G.
42.3 99.8 86.8 At3g13340 820534 WD-40 repeat family protein F:molecular_function unknown;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;BMFOPA O.I. C.G. H.G.
39.8 99.8 66.8 At4g02280 828081 SUS3 (sucrose synthase 3) Encodes a protein with sucrose synthase activity (SUS3). O.I. C.G. H.G.
39.6 99.8 170.1 At5g62490 836369 ATHVA22B Part of the AtHVA22 family. Protein expression is ABA- and stress-inducible. O.I. C.G. H.G.
39.5 99.8 78.3 At4g09610 826546 GASA2 (GAST1 PROTEIN HOMOLOG 2) F:molecular_function unknown;P:response to gibberellin stimulus;C:endomembrane system;P O.I. C.G. H.G.
38.8 99.8 49.1 At3g48580 824018 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative F:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, apoplast, cell wall;PBFOA O.I. C.G. H.G.
36.9 99.7 162.5 At1g62710 842569 BETA-VPE (BETA VACUOLAR PROCESSING ENZYME) Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteases that is expressed specifically in seeds and is essential for the proper processing of storage proteins. O.I. C.G. H.G.
36.2 99.7 102.1 At3g53040 824470 late embryogenesis abundant protein, putative / LEA protein, putative F:unknown;P:embryonic development ending in seed dormancy;C:unknown;MBOFPAV O.I. C.G. H.G.
36.2 99.7 57.9 At4g24150 828515 AtGRF8 (GROWTH-REGULATING FACTOR 8) Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in shoot and flower. O.I. C.G. H.G.
36.1 99.7 14.2 At5g05550 830438 transcription factor F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PMO O.I. C.G. H.G.
35.8 99.7 33.4 At1g48660 841288 auxin-responsive GH3 family protein F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;OPBMF O.I. C.G. H.G.
35.0 99.7 115.0 At3g21370 821691 BGLU19 (BETA GLUCOSIDASE 19) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA O.I. C.G. H.G.
35.0 99.7 49.4 At5g02580 831095 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
34.5 99.7 41.6 At2g20180 816538 PIL5 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 5) Encodes a novel Myc-related bHLH transcription factor that has transcriptional activation activity in the dark. It is a key negative regulator of phytochrome-mediated seed germination and acts by inhibiting chlorophyll biosynthesis, light-mediated suppression of hypocotyl elongation and far-red light-mediated suppression of seed germination, and promoting negative gravitropism in hypocotyls. Light reduces this activity in a phy-dependent manner. The protein preferentially interacts with the Pfr forms of Phytochrome A (PhyA) and Phytochrome B (PhyB), is physically associated with APRR1/TOC1 and is degraded in red (R) and far-red (FR) light through the ubiquitin (ub)-26S proteasome pathway to optimize photomorphogenic development in Arabidopsis. It also negatively regulates GA3 oxidase expression. O.I. C.G. H.G.
34.3 99.7 37.3 At1g36070 840511 WD-40 repeat family protein F:molecular_function unknown;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;MBFOPA O.I. C.G. H.G.
33.5 99.7 47.6 At5g19100 832030 extracellular dermal glycoprotein-related / EDGP-related F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;P O.I. C.G. H.G.
32.8 99.7 43.3 At3g23790 821961 AMP-binding protein, putative F:catalytic activity;P:metabolic process;C:chloroplast envelope;BOMFPAV O.I. C.G. H.G.
32.7 99.7 317.2 At5g03860 831690 MLS (MALATE SYNTHASE) Encodes a protein with malate synthase activity. O.I. C.G. H.G.
32.4 99.7 37.0 At3g22490 821820 late embryogenesis abundant protein, putative / LEA protein, putative F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;PBMVAO O.I. C.G. H.G.
32.3 99.7 113.6 At1g50290 841451 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:cytosol;P O.I. C.G. H.G.
32.2 99.7 32.8 At1g53450 841780 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
32.1 99.7 174.0 At5g66780 836811 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
32.1 99.7 51.3 At5g60760 836197 2-phosphoglycerate kinase-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPBAFV O.I. C.G. H.G.
31.8 99.7 287.2 At5g40420 834040 OLEO2 (OLEOSIN 2) Encodes oleosin2, a protein found in oil bodies, involved in seed lipid accumulation. Suppression of OLEO1 (and OLEO2) resulted in an aberrant phenotype of embryo cells that contain unusually large oilbodies that are not normally observed in seeds. Changes in the size of oilbodies caused disruption of storage organelles, altering accumulation of lipids and proteins and causing delay in germination. Functions in freezing tolerance of seeds. O.I. C.G. H.G.
31.8 99.7 27.8 At5g65550 836681 UDP-glucoronosyl/UDP-glucosyl transferase family protein F:transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBVOF O.I. C.G. H.G.
31.7 99.7 10.0 At5g48780 834936 disease resistance protein (TIR-NBS class), putative F:transmembrane receptor activity, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PBOMFA O.I. C.G. H.G.
31.6 99.7 36.3 At5g18450 831963 AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought. O.I. C.G. H.G.
31.5 99.7 126.5 At5g07330 830624 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P O.I. C.G. H.G.
31.5 99.7 28.9 At4g01970 828186 AtSTS (Arabidopsis thaliana stachyose synthase) Encodes a putative stachyose synthetase. O.I. C.G. H.G.
31.4 99.7 355.0 At5g66400 836772 RAB18 (RESPONSIVE TO ABA 18) Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. ABA- and drought-induced glycine-rice dehydrin protein. The ABA-induced expression of RAB18 was reduced following ACC application, indicating that ethylene inhibits the ABA signaling pathway. RAB18 is also expressed in response to the formation of the phospholipid diacylglycerol pyrophosphate. COR47 and RAB18 double overexpressor plants are cold tolerant. Expressed in guard cells. O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
398.3	100.0	148.0	At2g23240	816856	plant EC metallothionein-like family 15 protein	F:zinc ion binding;P:biological_process unknown;C:unknown;POMB	O.I.	C.G.	H.G.
382.3	100.0	375.7	At2g41260	818725	M17	Late-embryogenesis-abundant gene. Involved in the acquisition of desiccation tolerance during late phase of embryogenesis.	O.I.	C.G.	H.G.
310.6	100.0	416.3	At3g05260	819690	short-chain dehydrogenase/reductase (SDR) family protein	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV	O.I.	C.G.	H.G.
254.8	100.0	175.9	At3g22500	821821	ATECP31	late embryogenesis abundant (LEA) protein	O.I.	C.G.	H.G.
216.7	100.0	135.0	At5g45310	834567	unknown protein	F:unknown;P:unknown;C:endomembrane system;OMVBFPA	O.I.	C.G.	H.G.
191.7	100.0	301.5	At3g56350	824802	superoxide dismutase (Mn), putative / manganese superoxide dismutase, putative	F:superoxide dismutase activity, metal ion binding;P:superoxide metabolic process, removal of superoxide radicals;C:mitochondrion, endomembrane system;BOFMPAV	O.I.	C.G.	H.G.
181.8	100.0	82.2	At1g77950	844130	AGL67 (AGAMOUS-LIKE 67)	F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO	O.I.	C.G.	H.G.
149.6	99.9	49.9	At5g38780	833869	S-adenosyl-L-methionine:carboxyl methyltransferase family protein	F:S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity;P:biological_process unknown;C:cellular_component unknown;POBMF	O.I.	C.G.	H.G.
147.5	99.9	59.3	At3g62090	825382	PIL2 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 2)	encodes a novel Myc-related bHLH transcription factor, which physically associated with APRR1/TOC1 and is a member of PIF3 transcription factor family.	O.I.	C.G.	H.G.
138.0	99.9	208.8	At5g22470	832308	NAD+ ADP-ribosyltransferase	F:NAD+ ADP-ribosyltransferase activity;P:protein amino acid ADP-ribosylation;C:intracellular, nucleus;MOPFBV	O.I.	C.G.	H.G.
133.3	99.9	159.1	At1g14930	838058	major latex protein-related / MLP-related	F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P	O.I.	C.G.	H.G.
128.7	99.9	254.1	At2g41280	818727	M10	Encodes a hydrophilic protein similar to Late Embryogenesis Activated (LEA) proteins expressed during embryogenesis, which are thought to be involved in the acquisition of dessication tolerance.	O.I.	C.G.	H.G.
124.3	99.9	122.3	At4g16780	827384	ATHB-2 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2)	Encodes a homeodomain-leucine zipper protein that is rapidly and strongly induced by changes in the ratio of red to far-red light. It is also involved in cell expansion and cell proliferation and in the response to auxin.	O.I.	C.G.	H.G.
122.4	99.9	93.5	At1g70840	843421	MLP31 (MLP-LIKE PROTEIN 31)	F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P	O.I.	C.G.	H.G.
111.3	99.9	227.3	At5g54190	835507	PORA	light-dependent NADPH:protochlorophyllide oxidoreductase A	O.I.	C.G.	H.G.
108.0	99.9	145.6	At1g03790	839408	SOM (SOMNUS)	Encodes SOMNUS (SOM), a nucleus-localized CCCH-type zinc finger protein. SOM negatively regulates light-dependent seed germination downstream of PIL5 (AT2G20180).	O.I.	C.G.	H.G.
104.8	99.9	211.9	At3g51810	824344	EM1 (LATE EMBRYOGENESIS ABUNDANT 1)	Encodes a ABA-inducible protein that accumulates during seed maturation, in parallel with its corresponding mRNA but with a 3 d delay. During germination, AtEm1 protein undergoes two successive cleavages before being degraded. Both proteins are more stable than the corresponding mRNA. The gene can be activated by the basic leucine zipper transcription factor ABI5. Expressed predominantly in provascular tissues with the strongest expression in the root tip.	O.I.	C.G.	H.G.
104.7	99.9	46.1	At4g02690	828203	glutamate binding	F:glutamate binding;P:unknown;C:unknown;BOMPFV	O.I.	C.G.	H.G.
98.0	99.9	311.3	At1g54870	841926	binding / catalytic/ oxidoreductase	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:chloroplast;BOMFPAV	O.I.	C.G.	H.G.
93.0	99.9	155.9	At1g65090	842817	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBV	O.I.	C.G.	H.G.
92.9	99.9	294.4	At2g21490	816688	LEA (DEHYDRIN LEA)	F:molecular_function unknown;P:response to water, response to stress;C:cellular_component unknown;PMFOBV	O.I.	C.G.	H.G.
92.1	99.9	201.3	At5g01670	831701	aldose reductase, putative	F:oxidoreductase activity;P:oxidation reduction;C:unknown;BMOFPA	O.I.	C.G.	H.G.
90.0	99.9	77.9	At2g42000	818800	plant EC metallothionein-like family 15 protein	F:zinc ion binding;P:biological_process unknown;C:unknown;PMOBF	O.I.	C.G.	H.G.
88.7	99.9	233.6	At2g40170	818608	GEA6 (LATE EMBRYOGENESIS ABUNDANT 6)	Encodes a group 1 LEA gene that is activated by direct binding of ABI5 to its promoter and is involved in response to ABA. Is required for normal seed development. Involved in regulating the timing of dessication tolerance and rate of water loss during seed maturation.	O.I.	C.G.	H.G.
88.1	99.9	361.5	At1g48130	841231	ATPER1	encodes a protein similar to the 1-cysteine (1-Cys) peroxiredoxin family of antioxidants. Expression is limited to seed (aleurone and embryo) and is not induced by ABA or drought.	O.I.	C.G.	H.G.
87.6	99.9	358.0	At1g14950	838060	major latex protein-related / MLP-related	F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P	O.I.	C.G.	H.G.
85.8	99.9	131.8	At4g10020	826593	AtHSD5 (hydroxysteroid dehydrogenase 5)	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endomembrane system;BOMFPAV	O.I.	C.G.	H.G.
83.7	99.9	121.5	At1g64110	842716	AAA-type ATPase family protein	F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:endomembrane system;BOMFPAV	O.I.	C.G.	H.G.
82.8	99.9	433.9	At3g22640	821835	PAP85	F:nutrient reservoir activity;P:biological_process unknown;C:plant-type cell wall;POM	O.I.	C.G.	H.G.
80.5	99.9	96.8	At1g15330	838102	CBS domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOBA	O.I.	C.G.	H.G.
78.9	99.9	316.7	At1g75830	843916	LCR67	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.	O.I.	C.G.	H.G.
76.4	99.9	208.4	At2g15010	815990	thionin, putative	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.	O.I.	C.G.	H.G.
76.0	99.9	294.5	At2g47770	819389	benzodiazepine receptor-related	F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;BMOPAF	O.I.	C.G.	H.G.
73.6	99.9	98.5	At5g63650	836485	SNRK2.5 (SNF1-RELATED PROTEIN KINASE 2.5)	encodes a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress.	O.I.	C.G.	H.G.
69.8	99.9	271.8	At3g54940	824659	-	-	O.I.	C.G.	H.G.
66.3	99.8	250.0	At5g57550	835859	XTR3 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 3)	xyloglucan endotransglycosylase-related protein (XTR3)	O.I.	C.G.	H.G.
65.6	99.8	303.5	At5g50600	835129	AtHSD1 (hydroxysteroid dehydrogenase 1)	F:oxidoreductase activity, binding, catalytic activity;P:response to brassinosteroid stimulus, response to abscisic acid stimulus;C:endomembrane system;BOMFPAV	O.I.	C.G.	H.G.
65.2	99.8	263.7	At1g05510	837053	-	Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.	O.I.	C.G.	H.G.
65.2	99.8	226.2	At1g17810	838359	BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN)	beta-tonoplast intrinsic protein (beta-TIP) mRNA, complete	O.I.	C.G.	H.G.
64.7	99.8	98.5	At2g19900	816509	ATNADP-ME1 (NADP-malic enzyme 1)	The malic enzyme (EC 1.1.1.40) encoded by AtNADP-ME1 is expressed in response to developmental and cell-specific signals.	O.I.	C.G.	H.G.
63.6	99.8	126.1	At3g58450	825014	universal stress protein (USP) family protein	F:molecular_function unknown;P:response to stress;C:cellular_component unknown;BPAOFM	O.I.	C.G.	H.G.
63.4	99.8	271.5	At2g35300	818097	late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein	F:molecular_function unknown;P:embryonic development ending in seed dormancy, pollen tube development;C:cellular_component unknown;P	O.I.	C.G.	H.G.
62.9	99.8	80.2	At5g27730	832835	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBMP	O.I.	C.G.	H.G.
62.6	99.8	63.9	At2g41070	818706	EEL (ENHANCED EM LEVEL)	Transcription factor homologous to ABI5. Regulates AtEm1 expression by binding directly at the AtEm1 promoter. Located in the nucleus and expressed during seed maturation in the cotyledons and later in the whole embryo.	O.I.	C.G.	H.G.
62.0	99.8	363.1	At3g01570	821106	glycine-rich protein / oleosin	F:molecular_function unknown;P:lipid storage;C:monolayer-surrounded lipid storage body, integral to membrane, membrane;P	O.I.	C.G.	H.G.
61.5	99.8	55.5	At3g24650	822061	ABI3 (ABA INSENSITIVE 3)	Homologous to the maize transcription factor Viviparous-1. Full length ABI3 protein binds to the highly conserved RY motif [DNA motif CATGCA(TG)], present in many seed-specific promoters, and the B3 domains of this transcription factor is necessary for the specific interaction with the RY element. Transcriptional activity of ABI3 requires the B3 DNA-binding domain and an activation domain. In addition to the known N-terminal-located activation domain, a second transcription activation domain was found in the B1 region of ABI3. ABI3 is essential for seed maturation. Regulator of the transition between embryo maturation and early seedling development. Putative seed-specific transcriptional activator. Mutants exhibit decreased responsiveness to ABA suggesting that ABI3 protein participates in the ABA perception/transduction cascade. Based on double mutant analyses, ABI3 interacts genetically with both FUS3 and LEC1 and is involved in controlling accumulation of chlorophyll and anthocyanins, sensitivity to abscisic acid, and expression of the members of the 12S storage protein gene family. In addition, both FUS3 and LEC1 regulate positively the abundance of the ABI3 protein in the seed.	O.I.	C.G.	H.G.
60.6	99.8	200.8	At5g45690	834608	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPF	O.I.	C.G.	H.G.
60.6	99.8	62.3	At5g53660	835447	AtGRF7 (GROWTH-REGULATING FACTOR 7)	Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in shoot and flower.	O.I.	C.G.	H.G.
57.1	99.8	37.9	At4g38440	830001	-	F:unknown;P:unknown;C:chloroplast;MFPOB	O.I.	C.G.	H.G.
56.8	99.8	28.4	At3g03620	821204	MATE efflux family protein	F:drug transporter activity, antiporter activity, transporter activity;P:multidrug transport;C:membrane;BPOFMA	O.I.	C.G.	H.G.
55.7	99.8	70.9	At2g35820	818155	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPO	O.I.	C.G.	H.G.
55.0	99.8	135.9	At4g03200	828041	catalytic	F:catalytic activity;P:unknown;C:chloroplast;OBMAFP	O.I.	C.G.	H.G.
53.7	99.8	104.2	At4g09600	826545	GASA3 (GAST1 PROTEIN HOMOLOG 3)	One of GASA gene family which is related to a GA-stimulated transcript (GAST) from tomato.	O.I.	C.G.	H.G.
53.7	99.8	47.8	At1g60200	842315	splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein	F:nucleotide binding, nucleic acid binding;P:mRNA processing;C:chloroplast;MOFBPVA	O.I.	C.G.	H.G.
52.1	99.8	53.4	At2g34020	817963	calcium ion binding	F:calcium ion binding;P:biological_process unknown;C:unknown;POMBF	O.I.	C.G.	H.G.
52.0	99.8	44.5	At1g23070	838915	unknown protein	F:unknown;P:biological_process unknown;C:unknown;MPFO	O.I.	C.G.	H.G.
49.2	99.8	105.7	At1g27990	839692	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
48.8	99.8	325.2	At3g27660	822388	OLEO4 (OLEOSIN 4)	Encodes oleosin4 (Plant Cell, 2006, 18:1961), a protein found in oil bodies, involved in seed lipid accumulation. Functions in freezing tolerance of seeds. Note: also referred to as OLE3 in Plant Journal 2008, 55:798.	O.I.	C.G.	H.G.
48.1	99.8	73.8	At1g72100	843541	late embryogenesis abundant domain-containing protein / LEA domain-containing protein	F:unknown;P:embryonic development ending in seed dormancy;C:endomembrane system;BPOMFAV	O.I.	C.G.	H.G.
46.0	99.8	407.5	At5g54740	835563	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding, nutrient reservoir activity;P:lipid transport, pollen development;C:endomembrane system;PO	O.I.	C.G.	H.G.
46.0	99.8	161.4	At1g29090	839784	peptidase C1A papain family protein	F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAF	O.I.	C.G.	H.G.
45.8	99.8	276.4	At1g73190	843653	TIP3	Moves to the Protein Storage Vacuole in a Golgi independent manner	O.I.	C.G.	H.G.
45.6	99.8	235.9	At1g09570	837483	PHYA (PHYTOCHROME A)	Light-labile cytoplasmic red/far-red light photoreceptor involved in the regulation of photomorphogenesis. It exists in two inter-convertible forms: Pr and Pfr (active) and functions as a dimer.The N terminus carries a single tetrapyrrole chromophore, and the C terminus is involved in dimerization. It is the sole photoreceptor mediating the FR high irradiance response (HIR). Major regulator in red-light induction of phototropic enhancement. Involved in the regulation of de-etiolation. Involved in gravitropism and phototropism. Requires FHY1 for nuclear accumulation.	O.I.	C.G.	H.G.
45.5	99.8	36.2	At3g54510	824616	early-responsive to dehydration protein-related / ERD protein-related	F:unknown;P:unknown;C:endomembrane system, membrane;FPMO	O.I.	C.G.	H.G.
44.9	99.8	28.1	At2g19930	816512	RNA-dependent RNA polymerase family protein	F:RNA-directed RNA polymerase activity;P:posttranscriptional gene silencing;C:cellular_component unknown;FPMO	O.I.	C.G.	H.G.
44.7	99.8	104.1	At1g67100	843030	LBD40 (LOB DOMAIN-CONTAINING PROTEIN 40)	F:unknown;P:response to gibberellin stimulus;C:unknown;P	O.I.	C.G.	H.G.
44.5	99.8	16.7	At3g14880	820717	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;PM	O.I.	C.G.	H.G.
43.8	99.8	410.8	At4g14130	827051	XTR7 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 7)	xyloglucan endotransglycosylase-related protein (XTR7)	O.I.	C.G.	H.G.
43.2	99.8	51.4	At4g25580	828663	stress-responsive protein-related	F:unknown;P:unknown;C:cellular_component unknown;PMOFBV	O.I.	C.G.	H.G.
42.9	99.8	150.1	At2g21820	816718	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
42.5	99.8	69.9	At3g26770	822290	short-chain dehydrogenase/reductase (SDR) family protein	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAV	O.I.	C.G.	H.G.
42.3	99.8	86.8	At3g13340	820534	WD-40 repeat family protein	F:molecular_function unknown;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;BMFOPA	O.I.	C.G.	H.G.
39.8	99.8	66.8	At4g02280	828081	SUS3 (sucrose synthase 3)	Encodes a protein with sucrose synthase activity (SUS3).	O.I.	C.G.	H.G.
39.6	99.8	170.1	At5g62490	836369	ATHVA22B	Part of the AtHVA22 family. Protein expression is ABA- and stress-inducible.	O.I.	C.G.	H.G.
39.5	99.8	78.3	At4g09610	826546	GASA2 (GAST1 PROTEIN HOMOLOG 2)	F:molecular_function unknown;P:response to gibberellin stimulus;C:endomembrane system;P	O.I.	C.G.	H.G.
38.8	99.8	49.1	At3g48580	824018	xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative	F:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, apoplast, cell wall;PBFOA	O.I.	C.G.	H.G.
36.9	99.7	162.5	At1g62710	842569	BETA-VPE (BETA VACUOLAR PROCESSING ENZYME)	Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteases that is expressed specifically in seeds and is essential for the proper processing of storage proteins.	O.I.	C.G.	H.G.
36.2	99.7	102.1	At3g53040	824470	late embryogenesis abundant protein, putative / LEA protein, putative	F:unknown;P:embryonic development ending in seed dormancy;C:unknown;MBOFPAV	O.I.	C.G.	H.G.
36.2	99.7	57.9	At4g24150	828515	AtGRF8 (GROWTH-REGULATING FACTOR 8)	Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in shoot and flower.	O.I.	C.G.	H.G.
36.1	99.7	14.2	At5g05550	830438	transcription factor	F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
35.8	99.7	33.4	At1g48660	841288	auxin-responsive GH3 family protein	F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;OPBMF	O.I.	C.G.	H.G.
35.0	99.7	115.0	At3g21370	821691	BGLU19 (BETA GLUCOSIDASE 19)	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA	O.I.	C.G.	H.G.
35.0	99.7	49.4	At5g02580	831095	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
34.5	99.7	41.6	At2g20180	816538	PIL5 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 5)	Encodes a novel Myc-related bHLH transcription factor that has transcriptional activation activity in the dark. It is a key negative regulator of phytochrome-mediated seed germination and acts by inhibiting chlorophyll biosynthesis, light-mediated suppression of hypocotyl elongation and far-red light-mediated suppression of seed germination, and promoting negative gravitropism in hypocotyls. Light reduces this activity in a phy-dependent manner. The protein preferentially interacts with the Pfr forms of Phytochrome A (PhyA) and Phytochrome B (PhyB), is physically associated with APRR1/TOC1 and is degraded in red (R) and far-red (FR) light through the ubiquitin (ub)-26S proteasome pathway to optimize photomorphogenic development in Arabidopsis. It also negatively regulates GA3 oxidase expression.	O.I.	C.G.	H.G.
34.3	99.7	37.3	At1g36070	840511	WD-40 repeat family protein	F:molecular_function unknown;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;MBFOPA	O.I.	C.G.	H.G.
33.5	99.7	47.6	At5g19100	832030	extracellular dermal glycoprotein-related / EDGP-related	F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;P	O.I.	C.G.	H.G.
32.8	99.7	43.3	At3g23790	821961	AMP-binding protein, putative	F:catalytic activity;P:metabolic process;C:chloroplast envelope;BOMFPAV	O.I.	C.G.	H.G.
32.7	99.7	317.2	At5g03860	831690	MLS (MALATE SYNTHASE)	Encodes a protein with malate synthase activity.	O.I.	C.G.	H.G.
32.4	99.7	37.0	At3g22490	821820	late embryogenesis abundant protein, putative / LEA protein, putative	F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;PBMVAO	O.I.	C.G.	H.G.
32.3	99.7	113.6	At1g50290	841451	unknown protein	F:molecular_function unknown;P:response to oxidative stress;C:cytosol;P	O.I.	C.G.	H.G.
32.2	99.7	32.8	At1g53450	841780	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
32.1	99.7	174.0	At5g66780	836811	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
32.1	99.7	51.3	At5g60760	836197	2-phosphoglycerate kinase-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPBAFV	O.I.	C.G.	H.G.
31.8	99.7	287.2	At5g40420	834040	OLEO2 (OLEOSIN 2)	Encodes oleosin2, a protein found in oil bodies, involved in seed lipid accumulation. Suppression of OLEO1 (and OLEO2) resulted in an aberrant phenotype of embryo cells that contain unusually large oilbodies that are not normally observed in seeds. Changes in the size of oilbodies caused disruption of storage organelles, altering accumulation of lipids and proteins and causing delay in germination. Functions in freezing tolerance of seeds.	O.I.	C.G.	H.G.
31.8	99.7	27.8	At5g65550	836681	UDP-glucoronosyl/UDP-glucosyl transferase family protein	F:transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBVOF	O.I.	C.G.	H.G.
31.7	99.7	10.0	At5g48780	834936	disease resistance protein (TIR-NBS class), putative	F:transmembrane receptor activity, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PBOMFA	O.I.	C.G.	H.G.
31.6	99.7	36.3	At5g18450	831963	AP2 domain-containing transcription factor, putative	encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought.	O.I.	C.G.	H.G.
31.5	99.7	126.5	At5g07330	830624	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P	O.I.	C.G.	H.G.
31.5	99.7	28.9	At4g01970	828186	AtSTS (Arabidopsis thaliana stachyose synthase)	Encodes a putative stachyose synthetase.	O.I.	C.G.	H.G.
31.4	99.7	355.0	At5g66400	836772	RAB18 (RESPONSIVE TO ABA 18)	Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. ABA- and drought-induced glycine-rice dehydrin protein. The ABA-induced expression of RAB18 was reduced following ACC application, indicating that ethylene inhibits the ABA signaling pathway. RAB18 is also expressed in response to the formation of the phospholipid diacylglycerol pyrophosphate. COR47 and RAB18 double overexpressor plants are cold tolerant. Expressed in guard cells.	O.I.	C.G.	H.G.

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GSM ID	GSM133118
Assay name	RIKEN-YAMAUCHI1B
GSE experiment	GSE5687: AtGenExpress: Different temperature treatment of seeds

Microarray experiments to specifically-expressed genes

GSM ID GSM133118 Assay name RIKEN-YAMAUCHI1B GSE experiment GSE5687: AtGenExpress: Different temperature treatment of seeds

GSM ID GSM133118

Assay name RIKEN-YAMAUCHI1B

GSE experiment GSE5687: AtGenExpress: Different temperature treatment of seeds