Microarray experiments to specifically-expressed genes

GSM ID GSM133117
Assay name RIKEN-YAMAUCHI1A
GSE experiment GSE5687: AtGenExpress: Different temperature treatment of seeds

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
1675.6100.0167.0At5g38780833869S-adenosyl-L-methionine:carboxyl methyltransferase family proteinF:S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity;P:biological_process unknown;C:cellular_component unknown;POBMFO.I.C.G.H.G.
1614.8100.0245.0At1g77950844130AGL67 (AGAMOUS-LIKE 67)F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PMFOO.I.C.G.H.G.
1261.6100.0263.4At2g23240816856plant EC metallothionein-like family 15 proteinF:zinc ion binding;P:biological_process unknown;C:unknown;POMBO.I.C.G.H.G.
1021.4100.0262.6At2g42000818800plant EC metallothionein-like family 15 proteinF:zinc ion binding;P:biological_process unknown;C:unknown;PMOBFO.I.C.G.H.G.
981.3100.0152.9At3g62090825382PIL2 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 2)encodes a novel Myc-related bHLH transcription factor, which physically associated with APRR1/TOC1 and is a member of PIF3 transcription factor family.O.I.C.G.H.G.
806.2100.0260.3At5g45310834567unknown proteinF:unknown;P:unknown;C:endomembrane system;OMVBFPAO.I.C.G.H.G.
774.7100.0125.4At4g02690828203glutamate bindingF:glutamate binding;P:unknown;C:unknown;BOMPFVO.I.C.G.H.G.
772.1100.0295.6At1g72100843541late embryogenesis abundant domain-containing protein / LEA domain-containing proteinF:unknown;P:embryonic development ending in seed dormancy;C:endomembrane system;BPOMFAVO.I.C.G.H.G.
678.7100.0287.1At3g22500821821ATECP31late embryogenesis abundant (LEA) proteinO.I.C.G.H.G.
676.8100.0220.0At1g70840843421MLP31 (MLP-LIKE PROTEIN 31)F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;PO.I.C.G.H.G.
538.3100.0143.0At1g23070838915unknown proteinF:unknown;P:biological_process unknown;C:unknown;MPFOO.I.C.G.H.G.
513.1100.0244.5At1g15330838102CBS domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOBAO.I.C.G.H.G.
512.3100.0292.1At5g07200830611YAP169encodes a gibberellin 20-oxidase.O.I.C.G.H.G.
507.6100.0310.4At1g14930838058major latex protein-related / MLP-relatedF:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;PO.I.C.G.H.G.
468.3100.0150.2At5g42290834234transcription activator-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
457.7100.0291.5At2g28420817390lactoylglutathione lyase family protein / glyoxalase I family proteinF:lactoylglutathione lyase activity;P:carbohydrate metabolic process;C:cellular_component unknown;BOPMFAO.I.C.G.H.G.
457.0100.0304.3At4g10020826593AtHSD5 (hydroxysteroid dehydrogenase 5)F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endomembrane system;BOMFPAVO.I.C.G.H.G.
455.4100.0151.0At3g24650822061ABI3 (ABA INSENSITIVE 3)Homologous to the maize transcription factor Viviparous-1. Full length ABI3 protein binds to the highly conserved RY motif [DNA motif CATGCA(TG)], present in many seed-specific promoters, and the B3 domains of this transcription factor is necessary for the specific interaction with the RY element. Transcriptional activity of ABI3 requires the B3 DNA-binding domain and an activation domain. In addition to the known N-terminal-located activation domain, a second transcription activation domain was found in the B1 region of ABI3. ABI3 is essential for seed maturation. Regulator of the transition between embryo maturation and early seedling development. Putative seed-specific transcriptional activator. Mutants exhibit decreased responsiveness to ABA suggesting that ABI3 protein participates in the ABA perception/transduction cascade. Based on double mutant analyses, ABI3 interacts genetically with both FUS3 and LEC1 and is involved in controlling accumulation of chlorophyll and anthocyanins, sensitivity to abscisic acid, and expression of the members of the 12S storage protein gene family. In addition, both FUS3 and LEC1 regulate positively the abundance of the ABI3 protein in the seed.O.I.C.G.H.G.
454.2100.0298.6At1g03790839408SOM (SOMNUS)Encodes SOMNUS (SOM), a nucleus-localized CCCH-type zinc finger protein. SOM negatively regulates light-dependent seed germination downstream of PIL5 (AT2G20180).O.I.C.G.H.G.
444.9100.0165.1At4g25580828663stress-responsive protein-relatedF:unknown;P:unknown;C:cellular_component unknown;PMOFBVO.I.C.G.H.G.
432.8100.0295.9At4g09600826545GASA3 (GAST1 PROTEIN HOMOLOG 3)One of GASA gene family which is related to a GA-stimulated transcript (GAST) from tomato.O.I.C.G.H.G.
432.2100.0158.5At2g38465818428unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PO.I.C.G.H.G.
412.6100.048.1At5g05550830438transcription factorF:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PMOO.I.C.G.H.G.
407.6100.0358.9At5g22470832308NAD+ ADP-ribosyltransferaseF:NAD+ ADP-ribosyltransferase activity;P:protein amino acid ADP-ribosylation;C:intracellular, nucleus;MOPFBVO.I.C.G.H.G.
400.6100.0113.0At5g25180832589CYP71B14putative cytochrome P450O.I.C.G.H.G.
395.9100.0411.7At3g51810824344EM1 (LATE EMBRYOGENESIS ABUNDANT 1)Encodes a ABA-inducible protein that accumulates during seed maturation, in parallel with its corresponding mRNA but with a 3 d delay. During germination, AtEm1 protein undergoes two successive cleavages before being degraded. Both proteins are more stable than the corresponding mRNA. The gene can be activated by the basic leucine zipper transcription factor ABI5. Expressed predominantly in provascular tissues with the strongest expression in the root tip.O.I.C.G.H.G.
374.7100.0328.4At3g53040824470late embryogenesis abundant protein, putative / LEA protein, putativeF:unknown;P:embryonic development ending in seed dormancy;C:unknown;MBOFPAVO.I.C.G.H.G.
374.7100.0306.1At3g58450825014universal stress protein (USP) family proteinF:molecular_function unknown;P:response to stress;C:cellular_component unknown;BPAOFMO.I.C.G.H.G.
357.5100.0305.5At1g65090842817unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVO.I.C.G.H.G.
342.7100.0145.8At3g48580824018xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putativeF:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, apoplast, cell wall;PBFOAO.I.C.G.H.G.
340.7100.069.6At3g03620821204MATE efflux family proteinF:drug transporter activity, antiporter activity, transporter activity;P:multidrug transport;C:membrane;BPOFMAO.I.C.G.H.G.
330.9100.0118.3At3g22490821820late embryogenesis abundant protein, putative / LEA protein, putativeF:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;PBMVAOO.I.C.G.H.G.
307.7100.056.2At5g16460831507-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOO.I.C.G.H.G.
297.2100.0361.4At5g01670831701aldose reductase, putativeF:oxidoreductase activity;P:oxidation reduction;C:unknown;BMOFPAO.I.C.G.H.G.
293.8100.043.0At3g14880820717-F:molecular_function unknown;P:biological_process unknown;C:unknown;PMO.I.C.G.H.G.
293.3100.063.2At5g57790835888unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
283.0100.0206.0At2g19900816509ATNADP-ME1 (NADP-malic enzyme 1)The malic enzyme (EC 1.1.1.40) encoded by AtNADP-ME1 is expressed in response to developmental and cell-specific signals.O.I.C.G.H.G.
282.0100.0385.1At2g21820816718unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
282.0100.0105.7At5g03560831789nucleobase:cation symporterF:nucleobase:cation symporter activity;P:biological_process unknown;C:cellular_component unknown;BMFPOO.I.C.G.H.G.
279.6100.0222.0At1g64110842716AAA-type ATPase family proteinF:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:endomembrane system;BOMFPAVO.I.C.G.H.G.
275.5100.055.1At5g54000835483oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;POBFMO.I.C.G.H.G.
269.3100.068.9At2g19930816512RNA-dependent RNA polymerase family proteinF:RNA-directed RNA polymerase activity;P:posttranscriptional gene silencing;C:cellular_component unknown;FPMOO.I.C.G.H.G.
265.6100.0367.5At5g07330830624unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PO.I.C.G.H.G.
262.7100.0297.0At4g03200828041catalyticF:catalytic activity;P:unknown;C:chloroplast;OBMAFPO.I.C.G.H.G.
260.4100.0243.3At1g27990839692unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
246.2100.077.4At5g65550836681UDP-glucoronosyl/UDP-glucosyl transferase family proteinF:transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBVOFO.I.C.G.H.G.
241.8100.077.2At3g16120820857dynein light chain, putativeF:microtubule motor activity;P:microtubule-based process;C:microtubule associated complex;MOPFO.I.C.G.H.G.
240.2100.071.6At5g04000830279unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
226.7100.0152.2At5g27730832835unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBMPO.I.C.G.H.G.
224.4100.096.5At5g18450831963AP2 domain-containing transcription factor, putativeencodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought.O.I.C.G.H.G.
221.6100.0141.3At2g35820818155unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOO.I.C.G.H.G.
217.4100.059.8At1g03470839494kinase interacting family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBAVO.I.C.G.H.G.
210.6100.0119.3At5g47810834832PFK2 (PHOSPHOFRUCTOKINASE 2)F:6-phosphofructokinase activity;P:glycolysis;C:cytosol, 6-phosphofructokinase complex;BOMFPAVO.I.C.G.H.G.
210.5100.0112.1At5g05320830414monooxygenase, putative (MO3)F:monooxygenase activity;P:metabolic process;C:cellular_component unknown;BFOPAMO.I.C.G.H.G.
207.0100.0104.9At5g14180831268MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1)F:catalytic activity;P:glycerol biosynthetic process, lipid metabolic process;C:endomembrane system;MFPBOO.I.C.G.H.G.
204.6100.0311.3At5g01300830983phosphatidylethanolamine-binding family proteinF:phosphatidylethanolamine binding;P:biological_process unknown;C:cellular_component unknown;BOAPFO.I.C.G.H.G.
201.2100.090.0At5g43770834399proline-rich family proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;MBPOFVAO.I.C.G.H.G.
200.3100.0118.0At2g23640816896reticulon family protein (RTNLB13)F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;MPOO.I.C.G.H.G.
197.8100.0295.0At3g50980824262XERO1 (DEHYDRIN XERO 1)F:molecular_function unknown;P:response to water, response to stress;C:cellular_component unknown;PMO.I.C.G.H.G.
193.0100.0269.9At3g21370821691BGLU19 (BETA GLUCOSIDASE 19)F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFAO.I.C.G.H.G.
186.7100.076.3At1g48660841288auxin-responsive GH3 family proteinF:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;OPBMFO.I.C.G.H.G.
185.0100.0246.4At4g21020827849late embryogenesis abundant domain-containing protein / LEA domain-containing proteinF:unknown;P:embryonic development ending in seed dormancy;C:unknown;OMBPFVAO.I.C.G.H.G.
182.0100.0159.6At5g55240835617caleosin-related family protein / embryo-specific protein, putativeF:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;PFOO.I.C.G.H.G.
181.4100.087.9At1g60200842315splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing proteinF:nucleotide binding, nucleic acid binding;P:mRNA processing;C:chloroplast;MOFBPVAO.I.C.G.H.G.
178.6100.0113.0At1g16730838244unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
178.3100.026.0At1g12130837765flavin-containing monooxygenase family protein / FMO family proteinF:NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity;P:unknown;C:unknown;BOMFPAO.I.C.G.H.G.
178.2100.0344.4At5g45690834608unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPFO.I.C.G.H.G.
175.9100.065.1At5g66110836743metal ion bindingF:metal ion binding;P:metal ion transport;C:plasma membrane;PFMO.I.C.G.H.G.
175.3100.0236.9At3g19920821530unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO.I.C.G.H.G.
174.4100.068.1At4g01970828186AtSTS (Arabidopsis thaliana stachyose synthase)Encodes a putative stachyose synthetase.O.I.C.G.H.G.
172.6100.0119.1At5g607608361972-phosphoglycerate kinase-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPBAFVO.I.C.G.H.G.
172.5100.0271.8At2g18050816317HIS1-3 (HISTONE H1-3)encodes a structurally divergent linker histone whose gene expression is induced by dehydration and ABA.O.I.C.G.H.G.
172.1100.033.6At5g64210836542AOX2encodes an isoform of alternative oxidase, which is expressed in rosettes, stems, and roots. Transcript accumulates in dry seeds and decreased upon germination and is not affected by actinomycin A. Protein is localized to mitochondria.O.I.C.G.H.G.
171.2100.0203.7At1g67100843030LBD40 (LOB DOMAIN-CONTAINING PROTEIN 40)F:unknown;P:response to gibberellin stimulus;C:unknown;PO.I.C.G.H.G.
170.5100.0323.8At2g40170818608GEA6 (LATE EMBRYOGENESIS ABUNDANT 6)Encodes a group 1 LEA gene that is activated by direct binding of ABI5 to its promoter and is involved in response to ABA. Is required for normal seed development. Involved in regulating the timing of dessication tolerance and rate of water loss during seed maturation.O.I.C.G.H.G.
170.0100.0143.0At4g16780827384ATHB-2 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2)Encodes a homeodomain-leucine zipper protein that is rapidly and strongly induced by changes in the ratio of red to far-red light. It is also involved in cell expansion and cell proliferation and in the response to auxin.O.I.C.G.H.G.
169.9100.0125.5At4g24150828515AtGRF8 (GROWTH-REGULATING FACTOR 8)Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in shoot and flower.O.I.C.G.H.G.
167.4100.0305.6At3g05260819690short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAVO.I.C.G.H.G.
159.099.991.7At2g36270818199ABI5 (ABA INSENSITIVE 5)Encodes a member of the basic leucine zipper transcription factor family, involved in ABA signalling during seed maturation and germination. The Arabidopsis abscisic acid (ABA)-insensitive abi5 mutants have pleiotropic defects in ABA response, including decreased sensitivity to ABA inhibition of germination and altered expression of some ABA-regulated genes. Comparison of seed and ABA-inducible vegetative gene expression in wild-type and abi5-1 plants indicates that ABI5 regulates a subset of late embryogenesis-abundant genes during both developmental stages.O.I.C.G.H.G.
157.199.969.2At1g24735839082O-methyltransferaseF:O-methyltransferase activity;P:unknown;C:cytosol;BOPMFAO.I.C.G.H.G.
156.499.9169.4At1g02700839492unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PMFOO.I.C.G.H.G.
153.399.966.4At3g54510824616early-responsive to dehydration protein-related / ERD protein-relatedF:unknown;P:unknown;C:endomembrane system, membrane;FPMOO.I.C.G.H.G.
147.899.9272.2At2g41280818727M10Encodes a hydrophilic protein similar to Late Embryogenesis Activated (LEA) proteins expressed during embryogenesis, which are thought to be involved in the acquisition of dessication tolerance.O.I.C.G.H.G.
145.799.9128.1At1g07500837264unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
144.799.9140.8At5g44310834454late embryogenesis abundant domain-containing protein / LEA domain-containing proteinF:unknown;P:embryonic development ending in seed dormancy;C:unknown;OMBFPAVO.I.C.G.H.G.
144.599.9240.3At1g50290841451unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:cytosol;PO.I.C.G.H.G.
141.099.959.5At4g38440830001-F:unknown;P:unknown;C:chloroplast;MFPOBO.I.C.G.H.G.
138.999.999.1At5g55750835669hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBVAO.I.C.G.H.G.
138.299.989.4At2g43500818951RWP-RK domain-containing proteinF:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PBOMFO.I.C.G.H.G.
137.999.9255.7At3g56350824802superoxide dismutase (Mn), putative / manganese superoxide dismutase, putativeF:superoxide dismutase activity, metal ion binding;P:superoxide metabolic process, removal of superoxide radicals;C:mitochondrion, endomembrane system;BOFMPAVO.I.C.G.H.G.
136.599.9119.7At4g31430829270unknown proteinF:unknown;P:unknown;C:plasma membrane;OMPFBVO.I.C.G.H.G.
132.999.9143.7At4g09610826546GASA2 (GAST1 PROTEIN HOMOLOG 2)F:molecular_function unknown;P:response to gibberellin stimulus;C:endomembrane system;PO.I.C.G.H.G.
132.899.9114.0At1g13640837925phosphatidylinositol 3- and 4-kinase family proteinF:inositol or phosphatidylinositol kinase activity, phosphotransferase activity, alcohol group as acceptor;P:unknown;C:cellular_component unknown;MPOFBO.I.C.G.H.G.
132.399.9274.2At2g15010815990thionin, putativePredicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.O.I.C.G.H.G.
131.599.978.7At2g42950818896unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOO.I.C.G.H.G.
129.399.949.2At3g26800822294unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
128.799.991.6At2g41070818706EEL (ENHANCED EM LEVEL)Transcription factor homologous to ABI5. Regulates AtEm1 expression by binding directly at the AtEm1 promoter. Located in the nucleus and expressed during seed maturation in the cotyledons and later in the whole embryo.O.I.C.G.H.G.
128.799.978.6At2g39580818543unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMPOFO.I.C.G.H.G.
124.399.9112.7At5g49990835063xanthine/uracil permease family proteinF:transmembrane transporter activity;P:transport;C:membrane;BOMPFAVO.I.C.G.H.G.
123.699.963.9At1g31480840038SGR2 (SHOOT GRAVITROPISM 2)encodes a novel protein that may be part of a gene family represented by bovine phosphatidic acid-preferring phospholipase A1 (PA-PLA1)containing a putative transmembrane domain. SGR2 is involved in the formation and function of the vacuole.O.I.C.G.H.G.



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