CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM133078

Assay name JD AT+EO COL WT 06H UNINFECTED

GSE experiment GSE5686: AtGenExpress: Pathogen Series: Response to Erysiphe orontii infection

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
22.9 99.6 59.4 At3g26960 822314 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
19.5 99.6 1.8 At2g05450 3768432 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
16.7 99.5 93.6 At4g12310 826840 CYP706A5 member of CYP706A O.I. C.G. H.G.
14.5 99.4 7.7 At2g17470 816253 unknown protein F:unknown;P:biological_process unknown;C:unknown;BPOF O.I. C.G. H.G.
14.0 99.4 10.9 At2g40720 818667 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:unknown;C:cellular_component unknown;POMFB O.I. C.G. H.G.
13.7 99.4 23.2 At1g69523 843286 UbiE/COQ5 methyltransferase family protein F:methyltransferase activity;P:metabolic process;C:chloroplast;BOFAMP O.I. C.G. H.G.
13.5 99.4 37.9 At1g13650 837926 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVA O.I. C.G. H.G.
12.0 99.3 3.1 At3g42540 823263 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
11.9 99.3 225.0 At1g73600 843694 methyltransferase/ phosphoethanolamine N-methyltransferase F:methyltransferase activity, phosphoethanolamine N-methyltransferase activity;P:metabolic process;C:unknown;BOFAPMV O.I. C.G. H.G.
11.0 99.2 3.8 At1g66490 842967 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
10.9 99.2 55.2 At5g45820 834622 CIPK20 (CBL-INTERACTING PROTEIN KINASE 20) Encodes a CBL-interacting serine/threonine protein kinase comprised of an N-terminal kinase catalytic domain similar to SNF1/AMPK and a unique C-terminal regulatory domain. O.I. C.G. H.G.
10.8 99.2 9.0 At1g77960 844131 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBV O.I. C.G. H.G.
10.7 99.2 12.6 At3g17640 821031 leucine-rich repeat family protein F:protein binding;P:signal transduction;C:unknown;PMOBFA O.I. C.G. H.G.
10.5 99.2 43.3 At1g18360 838417 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:chloroplast;BOPMFVA O.I. C.G. H.G.
10.3 99.2 40.5 At4g23290 828428 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:mitochondrion;MPOBFVA O.I. C.G. H.G.
10.1 99.2 20.8 At5g02180 831862 amino acid transporter family protein F:amino acid transmembrane transporter activity;P:amino acid transport;C:chloroplast, membrane;MPFOBAV O.I. C.G. H.G.
9.9 99.1 40.3 At1g23080 838916 PIN7 (PIN-FORMED 7) Encodes a novel component of auxin efflux that is located apically in the basal cell and is involved during embryogenesis in setting up the apical-basal axis in the embryo. It is also involved in pattern specification during root development. In roots, it is expressed at lateral and basal membranes of provascular cells in the meristem and elongation zone, whereas in the columella cells it coincides with the PIN3 domain. Plasma membrane-localized PIN proteins mediate a saturable efflux of auxin. PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. The action of PINs in auxin efflux is distinct from PGPs, rate-limiting, specific to auxins and sensitive to auxin transport inhibitors. PINs are directly involved of in catalyzing cellular auxin efflux. O.I. C.G. H.G.
9.9 99.1 33.3 At1g54820 841921 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVA O.I. C.G. H.G.
9.8 99.1 3.0 At3g28190 822445 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system O.I. C.G. H.G.
9.5 99.1 78.3 At5g63180 836439 pectate lyase family protein F:lyase activity, pectate lyase activity;P:biological_process unknown;C:unknown;BPFO O.I. C.G. H.G.
9.5 99.1 5.3 At2g37800 818357 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMOF O.I. C.G. H.G.
9.1 99.1 34.6 At1g14230 837984 nucleoside phosphatase family protein / GDA1/CD39 family protein F:hydrolase activity;P:unknown;C:unknown;MFPOB O.I. C.G. H.G.
9.1 99.1 30.6 At3g15570 820797 phototropic-responsive NPH3 family protein F:signal transducer activity;P:response to light stimulus;C:cellular_component unknown;P O.I. C.G. H.G.
9.0 99.1 20.4 At5g44530 834480 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BOPFAM O.I. C.G. H.G.
8.8 99.0 89.0 At1g70820 843419 phosphoglucomutase, putative / glucose phosphomutase, putative F:intramolecular transferase activity, phosphotransferases;P:carbohydrate metabolic process;C:chloroplast;BOAMPF O.I. C.G. H.G.
8.8 99.0 27.2 At5g01790 831868 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
8.8 99.0 9.1 At4g29610 829082 cytidine deaminase, putative / cytidine aminohydrolase, putative F:hydrolase activity, cytidine deaminase activity, zinc ion binding, catalytic activity;P:cytidine deamination, cytidine metabolic process;C:cellular_component unknown;BOMPFA O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
22.9	99.6	59.4	At3g26960	822314	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
19.5	99.6	1.8	At2g05450	3768432	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
16.7	99.5	93.6	At4g12310	826840	CYP706A5	member of CYP706A	O.I.	C.G.	H.G.
14.5	99.4	7.7	At2g17470	816253	unknown protein	F:unknown;P:biological_process unknown;C:unknown;BPOF	O.I.	C.G.	H.G.
14.0	99.4	10.9	At2g40720	818667	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:unknown;C:cellular_component unknown;POMFB	O.I.	C.G.	H.G.
13.7	99.4	23.2	At1g69523	843286	UbiE/COQ5 methyltransferase family protein	F:methyltransferase activity;P:metabolic process;C:chloroplast;BOFAMP	O.I.	C.G.	H.G.
13.5	99.4	37.9	At1g13650	837926	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVA	O.I.	C.G.	H.G.
12.0	99.3	3.1	At3g42540	823263	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
11.9	99.3	225.0	At1g73600	843694	methyltransferase/ phosphoethanolamine N-methyltransferase	F:methyltransferase activity, phosphoethanolamine N-methyltransferase activity;P:metabolic process;C:unknown;BOFAPMV	O.I.	C.G.	H.G.
11.0	99.2	3.8	At1g66490	842967	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
10.9	99.2	55.2	At5g45820	834622	CIPK20 (CBL-INTERACTING PROTEIN KINASE 20)	Encodes a CBL-interacting serine/threonine protein kinase comprised of an N-terminal kinase catalytic domain similar to SNF1/AMPK and a unique C-terminal regulatory domain.	O.I.	C.G.	H.G.
10.8	99.2	9.0	At1g77960	844131	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBV	O.I.	C.G.	H.G.
10.7	99.2	12.6	At3g17640	821031	leucine-rich repeat family protein	F:protein binding;P:signal transduction;C:unknown;PMOBFA	O.I.	C.G.	H.G.
10.5	99.2	43.3	At1g18360	838417	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:unknown;C:chloroplast;BOPMFVA	O.I.	C.G.	H.G.
10.3	99.2	40.5	At4g23290	828428	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:mitochondrion;MPOBFVA	O.I.	C.G.	H.G.
10.1	99.2	20.8	At5g02180	831862	amino acid transporter family protein	F:amino acid transmembrane transporter activity;P:amino acid transport;C:chloroplast, membrane;MPFOBAV	O.I.	C.G.	H.G.
9.9	99.1	40.3	At1g23080	838916	PIN7 (PIN-FORMED 7)	Encodes a novel component of auxin efflux that is located apically in the basal cell and is involved during embryogenesis in setting up the apical-basal axis in the embryo. It is also involved in pattern specification during root development. In roots, it is expressed at lateral and basal membranes of provascular cells in the meristem and elongation zone, whereas in the columella cells it coincides with the PIN3 domain. Plasma membrane-localized PIN proteins mediate a saturable efflux of auxin. PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. The action of PINs in auxin efflux is distinct from PGPs, rate-limiting, specific to auxins and sensitive to auxin transport inhibitors. PINs are directly involved of in catalyzing cellular auxin efflux.	O.I.	C.G.	H.G.
9.9	99.1	33.3	At1g54820	841921	protein kinase family protein	F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVA	O.I.	C.G.	H.G.
9.8	99.1	3.0	At3g28190	822445	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system	O.I.	C.G.	H.G.
9.5	99.1	78.3	At5g63180	836439	pectate lyase family protein	F:lyase activity, pectate lyase activity;P:biological_process unknown;C:unknown;BPFO	O.I.	C.G.	H.G.
9.5	99.1	5.3	At2g37800	818357	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMOF	O.I.	C.G.	H.G.
9.1	99.1	34.6	At1g14230	837984	nucleoside phosphatase family protein / GDA1/CD39 family protein	F:hydrolase activity;P:unknown;C:unknown;MFPOB	O.I.	C.G.	H.G.
9.1	99.1	30.6	At3g15570	820797	phototropic-responsive NPH3 family protein	F:signal transducer activity;P:response to light stimulus;C:cellular_component unknown;P	O.I.	C.G.	H.G.
9.0	99.1	20.4	At5g44530	834480	subtilase family protein	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BOPFAM	O.I.	C.G.	H.G.
8.8	99.0	89.0	At1g70820	843419	phosphoglucomutase, putative / glucose phosphomutase, putative	F:intramolecular transferase activity, phosphotransferases;P:carbohydrate metabolic process;C:chloroplast;BOAMPF	O.I.	C.G.	H.G.
8.8	99.0	27.2	At5g01790	831868	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
8.8	99.0	9.1	At4g29610	829082	cytidine deaminase, putative / cytidine aminohydrolase, putative	F:hydrolase activity, cytidine deaminase activity, zinc ion binding, catalytic activity;P:cytidine deamination, cytidine metabolic process;C:cellular_component unknown;BOMPFA	O.I.	C.G.	H.G.

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GSM ID	GSM133078
Assay name	JD AT+EO COL WT 06H UNINFECTED
GSE experiment	GSE5686: AtGenExpress: Pathogen Series: Response to Erysiphe orontii infection

Microarray experiments to specifically-expressed genes

GSM ID GSM133078 Assay name JD AT+EO COL WT 06H UNINFECTED GSE experiment GSE5686: AtGenExpress: Pathogen Series: Response to Erysiphe orontii infection

GSM ID GSM133078

Assay name JD AT+EO COL WT 06H UNINFECTED

GSE experiment GSE5686: AtGenExpress: Pathogen Series: Response to Erysiphe orontii infection