CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM133068

Assay name 2530

GSE experiment GSE5685: AtGenExpress: Pathogen Series: Pseudomonas half leaf injection

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
48.9 99.8 85.4 At5g47330 834780 palmitoyl protein thioesterase family protein F:palmitoyl-(protein) hydrolase activity;P:response to salt stress;C:endomembrane system;MPFO O.I. C.G. H.G.
47.2 99.8 152.9 At1g30250 839905 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
35.4 99.7 39.3 At2g36590 818232 ProT3 (PROLINE TRANSPORTER 3) Encodes a proline transporter with affinity for gly betaine, proline, and GABA. Protein is expressed in leaves, flowers and siliques but to a much lesser extent in roots. O.I. C.G. H.G.
31.9 99.7 86.9 At1g36280 840534 adenylosuccinate lyase, putative / adenylosuccinase, putative F:N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity, catalytic activity;P:purine ribonucleotide biosynthetic process, purine base biosynthetic process, IMP biosynthetic process;C:chloroplast;BOMFAP O.I. C.G. H.G.
28.7 99.7 45.0 At4g32800 829416 AP2 domain-containing transcription factor TINY, putative encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. O.I. C.G. H.G.
28.5 99.7 128.1 At1g74930 843832 ORA47 encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. O.I. C.G. H.G.
26.2 99.7 68.4 At4g17470 827458 palmitoyl protein thioesterase family protein F:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFO O.I. C.G. H.G.
24.8 99.6 15.3 At4g13410 826972 ATCSLA15 encodes a gene similar to cellulose synthase O.I. C.G. H.G.
23.7 99.6 417.8 At4g23600 828460 CORI3 (CORONATINE INDUCED 1) Encodes cystine lyase which is expected to be involved in amino acid metabolism, providing the plant with cysteine and the generation of precursors of ethylene biosynthesis. mRNA levels are elevated in response to wounding. O.I. C.G. H.G.
22.0 99.6 69.5 At2g16630 816164 proline-rich family protein F:unknown;P:unknown;C:endomembrane system;MPBOFVA O.I. C.G. H.G.
20.5 99.6 164.3 At5g23240 832388 DNAJ heat shock N-terminal domain-containing protein F:unfolded protein binding, heat shock protein binding;P:protein folding;C:chloroplast;BOMPFAV O.I. C.G. H.G.
20.5 99.6 59.9 At4g13340 826964 leucine-rich repeat family protein / extensin family protein F:structural constituent of cell wall, protein binding;P:unknown;C:cell wall, plant-type cell wall;MBPOFVA O.I. C.G. H.G.
20.0 99.6 123.2 At3g02570 820656 MEE31 (MATERNAL EFFECT EMBRYO ARREST 31) Encodes a protein with phosphomannose isomerase activity. O.I. C.G. H.G.
19.3 99.6 85.5 At1g73540 843688 atnudt21 (Arabidopsis thaliana Nudix hydrolase homolog 21) F:hydrolase activity;P:biological_process unknown;C:chloroplast;BMPOFA O.I. C.G. H.G.
18.9 99.5 77.0 At3g54810 824646 zinc finger (GATA type) family protein Encodes a protein containing a GATA type zinc finger domain that is expressed in the embryo axis and involved in germination. Mutants have a reduced rate of germination even when stratified. O.I. C.G. H.G.
18.9 99.5 30.8 At4g27657 828879 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
17.7 99.5 44.3 At5g50915 835164 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:response to gibberellin stimulus;C:nucleus;PFM O.I. C.G. H.G.
17.7 99.5 29.0 At2g23130 816845 AGP17 (ARABINOGALACTAN PROTEIN 17) AGP17 is a lysine-rich arabinogalactan-protein (AGP) and part of a multi-gene family of glycoproteins with approx. 50 members. It falls into one subclass with AGP18 and AGP19, other lysine-rich AGPs. 84% of its proline residues are hydroxylated to hydroproline and its heavy glycosylation accounts for appr. 69% of the molecular weight. The main glycosyl residues are arabinose (30.1%) and galactose (55.1%). Glycosyl linkages are consistent with type II arabinogalactans. AGP17 is predicted to have a glycosylphosphatidylinositol (GPI)anchor and is localized to the plasma membrane and Hechtian strands. It is expressed in young/old leaves, shoots, suspension cultures and flowers. O.I. C.G. H.G.
17.0 99.5 59.2 At3g43270 823402 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:plant-type cell wall;PBFM O.I. C.G. H.G.
16.5 99.5 102.0 At4g27652 828877 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
16.3 99.5 145.5 At4g08870 826458 arginase, putative Encodes one of the two arginase in the genome. Gene expression is enhanced by methyl jasmonate treatment. O.I. C.G. H.G.
16.1 99.5 60.9 At4g27654 828878 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
16.1 99.5 58.6 At2g20340 816553 tyrosine decarboxylase, putative F:pyridoxal phosphate binding, carboxy-lyase activity, catalytic activity, tyrosine decarboxylase activity;P:amino acid metabolic process, response to wounding;C:cellular_component unknown;MBOFPAV O.I. C.G. H.G.
16.0 99.5 13.3 At2g30830 817634 2-oxoglutarate-dependent dioxygenase, putative encodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenase O.I. C.G. H.G.
15.9 99.5 161.9 At1g29395 839815 COR414-TM1 encodes a protein similar to the cold acclimation protein WCOR413 in wheat. Expression is induced by short-term cold-treatment, water deprivation, and abscisic acid treatment. Possibly targeted to thylakoid membrane. O.I. C.G. H.G.
15.9 99.5 161.9 At5g67480 836884 BT4 (BTB AND TAZ DOMAIN PROTEIN 4) BTB and TAZ domain protein. Located in cytoplasm and expressed in fruit, flower and leaves. O.I. C.G. H.G.
15.6 99.5 34.6 At4g16563 827356 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:plant-type cell wall;PMFO O.I. C.G. H.G.
15.4 99.5 115.1 At5g06870 830578 PGIP2 (POLYGALACTURONASE INHIBITING PROTEIN 2) Encodes a polygalacturonase inhibiting protein involved in plant defense response. PGIPs inhibit the activity of pectin degrading enzymes such as those produced by fungal pathogens. PGIP2 is induced by fungal infection and methyl jasmonate. O.I. C.G. H.G.
15.3 99.4 249.4 At1g66100 842924 thionin, putative Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660. O.I. C.G. H.G.
14.5 99.4 112.5 At3g48520 824011 CYP94B3 member of CYP94B O.I. C.G. H.G.
14.5 99.4 33.0 At3g19850 821522 phototropic-responsive NPH3 family protein F:protein binding, signal transducer activity;P:response to light stimulus;C:endomembrane system;P O.I. C.G. H.G.
13.6 99.4 95.8 At4g01080 827902 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;PF O.I. C.G. H.G.
13.4 99.4 32.8 At5g07240 830615 IQD24 (IQ-domain 24) F:calmodulin binding;P:biological_process unknown;C:unknown;PMOB O.I. C.G. H.G.
13.2 99.4 190.8 At2g33380 817901 RD20 (RESPONSIVE TO DESSICATION 20) Encodes a calcium binding protein whose mRNA is induced upon treatment with NaCl, ABA and in response to dessication. mRNA expression under drought conditions is apparent particularly in leaves and flowers. O.I. C.G. H.G.
13.0 99.4 87.7 At5g65630 836689 GTE7 (Global transcription factor group E 7) This gene is predicted to encode a bromodomain-containing protein. Plant lines expressing RNAi constructs targeted against GTE7 show some resistance to agrobacterium-mediated root transformation. O.I. C.G. H.G.
12.9 99.3 125.8 At1g68520 843181 zinc finger (B-box type) family protein F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;POMF O.I. C.G. H.G.
12.6 99.3 100.9 At3g51450 824308 strictosidine synthase family protein F:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endomembrane system;BPMOAF O.I. C.G. H.G.
12.6 99.3 85.5 At5g07010 830592 ST2A (SULFOTRANSFERASE 2A) Encodes a sulfotransferase that acts specifically on 11- and 12-hydroxyjasmonic acid. Transcript levels for this enzyme are increased by treatments with jasmonic acid (JA), 12-hydroxyJA, JA-isoleucine, and 12-oxyphytodienoic acid (a JA precursor). O.I. C.G. H.G.
12.5 99.3 209.8 At5g42650 834273 AOS (ALLENE OXIDE SYNTHASE) Encodes a member of the cytochrome p450 CYP74 gene family that functions as an allene oxide synthase. This enzyme catalyzes dehydration of the hydroperoxide to an unstable allene oxide in the JA biosynthetic pathway. It shows a dual catalytic activity, the major one being a 13-AOS but also expressing a 9-AOS activity. O.I. C.G. H.G.
12.5 99.3 63.1 At1g68600 843190 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;BPFO O.I. C.G. H.G.
12.3 99.3 55.6 At3g27960 822420 kinesin light chain-related F:binding;P:biological_process unknown;C:plasma membrane;MBOFPAV O.I. C.G. H.G.
11.7 99.3 118.1 At3g14067 820621 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast, plasma membrane, vacuole, plant-type cell wall;BPOFAM O.I. C.G. H.G.
11.6 99.3 188.3 At1g19670 838554 ATCLH1 (ARABIDOPSIS THALIANA CORONATINE-INDUCED PROTEIN 1) Chlorophyllase is the first enzyme involved in chlorophyll degradation. It catalyzes the hydrolysis of the ester bond to yield chlorophyllide and phytol. AtCLH1 lacks a typical signal sequence for the chloroplast. Its expression is induced rapidly by methyljasmonate, a known promoter of senescence and chlorophyll degradation. O.I. C.G. H.G.
11.6 99.3 58.5 At2g34810 818046 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:response to jasmonic acid stimulus, response to wounding;C:endomembrane system;FBPOAM O.I. C.G. H.G.
11.6 99.3 18.0 At2g03710 814898 SEP4 (SEPALLATA 4) This gene belongs to the family of SEP genes. It is involved in the development of sepals, petals, stamens and carpels. Additionally, it plays a central role in the determination of flower meristem and organ identity. O.I. C.G. H.G.
11.5 99.3 55.4 At1g63090 842612 AtPP2-A11 (Phloem protein 2-A11) F:carbohydrate binding;P:N-terminal protein myristoylation;C:cellular_component unknown;P O.I. C.G. H.G.
11.5 99.3 46.9 At5g11060 830973 KNAT4 (KNOTTED1-LIKE HOMEOBOX GENE 4) A member of Class II KN1-like homeodomain transcription factors (together with KNAT3 and KNAT5), with greatest homology to the maize knox1 homeobox protein. Expression regulated by light. Detected in all tissues examined, but most prominent in leaves and young siliques. Transient expression of GFP translational fusion protein suggests bipartite localization in nucleus and cytoplasm. KNAT4 promoter activity showed cell-type specific pattern along longitudinal root axis; GUS expression pattern started at the elongation zone, predominantly in the phloem and pericycle cells, extending to endodermis toward the base of the root. O.I. C.G. H.G.
11.4 99.3 57.4 At1g07720 837286 KCS3 (3-KETOACYL-COA SYNTHASE 3) Encodes KCS3, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). O.I. C.G. H.G.
11.4 99.3 32.7 At3g07650 819956 COL9 (CONSTANS-LIKE 9) This gene belongs to the CO (CONSTANS) gene family. This gene family is divided in three subgroups: groups III, to which COL9 belongs, is characterised by one B-box (supposed to regulate protein-protein interactions) and a second diverged zinc finger. COL9 downregulates expression of CO (CONSTANS) as well as FT and SOC1 which are known regulatory targets of CO. O.I. C.G. H.G.
11.1 99.2 53.3 At5g58670 835981 PLC1 (PHOSPHOLIPASE C 1) phosphatidylinositol-specific phospholipase C is induced to a significant extent under various environmental stresses, such as dehydration, salinity, and low temperature. May play a role in secondary ABA response. There are two genes called ATPLC1, one corresponding to AT4g38530 and one corresponding ot AT5g58670 (this one). O.I. C.G. H.G.
11.1 99.2 47.7 At2g34930 818058 disease resistance family protein F:protein binding;P:signal transduction, defense response to fungus, defense response;C:cell wall;PMOBFAV O.I. C.G. H.G.
10.6 99.2 128.8 At5g05600 830443 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, iron ion binding;P:response to salt stress;C:unknown;POBFM O.I. C.G. H.G.
10.6 99.2 89.1 At5g06530 830541 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:unknown;C:plasma membrane;BOMFAPV O.I. C.G. H.G.
10.5 99.2 70.9 At5g37770 833755 TCH2 (TOUCH 2) Encodes a protein with 40% similarity to calmodulin. Binds Ca(2+) and, as a consequence, undergoes conformational changes. CML24 expression occurs in all major organs, and transcript levels are increased from 2- to 15-fold in plants subjected to touch, darkness, heat, cold, hydrogen peroxide, abscisic acid (ABA), and indole-3-acetic acid. However, CML24 protein accumulation changes were not detectable. The putative CML24 regulatory region confers reporter expression at sites of predicted mechanical stress; in regions undergoing growth; in vascular tissues and various floral organs; and in stomata, trichomes, and hydathodes. CML24-underexpressing transgenics are resistant to ABA inhibition of germination and seedling growth, are defective in long-day induction of flowering, and have enhanced tolerance to CoCl(2), molybdic acid, ZnSO(4), and MgCl(2). O.I. C.G. H.G.
10.4 99.2 100.3 At4g15210 827185 BAM5 (BETA-AMYLASE 5) cytosolic beta-amylase expressed in rosette leaves and inducible by sugar. RAM1 mutants have reduced beta amylase in leaves and stems. O.I. C.G. H.G.
10.3 99.2 60.1 At2g38750 818457 ANNAT4 (ANNEXIN ARABIDOPSIS 4) Annexins are a family of calcium dependent membrane binding proteins though to be involved in Golgi mediated secretion. This is one of four annexins identified in Arabidopsis. O.I. C.G. H.G.
10.2 99.2 124.0 At1g69870 843323 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:response to salt stress, oligopeptide transport;C:plasma membrane, membrane;PBMFO O.I. C.G. H.G.
10.0 99.2 27.4 At1g70090 843345 LGT8 (GLUCOSYL TRANSFERASE FAMILY 8) Encodes a protein with putative galacturonosyltransferase activity. O.I. C.G. H.G.
9.9 99.1 106.3 At5g11070 830974 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
9.8 99.1 126.2 At3g28220 822448 meprin and TRAF homology domain-containing protein / MATH domain-containing protein F:molecular_function unknown;P:response to salt stress;C:vacuole, chloroplast envelope;PMO O.I. C.G. H.G.
9.8 99.1 65.2 At2g43290 818931 MSS3 (multicopy suppressors of snf4 deficiency in yeast 3) Encodes calmodulin-like MSS3. O.I. C.G. H.G.
9.7 99.1 203.3 At2g42530 818853 COR15B (COLD REGULATED 15B) F:unknown;P:response to cold;C:chloroplast, chloroplast stroma, chloroplast envelope;PBOMF O.I. C.G. H.G.
9.7 99.1 66.5 At1g30260 839906 - F:molecular_function unknown;P:response to cytokinin stimulus;C:unknown;P O.I. C.G. H.G.
9.5 99.1 73.9 At3g44260 823551 CCR4-NOT transcription complex protein, putative F:ribonuclease activity, nucleic acid binding;P:response to biotic stimulus, response to wounding, RNA modification;C:nucleus;MPOF O.I. C.G. H.G.
9.4 99.1 19.6 At4g15660 827243 glutaredoxin family protein F:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFOB O.I. C.G. H.G.
9.3 99.1 76.7 At1g74450 843786 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
9.3 99.1 75.9 At1g15010 838066 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PB O.I. C.G. H.G.
9.2 99.1 198.1 At4g27520 828861 plastocyanin-like domain-containing protein F:electron carrier activity, copper ion binding;P:unknown;C:in 6 components;MOFBPVA O.I. C.G. H.G.
9.2 99.1 155.7 At2g06050 815160 OPR3 (OPDA-REDUCTASE 3) Encodes a 12-oxophytodienoate reductase that is required for jasmonate biosynthesis. Mutants are male sterile and defective in pollen dehiscence. O.I. C.G. H.G.
9.2 99.1 89.1 At5g23660 832431 MTN3 (Arabidopsis homolog of Medicago truncatula MTN3) homolog of the Medicago nodulin MTN3 O.I. C.G. H.G.
9.1 99.1 84.7 At1g72180 843550 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
9.1 99.1 58.3 At5g47640 834815 NF-YB2 (NUCLEAR FACTOR Y, SUBUNIT B2) F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus, intracellular;MPFO O.I. C.G. H.G.
9.0 99.1 51.8 At5g02940 831426 - F:unknown;P:unknown;C:chloroplast, chloroplast envelope;POB O.I. C.G. H.G.
8.9 99.0 29.3 At3g48720 824033 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO O.I. C.G. H.G.
8.8 99.0 177.7 At2g16660 816167 nodulin family protein F:unknown;P:unknown;C:endomembrane system;BOPFAM O.I. C.G. H.G.
8.8 99.0 65.7 At1g52720 841705 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
48.9	99.8	85.4	At5g47330	834780	palmitoyl protein thioesterase family protein	F:palmitoyl-(protein) hydrolase activity;P:response to salt stress;C:endomembrane system;MPFO	O.I.	C.G.	H.G.
47.2	99.8	152.9	At1g30250	839905	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
35.4	99.7	39.3	At2g36590	818232	ProT3 (PROLINE TRANSPORTER 3)	Encodes a proline transporter with affinity for gly betaine, proline, and GABA. Protein is expressed in leaves, flowers and siliques but to a much lesser extent in roots.	O.I.	C.G.	H.G.
31.9	99.7	86.9	At1g36280	840534	adenylosuccinate lyase, putative / adenylosuccinase, putative	F:N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity, catalytic activity;P:purine ribonucleotide biosynthetic process, purine base biosynthetic process, IMP biosynthetic process;C:chloroplast;BOMFAP	O.I.	C.G.	H.G.
28.7	99.7	45.0	At4g32800	829416	AP2 domain-containing transcription factor TINY, putative	encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.	O.I.	C.G.	H.G.
28.5	99.7	128.1	At1g74930	843832	ORA47	encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.	O.I.	C.G.	H.G.
26.2	99.7	68.4	At4g17470	827458	palmitoyl protein thioesterase family protein	F:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFO	O.I.	C.G.	H.G.
24.8	99.6	15.3	At4g13410	826972	ATCSLA15	encodes a gene similar to cellulose synthase	O.I.	C.G.	H.G.
23.7	99.6	417.8	At4g23600	828460	CORI3 (CORONATINE INDUCED 1)	Encodes cystine lyase which is expected to be involved in amino acid metabolism, providing the plant with cysteine and the generation of precursors of ethylene biosynthesis. mRNA levels are elevated in response to wounding.	O.I.	C.G.	H.G.
22.0	99.6	69.5	At2g16630	816164	proline-rich family protein	F:unknown;P:unknown;C:endomembrane system;MPBOFVA	O.I.	C.G.	H.G.
20.5	99.6	164.3	At5g23240	832388	DNAJ heat shock N-terminal domain-containing protein	F:unfolded protein binding, heat shock protein binding;P:protein folding;C:chloroplast;BOMPFAV	O.I.	C.G.	H.G.
20.5	99.6	59.9	At4g13340	826964	leucine-rich repeat family protein / extensin family protein	F:structural constituent of cell wall, protein binding;P:unknown;C:cell wall, plant-type cell wall;MBPOFVA	O.I.	C.G.	H.G.
20.0	99.6	123.2	At3g02570	820656	MEE31 (MATERNAL EFFECT EMBRYO ARREST 31)	Encodes a protein with phosphomannose isomerase activity.	O.I.	C.G.	H.G.
19.3	99.6	85.5	At1g73540	843688	atnudt21 (Arabidopsis thaliana Nudix hydrolase homolog 21)	F:hydrolase activity;P:biological_process unknown;C:chloroplast;BMPOFA	O.I.	C.G.	H.G.
18.9	99.5	77.0	At3g54810	824646	zinc finger (GATA type) family protein	Encodes a protein containing a GATA type zinc finger domain that is expressed in the embryo axis and involved in germination. Mutants have a reduced rate of germination even when stratified.	O.I.	C.G.	H.G.
18.9	99.5	30.8	At4g27657	828879	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
17.7	99.5	44.3	At5g50915	835164	basic helix-loop-helix (bHLH) family protein	F:transcription factor activity, DNA binding;P:response to gibberellin stimulus;C:nucleus;PFM	O.I.	C.G.	H.G.
17.7	99.5	29.0	At2g23130	816845	AGP17 (ARABINOGALACTAN PROTEIN 17)	AGP17 is a lysine-rich arabinogalactan-protein (AGP) and part of a multi-gene family of glycoproteins with approx. 50 members. It falls into one subclass with AGP18 and AGP19, other lysine-rich AGPs. 84% of its proline residues are hydroxylated to hydroproline and its heavy glycosylation accounts for appr. 69% of the molecular weight. The main glycosyl residues are arabinose (30.1%) and galactose (55.1%). Glycosyl linkages are consistent with type II arabinogalactans. AGP17 is predicted to have a glycosylphosphatidylinositol (GPI)anchor and is localized to the plasma membrane and Hechtian strands. It is expressed in young/old leaves, shoots, suspension cultures and flowers.	O.I.	C.G.	H.G.
17.0	99.5	59.2	At3g43270	823402	pectinesterase family protein	F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:plant-type cell wall;PBFM	O.I.	C.G.	H.G.
16.5	99.5	102.0	At4g27652	828877	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
16.3	99.5	145.5	At4g08870	826458	arginase, putative	Encodes one of the two arginase in the genome. Gene expression is enhanced by methyl jasmonate treatment.	O.I.	C.G.	H.G.
16.1	99.5	60.9	At4g27654	828878	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
16.1	99.5	58.6	At2g20340	816553	tyrosine decarboxylase, putative	F:pyridoxal phosphate binding, carboxy-lyase activity, catalytic activity, tyrosine decarboxylase activity;P:amino acid metabolic process, response to wounding;C:cellular_component unknown;MBOFPAV	O.I.	C.G.	H.G.
16.0	99.5	13.3	At2g30830	817634	2-oxoglutarate-dependent dioxygenase, putative	encodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenase	O.I.	C.G.	H.G.
15.9	99.5	161.9	At1g29395	839815	COR414-TM1	encodes a protein similar to the cold acclimation protein WCOR413 in wheat. Expression is induced by short-term cold-treatment, water deprivation, and abscisic acid treatment. Possibly targeted to thylakoid membrane.	O.I.	C.G.	H.G.
15.9	99.5	161.9	At5g67480	836884	BT4 (BTB AND TAZ DOMAIN PROTEIN 4)	BTB and TAZ domain protein. Located in cytoplasm and expressed in fruit, flower and leaves.	O.I.	C.G.	H.G.
15.6	99.5	34.6	At4g16563	827356	aspartyl protease family protein	F:aspartic-type endopeptidase activity;P:proteolysis;C:plant-type cell wall;PMFO	O.I.	C.G.	H.G.
15.4	99.5	115.1	At5g06870	830578	PGIP2 (POLYGALACTURONASE INHIBITING PROTEIN 2)	Encodes a polygalacturonase inhibiting protein involved in plant defense response. PGIPs inhibit the activity of pectin degrading enzymes such as those produced by fungal pathogens. PGIP2 is induced by fungal infection and methyl jasmonate.	O.I.	C.G.	H.G.
15.3	99.4	249.4	At1g66100	842924	thionin, putative	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.	O.I.	C.G.	H.G.
14.5	99.4	112.5	At3g48520	824011	CYP94B3	member of CYP94B	O.I.	C.G.	H.G.
14.5	99.4	33.0	At3g19850	821522	phototropic-responsive NPH3 family protein	F:protein binding, signal transducer activity;P:response to light stimulus;C:endomembrane system;P	O.I.	C.G.	H.G.
13.6	99.4	95.8	At4g01080	827902	unknown protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
13.4	99.4	32.8	At5g07240	830615	IQD24 (IQ-domain 24)	F:calmodulin binding;P:biological_process unknown;C:unknown;PMOB	O.I.	C.G.	H.G.
13.2	99.4	190.8	At2g33380	817901	RD20 (RESPONSIVE TO DESSICATION 20)	Encodes a calcium binding protein whose mRNA is induced upon treatment with NaCl, ABA and in response to dessication. mRNA expression under drought conditions is apparent particularly in leaves and flowers.	O.I.	C.G.	H.G.
13.0	99.4	87.7	At5g65630	836689	GTE7 (Global transcription factor group E 7)	This gene is predicted to encode a bromodomain-containing protein. Plant lines expressing RNAi constructs targeted against GTE7 show some resistance to agrobacterium-mediated root transformation.	O.I.	C.G.	H.G.
12.9	99.3	125.8	At1g68520	843181	zinc finger (B-box type) family protein	F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;POMF	O.I.	C.G.	H.G.
12.6	99.3	100.9	At3g51450	824308	strictosidine synthase family protein	F:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endomembrane system;BPMOAF	O.I.	C.G.	H.G.
12.6	99.3	85.5	At5g07010	830592	ST2A (SULFOTRANSFERASE 2A)	Encodes a sulfotransferase that acts specifically on 11- and 12-hydroxyjasmonic acid. Transcript levels for this enzyme are increased by treatments with jasmonic acid (JA), 12-hydroxyJA, JA-isoleucine, and 12-oxyphytodienoic acid (a JA precursor).	O.I.	C.G.	H.G.
12.5	99.3	209.8	At5g42650	834273	AOS (ALLENE OXIDE SYNTHASE)	Encodes a member of the cytochrome p450 CYP74 gene family that functions as an allene oxide synthase. This enzyme catalyzes dehydration of the hydroperoxide to an unstable allene oxide in the JA biosynthetic pathway. It shows a dual catalytic activity, the major one being a 13-AOS but also expressing a 9-AOS activity.	O.I.	C.G.	H.G.
12.5	99.3	63.1	At1g68600	843190	unknown protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;BPFO	O.I.	C.G.	H.G.
12.3	99.3	55.6	At3g27960	822420	kinesin light chain-related	F:binding;P:biological_process unknown;C:plasma membrane;MBOFPAV	O.I.	C.G.	H.G.
11.7	99.3	118.1	At3g14067	820621	subtilase family protein	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast, plasma membrane, vacuole, plant-type cell wall;BPOFAM	O.I.	C.G.	H.G.
11.6	99.3	188.3	At1g19670	838554	ATCLH1 (ARABIDOPSIS THALIANA CORONATINE-INDUCED PROTEIN 1)	Chlorophyllase is the first enzyme involved in chlorophyll degradation. It catalyzes the hydrolysis of the ester bond to yield chlorophyllide and phytol. AtCLH1 lacks a typical signal sequence for the chloroplast. Its expression is induced rapidly by methyljasmonate, a known promoter of senescence and chlorophyll degradation.	O.I.	C.G.	H.G.
11.6	99.3	58.5	At2g34810	818046	FAD-binding domain-containing protein	F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:response to jasmonic acid stimulus, response to wounding;C:endomembrane system;FBPOAM	O.I.	C.G.	H.G.
11.6	99.3	18.0	At2g03710	814898	SEP4 (SEPALLATA 4)	This gene belongs to the family of SEP genes. It is involved in the development of sepals, petals, stamens and carpels. Additionally, it plays a central role in the determination of flower meristem and organ identity.	O.I.	C.G.	H.G.
11.5	99.3	55.4	At1g63090	842612	AtPP2-A11 (Phloem protein 2-A11)	F:carbohydrate binding;P:N-terminal protein myristoylation;C:cellular_component unknown;P	O.I.	C.G.	H.G.
11.5	99.3	46.9	At5g11060	830973	KNAT4 (KNOTTED1-LIKE HOMEOBOX GENE 4)	A member of Class II KN1-like homeodomain transcription factors (together with KNAT3 and KNAT5), with greatest homology to the maize knox1 homeobox protein. Expression regulated by light. Detected in all tissues examined, but most prominent in leaves and young siliques. Transient expression of GFP translational fusion protein suggests bipartite localization in nucleus and cytoplasm. KNAT4 promoter activity showed cell-type specific pattern along longitudinal root axis; GUS expression pattern started at the elongation zone, predominantly in the phloem and pericycle cells, extending to endodermis toward the base of the root.	O.I.	C.G.	H.G.
11.4	99.3	57.4	At1g07720	837286	KCS3 (3-KETOACYL-COA SYNTHASE 3)	Encodes KCS3, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).	O.I.	C.G.	H.G.
11.4	99.3	32.7	At3g07650	819956	COL9 (CONSTANS-LIKE 9)	This gene belongs to the CO (CONSTANS) gene family. This gene family is divided in three subgroups: groups III, to which COL9 belongs, is characterised by one B-box (supposed to regulate protein-protein interactions) and a second diverged zinc finger. COL9 downregulates expression of CO (CONSTANS) as well as FT and SOC1 which are known regulatory targets of CO.	O.I.	C.G.	H.G.
11.1	99.2	53.3	At5g58670	835981	PLC1 (PHOSPHOLIPASE C 1)	phosphatidylinositol-specific phospholipase C is induced to a significant extent under various environmental stresses, such as dehydration, salinity, and low temperature. May play a role in secondary ABA response. There are two genes called ATPLC1, one corresponding to AT4g38530 and one corresponding ot AT5g58670 (this one).	O.I.	C.G.	H.G.
11.1	99.2	47.7	At2g34930	818058	disease resistance family protein	F:protein binding;P:signal transduction, defense response to fungus, defense response;C:cell wall;PMOBFAV	O.I.	C.G.	H.G.
10.6	99.2	128.8	At5g05600	830443	oxidoreductase, 2OG-Fe(II) oxygenase family protein	F:oxidoreductase activity, iron ion binding;P:response to salt stress;C:unknown;POBFM	O.I.	C.G.	H.G.
10.6	99.2	89.1	At5g06530	830541	ABC transporter family protein	F:ATPase activity, coupled to transmembrane movement of substances;P:unknown;C:plasma membrane;BOMFAPV	O.I.	C.G.	H.G.
10.5	99.2	70.9	At5g37770	833755	TCH2 (TOUCH 2)	Encodes a protein with 40% similarity to calmodulin. Binds Ca(2+) and, as a consequence, undergoes conformational changes. CML24 expression occurs in all major organs, and transcript levels are increased from 2- to 15-fold in plants subjected to touch, darkness, heat, cold, hydrogen peroxide, abscisic acid (ABA), and indole-3-acetic acid. However, CML24 protein accumulation changes were not detectable. The putative CML24 regulatory region confers reporter expression at sites of predicted mechanical stress; in regions undergoing growth; in vascular tissues and various floral organs; and in stomata, trichomes, and hydathodes. CML24-underexpressing transgenics are resistant to ABA inhibition of germination and seedling growth, are defective in long-day induction of flowering, and have enhanced tolerance to CoCl(2), molybdic acid, ZnSO(4), and MgCl(2).	O.I.	C.G.	H.G.
10.4	99.2	100.3	At4g15210	827185	BAM5 (BETA-AMYLASE 5)	cytosolic beta-amylase expressed in rosette leaves and inducible by sugar. RAM1 mutants have reduced beta amylase in leaves and stems.	O.I.	C.G.	H.G.
10.3	99.2	60.1	At2g38750	818457	ANNAT4 (ANNEXIN ARABIDOPSIS 4)	Annexins are a family of calcium dependent membrane binding proteins though to be involved in Golgi mediated secretion. This is one of four annexins identified in Arabidopsis.	O.I.	C.G.	H.G.
10.2	99.2	124.0	At1g69870	843323	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:response to salt stress, oligopeptide transport;C:plasma membrane, membrane;PBMFO	O.I.	C.G.	H.G.
10.0	99.2	27.4	At1g70090	843345	LGT8 (GLUCOSYL TRANSFERASE FAMILY 8)	Encodes a protein with putative galacturonosyltransferase activity.	O.I.	C.G.	H.G.
9.9	99.1	106.3	At5g11070	830974	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
9.8	99.1	126.2	At3g28220	822448	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	F:molecular_function unknown;P:response to salt stress;C:vacuole, chloroplast envelope;PMO	O.I.	C.G.	H.G.
9.8	99.1	65.2	At2g43290	818931	MSS3 (multicopy suppressors of snf4 deficiency in yeast 3)	Encodes calmodulin-like MSS3.	O.I.	C.G.	H.G.
9.7	99.1	203.3	At2g42530	818853	COR15B (COLD REGULATED 15B)	F:unknown;P:response to cold;C:chloroplast, chloroplast stroma, chloroplast envelope;PBOMF	O.I.	C.G.	H.G.
9.7	99.1	66.5	At1g30260	839906	-	F:molecular_function unknown;P:response to cytokinin stimulus;C:unknown;P	O.I.	C.G.	H.G.
9.5	99.1	73.9	At3g44260	823551	CCR4-NOT transcription complex protein, putative	F:ribonuclease activity, nucleic acid binding;P:response to biotic stimulus, response to wounding, RNA modification;C:nucleus;MPOF	O.I.	C.G.	H.G.
9.4	99.1	19.6	At4g15660	827243	glutaredoxin family protein	F:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFOB	O.I.	C.G.	H.G.
9.3	99.1	76.7	At1g74450	843786	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
9.3	99.1	75.9	At1g15010	838066	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PB	O.I.	C.G.	H.G.
9.2	99.1	198.1	At4g27520	828861	plastocyanin-like domain-containing protein	F:electron carrier activity, copper ion binding;P:unknown;C:in 6 components;MOFBPVA	O.I.	C.G.	H.G.
9.2	99.1	155.7	At2g06050	815160	OPR3 (OPDA-REDUCTASE 3)	Encodes a 12-oxophytodienoate reductase that is required for jasmonate biosynthesis. Mutants are male sterile and defective in pollen dehiscence.	O.I.	C.G.	H.G.
9.2	99.1	89.1	At5g23660	832431	MTN3 (Arabidopsis homolog of Medicago truncatula MTN3)	homolog of the Medicago nodulin MTN3	O.I.	C.G.	H.G.
9.1	99.1	84.7	At1g72180	843550	leucine-rich repeat transmembrane protein kinase, putative	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
9.1	99.1	58.3	At5g47640	834815	NF-YB2 (NUCLEAR FACTOR Y, SUBUNIT B2)	F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus, intracellular;MPFO	O.I.	C.G.	H.G.
9.0	99.1	51.8	At5g02940	831426	-	F:unknown;P:unknown;C:chloroplast, chloroplast envelope;POB	O.I.	C.G.	H.G.
8.9	99.0	29.3	At3g48720	824033	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO	O.I.	C.G.	H.G.
8.8	99.0	177.7	At2g16660	816167	nodulin family protein	F:unknown;P:unknown;C:endomembrane system;BOPFAM	O.I.	C.G.	H.G.
8.8	99.0	65.7	At1g52720	841705	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.

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GSM ID	GSM133068
Assay name	2530
GSE experiment	GSE5685: AtGenExpress: Pathogen Series: Pseudomonas half leaf injection

Microarray experiments to specifically-expressed genes

GSM ID GSM133068 Assay name 2530 GSE experiment GSE5685: AtGenExpress: Pathogen Series: Pseudomonas half leaf injection

GSM ID GSM133068

Assay name 2530

GSE experiment GSE5685: AtGenExpress: Pathogen Series: Pseudomonas half leaf injection