CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM133056

Assay name 2798

GSE experiment GSE5685: AtGenExpress: Pathogen Series: Pseudomonas half leaf injection

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
28.6 99.7 119.1 At1g30250 839905 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
27.4 99.7 125.5 At1g74930 843832 ORA47 encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. O.I. C.G. H.G.
26.0 99.7 77.5 At4g27654 828878 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
21.6 99.6 45.1 At3g07650 819956 COL9 (CONSTANS-LIKE 9) This gene belongs to the CO (CONSTANS) gene family. This gene family is divided in three subgroups: groups III, to which COL9 belongs, is characterised by one B-box (supposed to regulate protein-protein interactions) and a second diverged zinc finger. COL9 downregulates expression of CO (CONSTANS) as well as FT and SOC1 which are known regulatory targets of CO. O.I. C.G. H.G.
21.4 99.6 32.8 At4g27657 828879 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
21.2 99.6 43.4 At5g25240 832595 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
20.5 99.6 80.2 At3g54810 824646 zinc finger (GATA type) family protein Encodes a protein containing a GATA type zinc finger domain that is expressed in the embryo axis and involved in germination. Mutants have a reduced rate of germination even when stratified. O.I. C.G. H.G.
20.2 99.6 86.9 At5g47640 834815 NF-YB2 (NUCLEAR FACTOR Y, SUBUNIT B2) F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus, intracellular;MPFO O.I. C.G. H.G.
19.2 99.6 82.5 At4g19530 827695 disease resistance protein (TIR-NBS-LRR class), putative Encodes a TIR-NB-LRR resistance protein. Transient expression in tobacco induces cell death. O.I. C.G. H.G.
18.3 99.5 102.6 At3g28290 822455 AT14A Encodes a protein with sequence similarity to integrins. Localized to the cytoplasm and plasma membrane. Expressed in all tissues assayed. O.I. C.G. H.G.
18.1 99.5 154.2 At5g23240 832388 DNAJ heat shock N-terminal domain-containing protein F:unfolded protein binding, heat shock protein binding;P:protein folding;C:chloroplast;BOMPFAV O.I. C.G. H.G.
17.4 99.5 28.7 At2g23130 816845 AGP17 (ARABINOGALACTAN PROTEIN 17) AGP17 is a lysine-rich arabinogalactan-protein (AGP) and part of a multi-gene family of glycoproteins with approx. 50 members. It falls into one subclass with AGP18 and AGP19, other lysine-rich AGPs. 84% of its proline residues are hydroxylated to hydroproline and its heavy glycosylation accounts for appr. 69% of the molecular weight. The main glycosyl residues are arabinose (30.1%) and galactose (55.1%). Glycosyl linkages are consistent with type II arabinogalactans. AGP17 is predicted to have a glycosylphosphatidylinositol (GPI)anchor and is localized to the plasma membrane and Hechtian strands. It is expressed in young/old leaves, shoots, suspension cultures and flowers. O.I. C.G. H.G.
16.6 99.5 120.4 At2g47440 819357 DNAJ heat shock N-terminal domain-containing protein F:binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;PMFOB O.I. C.G. H.G.
15.8 99.5 70.8 At1g68600 843190 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;BPFO O.I. C.G. H.G.
15.1 99.4 41.5 At4g02630 828217 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. C.G. H.G.
14.9 99.4 92.7 At3g44260 823551 CCR4-NOT transcription complex protein, putative F:ribonuclease activity, nucleic acid binding;P:response to biotic stimulus, response to wounding, RNA modification;C:nucleus;MPOF O.I. C.G. H.G.
14.2 99.4 73.5 At1g73540 843688 atnudt21 (Arabidopsis thaliana Nudix hydrolase homolog 21) F:hydrolase activity;P:biological_process unknown;C:chloroplast;BMPOFA O.I. C.G. H.G.
14.2 99.4 36.4 At2g44740 819082 CYCP4 F:cyclin-dependent protein kinase activity;P:regulation of cell cycle;C:unknown;FOMPB O.I. C.G. H.G.
13.8 99.4 103.4 At4g37260 829880 MYB73 (MYB DOMAIN PROTEIN 73) Member of the R2R3 factor gene family. O.I. C.G. H.G.
13.8 99.4 82.7 At3g04210 819576 disease resistance protein (TIR-NBS class), putative F:transmembrane receptor activity, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, endomembrane system;PBMO O.I. C.G. H.G.
13.3 99.4 30.6 At4g32800 829416 AP2 domain-containing transcription factor TINY, putative encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. O.I. C.G. H.G.
13.1 99.4 105.3 At3g19680 821505 unknown protein F:unknown;P:unknown;C:plasma membrane;OPMBF O.I. C.G. H.G.
13.0 99.4 31.3 At3g19850 821522 phototropic-responsive NPH3 family protein F:protein binding, signal transducer activity;P:response to light stimulus;C:endomembrane system;P O.I. C.G. H.G.
12.9 99.3 57.5 At5g58670 835981 PLC1 (PHOSPHOLIPASE C 1) phosphatidylinositol-specific phospholipase C is induced to a significant extent under various environmental stresses, such as dehydration, salinity, and low temperature. May play a role in secondary ABA response. There are two genes called ATPLC1, one corresponding to AT4g38530 and one corresponding ot AT5g58670 (this one). O.I. C.G. H.G.
12.8 99.3 89.7 At4g27652 828877 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
12.4 99.3 48.2 At4g37240 829878 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P O.I. C.G. H.G.
12.4 99.3 33.5 At4g35320 829686 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
12.2 99.3 19.0 At1g72240 843556 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
12.1 99.3 124.7 At2g44210 819029 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;PFB O.I. C.G. H.G.
12.1 99.3 72.9 At3g50060 824168 MYB77 Encodes a member of the R2R3 transcription factor gene family. Expressed in response to potassium deprivation and auxin. Involved in lateral root development. Interacts with ARF7 and regulates the expression of some auxin responsive genes. O.I. C.G. H.G.
12.1 99.3 30.0 At1g70090 843345 LGT8 (GLUCOSYL TRANSFERASE FAMILY 8) Encodes a protein with putative galacturonosyltransferase activity. O.I. C.G. H.G.
11.9 99.3 86.8 At5g44680 834497 methyladenine glycosylase family protein F:DNA-3-methyladenine glycosylase I activity, catalytic activity;P:DNA repair, base-excision repair;C:unknown;BOPAMF O.I. C.G. H.G.
11.8 99.3 43.4 At4g02130 827438 GATL6 Encodes a protein with putative galacturonosyltransferase activity. O.I. C.G. H.G.
11.5 99.3 63.6 At3g20810 821629 transcription factor jumonji (jmjC) domain-containing protein F:transcription factor activity;P:biological_process unknown;C:cellular_component unknown;MBOFPV O.I. C.G. H.G.
11.1 99.2 116.8 At1g68520 843181 zinc finger (B-box type) family protein F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;POMF O.I. C.G. H.G.
11.0 99.2 135.0 At1g29395 839815 COR414-TM1 encodes a protein similar to the cold acclimation protein WCOR413 in wheat. Expression is induced by short-term cold-treatment, water deprivation, and abscisic acid treatment. Possibly targeted to thylakoid membrane. O.I. C.G. H.G.
11.0 99.2 42.1 At1g53230 841756 TCP3 Encodes a member of a recently identified plant transcription factor family that includes Teosinte branched 1, Cycloidea 1, and proliferating cell nuclear antigen (PCNA) factors, PCF1 and 2. Regulated by miR319. Involved in heterchronic regulation of leaf differentiation. O.I. C.G. H.G.
10.8 99.2 110.7 At2g17230 816228 EXL5 (EXORDIUM LIKE 5) F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PB O.I. C.G. H.G.
10.8 99.2 101.5 At3g04640 819622 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;BMPOFVA O.I. C.G. H.G.
10.8 99.2 21.4 At1g77640 844099 AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. O.I. C.G. H.G.
10.8 99.2 20.4 At2g23200 816852 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
10.6 99.2 35.5 At1g10020 837537 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFMO O.I. C.G. H.G.
10.5 99.2 109.7 At5g11070 830974 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
10.4 99.2 44.6 At5g11060 830973 KNAT4 (KNOTTED1-LIKE HOMEOBOX GENE 4) A member of Class II KN1-like homeodomain transcription factors (together with KNAT3 and KNAT5), with greatest homology to the maize knox1 homeobox protein. Expression regulated by light. Detected in all tissues examined, but most prominent in leaves and young siliques. Transient expression of GFP translational fusion protein suggests bipartite localization in nucleus and cytoplasm. KNAT4 promoter activity showed cell-type specific pattern along longitudinal root axis; GUS expression pattern started at the elongation zone, predominantly in the phloem and pericycle cells, extending to endodermis toward the base of the root. O.I. C.G. H.G.
10.3 99.2 16.4 At2g36050 818178 OFP15 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 15) F:unknown;P:unknown;C:chloroplast;PO O.I. C.G. H.G.
10.2 99.2 28.0 At1g72920 843623 disease resistance protein (TIR-NBS class), putative F:transmembrane receptor activity;P:response to wounding, defense response;C:intrinsic to membrane;PB O.I. C.G. H.G.
10.2 99.2 24.6 At1g12710 837826 AtPP2-A12 (Phloem protein 2-A12) This gene is predicted to encode a protein with a PP2 domain. This domain in present in lectins found in squash and cucumber, suggesting that this protein could potentially have carbohydrate binding capabilities. O.I. C.G. H.G.
10.2 99.2 21.3 At1g67470 843068 protein kinase family protein F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;PMOBFVA O.I. C.G. H.G.
10.1 99.2 26.7 At3g12830 820465 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO O.I. C.G. H.G.
10.0 99.2 118.1 At1g35140 840399 PHI-1 (PHOSPHATE-INDUCED 1) At1g35140 (At1g35140/T32G9_32) mRNA, complete cds O.I. C.G. H.G.
10.0 99.2 76.2 At1g65190 842826 protein kinase family protein F:protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;PMOBFV O.I. C.G. H.G.
10.0 99.2 42.3 At5g03120 831807 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
9.9 99.1 15.7 At1g22370 838844 AtUGT85A5 (UDP-glucosyl transferase 85A5) F:transferase activity, transferring glycosyl groups, glucuronosyltransferase activity;P:metabolic process;C:unknown;PMVBOF O.I. C.G. H.G.
9.8 99.1 143.5 At4g14400 827085 ACD6 (ACCELERATED CELL DEATH 6) encodes a novel protein with putative ankyrin and transmembrane regions. It is a member of one of the largest uncharacterized gene families in higher plants. The gene is involved in resistance to Pseudomonas syringae. O.I. C.G. H.G.
9.8 99.1 27.8 At3g56060 824772 glucose-methanol-choline (GMC) oxidoreductase family protein F:aldehyde-lyase activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding;P:cellular alcohol metabolic process;C:endomembrane system;OBFMPVA O.I. C.G. H.G.
9.5 99.1 250.6 At4g08950 826473 EXO (EXORDIUM) F:molecular_function unknown;P:response to brassinosteroid stimulus;C:cell wall, plant-type cell wall;PB O.I. C.G. H.G.
9.5 99.1 34.7 At2g01870 814718 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;P O.I. C.G. H.G.
9.5 99.1 12.6 At2g41330 818731 glutaredoxin family protein F:electron carrier activity, protein disulfide oxidoreductase activity;P:N-terminal protein myristoylation, cell redox homeostasis;C:chloroplast;PMBO O.I. C.G. H.G.
9.4 99.1 15.6 At2g17550 816262 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFAB O.I. C.G. H.G.
9.3 99.1 193.9 At1g66100 842924 thionin, putative Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660. O.I. C.G. H.G.
9.3 99.1 172.3 At4g32340 829368 - F:unknown;P:unknown;C:unknown;MPBOFVA O.I. C.G. H.G.
9.2 99.1 32.3 At1g07050 837216 CONSTANS-like protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POF O.I. C.G. H.G.
8.9 99.0 41.1 At2g03550 814884 hydrolase F:hydrolase activity;P:metabolic process;C:cellular_component unknown;BMOPFAV O.I. C.G. H.G.
8.7 99.0 121.4 At4g24570 828559 mitochondrial substrate carrier family protein F:binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPO O.I. C.G. H.G.
8.7 99.0 19.1 At5g59000 836017 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOFPVBA O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
28.6	99.7	119.1	At1g30250	839905	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
27.4	99.7	125.5	At1g74930	843832	ORA47	encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.	O.I.	C.G.	H.G.
26.0	99.7	77.5	At4g27654	828878	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
21.6	99.6	45.1	At3g07650	819956	COL9 (CONSTANS-LIKE 9)	This gene belongs to the CO (CONSTANS) gene family. This gene family is divided in three subgroups: groups III, to which COL9 belongs, is characterised by one B-box (supposed to regulate protein-protein interactions) and a second diverged zinc finger. COL9 downregulates expression of CO (CONSTANS) as well as FT and SOC1 which are known regulatory targets of CO.	O.I.	C.G.	H.G.
21.4	99.6	32.8	At4g27657	828879	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
21.2	99.6	43.4	At5g25240	832595	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
20.5	99.6	80.2	At3g54810	824646	zinc finger (GATA type) family protein	Encodes a protein containing a GATA type zinc finger domain that is expressed in the embryo axis and involved in germination. Mutants have a reduced rate of germination even when stratified.	O.I.	C.G.	H.G.
20.2	99.6	86.9	At5g47640	834815	NF-YB2 (NUCLEAR FACTOR Y, SUBUNIT B2)	F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus, intracellular;MPFO	O.I.	C.G.	H.G.
19.2	99.6	82.5	At4g19530	827695	disease resistance protein (TIR-NBS-LRR class), putative	Encodes a TIR-NB-LRR resistance protein. Transient expression in tobacco induces cell death.	O.I.	C.G.	H.G.
18.3	99.5	102.6	At3g28290	822455	AT14A	Encodes a protein with sequence similarity to integrins. Localized to the cytoplasm and plasma membrane. Expressed in all tissues assayed.	O.I.	C.G.	H.G.
18.1	99.5	154.2	At5g23240	832388	DNAJ heat shock N-terminal domain-containing protein	F:unfolded protein binding, heat shock protein binding;P:protein folding;C:chloroplast;BOMPFAV	O.I.	C.G.	H.G.
17.4	99.5	28.7	At2g23130	816845	AGP17 (ARABINOGALACTAN PROTEIN 17)	AGP17 is a lysine-rich arabinogalactan-protein (AGP) and part of a multi-gene family of glycoproteins with approx. 50 members. It falls into one subclass with AGP18 and AGP19, other lysine-rich AGPs. 84% of its proline residues are hydroxylated to hydroproline and its heavy glycosylation accounts for appr. 69% of the molecular weight. The main glycosyl residues are arabinose (30.1%) and galactose (55.1%). Glycosyl linkages are consistent with type II arabinogalactans. AGP17 is predicted to have a glycosylphosphatidylinositol (GPI)anchor and is localized to the plasma membrane and Hechtian strands. It is expressed in young/old leaves, shoots, suspension cultures and flowers.	O.I.	C.G.	H.G.
16.6	99.5	120.4	At2g47440	819357	DNAJ heat shock N-terminal domain-containing protein	F:binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;PMFOB	O.I.	C.G.	H.G.
15.8	99.5	70.8	At1g68600	843190	unknown protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;BPFO	O.I.	C.G.	H.G.
15.1	99.4	41.5	At4g02630	828217	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA	O.I.	C.G.	H.G.
14.9	99.4	92.7	At3g44260	823551	CCR4-NOT transcription complex protein, putative	F:ribonuclease activity, nucleic acid binding;P:response to biotic stimulus, response to wounding, RNA modification;C:nucleus;MPOF	O.I.	C.G.	H.G.
14.2	99.4	73.5	At1g73540	843688	atnudt21 (Arabidopsis thaliana Nudix hydrolase homolog 21)	F:hydrolase activity;P:biological_process unknown;C:chloroplast;BMPOFA	O.I.	C.G.	H.G.
14.2	99.4	36.4	At2g44740	819082	CYCP4	F:cyclin-dependent protein kinase activity;P:regulation of cell cycle;C:unknown;FOMPB	O.I.	C.G.	H.G.
13.8	99.4	103.4	At4g37260	829880	MYB73 (MYB DOMAIN PROTEIN 73)	Member of the R2R3 factor gene family.	O.I.	C.G.	H.G.
13.8	99.4	82.7	At3g04210	819576	disease resistance protein (TIR-NBS class), putative	F:transmembrane receptor activity, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, endomembrane system;PBMO	O.I.	C.G.	H.G.
13.3	99.4	30.6	At4g32800	829416	AP2 domain-containing transcription factor TINY, putative	encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.	O.I.	C.G.	H.G.
13.1	99.4	105.3	At3g19680	821505	unknown protein	F:unknown;P:unknown;C:plasma membrane;OPMBF	O.I.	C.G.	H.G.
13.0	99.4	31.3	At3g19850	821522	phototropic-responsive NPH3 family protein	F:protein binding, signal transducer activity;P:response to light stimulus;C:endomembrane system;P	O.I.	C.G.	H.G.
12.9	99.3	57.5	At5g58670	835981	PLC1 (PHOSPHOLIPASE C 1)	phosphatidylinositol-specific phospholipase C is induced to a significant extent under various environmental stresses, such as dehydration, salinity, and low temperature. May play a role in secondary ABA response. There are two genes called ATPLC1, one corresponding to AT4g38530 and one corresponding ot AT5g58670 (this one).	O.I.	C.G.	H.G.
12.8	99.3	89.7	At4g27652	828877	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
12.4	99.3	48.2	At4g37240	829878	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P	O.I.	C.G.	H.G.
12.4	99.3	33.5	At4g35320	829686	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
12.2	99.3	19.0	At1g72240	843556	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
12.1	99.3	124.7	At2g44210	819029	unknown protein	F:unknown;P:biological_process unknown;C:endomembrane system;PFB	O.I.	C.G.	H.G.
12.1	99.3	72.9	At3g50060	824168	MYB77	Encodes a member of the R2R3 transcription factor gene family. Expressed in response to potassium deprivation and auxin. Involved in lateral root development. Interacts with ARF7 and regulates the expression of some auxin responsive genes.	O.I.	C.G.	H.G.
12.1	99.3	30.0	At1g70090	843345	LGT8 (GLUCOSYL TRANSFERASE FAMILY 8)	Encodes a protein with putative galacturonosyltransferase activity.	O.I.	C.G.	H.G.
11.9	99.3	86.8	At5g44680	834497	methyladenine glycosylase family protein	F:DNA-3-methyladenine glycosylase I activity, catalytic activity;P:DNA repair, base-excision repair;C:unknown;BOPAMF	O.I.	C.G.	H.G.
11.8	99.3	43.4	At4g02130	827438	GATL6	Encodes a protein with putative galacturonosyltransferase activity.	O.I.	C.G.	H.G.
11.5	99.3	63.6	At3g20810	821629	transcription factor jumonji (jmjC) domain-containing protein	F:transcription factor activity;P:biological_process unknown;C:cellular_component unknown;MBOFPV	O.I.	C.G.	H.G.
11.1	99.2	116.8	At1g68520	843181	zinc finger (B-box type) family protein	F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;POMF	O.I.	C.G.	H.G.
11.0	99.2	135.0	At1g29395	839815	COR414-TM1	encodes a protein similar to the cold acclimation protein WCOR413 in wheat. Expression is induced by short-term cold-treatment, water deprivation, and abscisic acid treatment. Possibly targeted to thylakoid membrane.	O.I.	C.G.	H.G.
11.0	99.2	42.1	At1g53230	841756	TCP3	Encodes a member of a recently identified plant transcription factor family that includes Teosinte branched 1, Cycloidea 1, and proliferating cell nuclear antigen (PCNA) factors, PCF1 and 2. Regulated by miR319. Involved in heterchronic regulation of leaf differentiation.	O.I.	C.G.	H.G.
10.8	99.2	110.7	At2g17230	816228	EXL5 (EXORDIUM LIKE 5)	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PB	O.I.	C.G.	H.G.
10.8	99.2	101.5	At3g04640	819622	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;BMPOFVA	O.I.	C.G.	H.G.
10.8	99.2	21.4	At1g77640	844099	AP2 domain-containing transcription factor, putative	encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.	O.I.	C.G.	H.G.
10.8	99.2	20.4	At2g23200	816852	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
10.6	99.2	35.5	At1g10020	837537	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFMO	O.I.	C.G.	H.G.
10.5	99.2	109.7	At5g11070	830974	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
10.4	99.2	44.6	At5g11060	830973	KNAT4 (KNOTTED1-LIKE HOMEOBOX GENE 4)	A member of Class II KN1-like homeodomain transcription factors (together with KNAT3 and KNAT5), with greatest homology to the maize knox1 homeobox protein. Expression regulated by light. Detected in all tissues examined, but most prominent in leaves and young siliques. Transient expression of GFP translational fusion protein suggests bipartite localization in nucleus and cytoplasm. KNAT4 promoter activity showed cell-type specific pattern along longitudinal root axis; GUS expression pattern started at the elongation zone, predominantly in the phloem and pericycle cells, extending to endodermis toward the base of the root.	O.I.	C.G.	H.G.
10.3	99.2	16.4	At2g36050	818178	OFP15 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 15)	F:unknown;P:unknown;C:chloroplast;PO	O.I.	C.G.	H.G.
10.2	99.2	28.0	At1g72920	843623	disease resistance protein (TIR-NBS class), putative	F:transmembrane receptor activity;P:response to wounding, defense response;C:intrinsic to membrane;PB	O.I.	C.G.	H.G.
10.2	99.2	24.6	At1g12710	837826	AtPP2-A12 (Phloem protein 2-A12)	This gene is predicted to encode a protein with a PP2 domain. This domain in present in lectins found in squash and cucumber, suggesting that this protein could potentially have carbohydrate binding capabilities.	O.I.	C.G.	H.G.
10.2	99.2	21.3	At1g67470	843068	protein kinase family protein	F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;PMOBFVA	O.I.	C.G.	H.G.
10.1	99.2	26.7	At3g12830	820465	auxin-responsive family protein	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO	O.I.	C.G.	H.G.
10.0	99.2	118.1	At1g35140	840399	PHI-1 (PHOSPHATE-INDUCED 1)	At1g35140 (At1g35140/T32G9_32) mRNA, complete cds	O.I.	C.G.	H.G.
10.0	99.2	76.2	At1g65190	842826	protein kinase family protein	F:protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;PMOBFV	O.I.	C.G.	H.G.
10.0	99.2	42.3	At5g03120	831807	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
9.9	99.1	15.7	At1g22370	838844	AtUGT85A5 (UDP-glucosyl transferase 85A5)	F:transferase activity, transferring glycosyl groups, glucuronosyltransferase activity;P:metabolic process;C:unknown;PMVBOF	O.I.	C.G.	H.G.
9.8	99.1	143.5	At4g14400	827085	ACD6 (ACCELERATED CELL DEATH 6)	encodes a novel protein with putative ankyrin and transmembrane regions. It is a member of one of the largest uncharacterized gene families in higher plants. The gene is involved in resistance to Pseudomonas syringae.	O.I.	C.G.	H.G.
9.8	99.1	27.8	At3g56060	824772	glucose-methanol-choline (GMC) oxidoreductase family protein	F:aldehyde-lyase activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding;P:cellular alcohol metabolic process;C:endomembrane system;OBFMPVA	O.I.	C.G.	H.G.
9.5	99.1	250.6	At4g08950	826473	EXO (EXORDIUM)	F:molecular_function unknown;P:response to brassinosteroid stimulus;C:cell wall, plant-type cell wall;PB	O.I.	C.G.	H.G.
9.5	99.1	34.7	At2g01870	814718	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;P	O.I.	C.G.	H.G.
9.5	99.1	12.6	At2g41330	818731	glutaredoxin family protein	F:electron carrier activity, protein disulfide oxidoreductase activity;P:N-terminal protein myristoylation, cell redox homeostasis;C:chloroplast;PMBO	O.I.	C.G.	H.G.
9.4	99.1	15.6	At2g17550	816262	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFAB	O.I.	C.G.	H.G.
9.3	99.1	193.9	At1g66100	842924	thionin, putative	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.	O.I.	C.G.	H.G.
9.3	99.1	172.3	At4g32340	829368	-	F:unknown;P:unknown;C:unknown;MPBOFVA	O.I.	C.G.	H.G.
9.2	99.1	32.3	At1g07050	837216	CONSTANS-like protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POF	O.I.	C.G.	H.G.
8.9	99.0	41.1	At2g03550	814884	hydrolase	F:hydrolase activity;P:metabolic process;C:cellular_component unknown;BMOPFAV	O.I.	C.G.	H.G.
8.7	99.0	121.4	At4g24570	828559	mitochondrial substrate carrier family protein	F:binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPO	O.I.	C.G.	H.G.
8.7	99.0	19.1	At5g59000	836017	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOFPVBA	O.I.	C.G.	H.G.

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GSM ID	GSM133056
Assay name	2798
GSE experiment	GSE5685: AtGenExpress: Pathogen Series: Pseudomonas half leaf injection

Microarray experiments to specifically-expressed genes

GSM ID GSM133056 Assay name 2798 GSE experiment GSE5685: AtGenExpress: Pathogen Series: Pseudomonas half leaf injection

GSM ID GSM133056

Assay name 2798

GSE experiment GSE5685: AtGenExpress: Pathogen Series: Pseudomonas half leaf injection