Microarray experiments to specifically-expressed genes

GSM ID GSM133054
Assay name 2796
GSE experiment GSE5685: AtGenExpress: Pathogen Series: Pseudomonas half leaf injection

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
115.599.9143.5At4g17470827458palmitoyl protein thioesterase family proteinF:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFOO.I.C.G.H.G.
37.199.724.6At1g21240838719WAK3 (wall associated kinase 3)encodes a wall-associated kinaseO.I.C.G.H.G.
32.899.765.8At1g14230837984nucleoside phosphatase family protein / GDA1/CD39 family proteinF:hydrolase activity;P:unknown;C:unknown;MFPOBO.I.C.G.H.G.
26.999.779.8At1g36280840534adenylosuccinate lyase, putative / adenylosuccinase, putativeF:N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity, catalytic activity;P:purine ribonucleotide biosynthetic process, purine base biosynthetic process, IMP biosynthetic process;C:chloroplast;BOMFAPO.I.C.G.H.G.
26.499.7184.9At4g08870826458arginase, putativeEncodes one of the two arginase in the genome. Gene expression is enhanced by methyl jasmonate treatment.O.I.C.G.H.G.
25.399.615.5At4g13410826972ATCSLA15encodes a gene similar to cellulose synthaseO.I.C.G.H.G.
22.899.649.2At1g19250838508FMO1 (FLAVIN-DEPENDENT MONOOXYGENASE 1)FMO1 is required for full expression of TIR-NB-LRR–conditioned resistance to avirulent pathogens and for basal resistance to invasive virulent pathogens. Functions in an EDS1-regulated but SA-independent mechanism that promotes resistance and cell death at pathogen infection sites.O.I.C.G.H.G.
22.099.6253.5At2g24850817022TAT3 (TYROSINE AMINOTRANSFERASE 3)Encodes a tyrosine aminotransferase that is responsive to treatment with jasmonic acid.O.I.C.G.H.G.
20.999.6109.7At1g74930843832ORA47encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.O.I.C.G.H.G.
20.399.6100.2At1g30250839905unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
20.099.679.8At1g68600843190unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;BPFOO.I.C.G.H.G.
19.799.6282.7At1g66100842924thionin, putativePredicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.O.I.C.G.H.G.
19.299.644.0At3g11010820272AtRLP34 (Receptor Like Protein 34)F:protein binding, kinase activity;P:signal transduction, defense response;C:cellular_component unknown;PMOBFAVO.I.C.G.H.G.
18.599.562.1At1g31550840045GDSL-motif lipase, putativeF:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:vacuole;PBFOMO.I.C.G.H.G.
18.199.541.2At3g07650819956COL9 (CONSTANS-LIKE 9)This gene belongs to the CO (CONSTANS) gene family. This gene family is divided in three subgroups: groups III, to which COL9 belongs, is characterised by one B-box (supposed to regulate protein-protein interactions) and a second diverged zinc finger. COL9 downregulates expression of CO (CONSTANS) as well as FT and SOC1 which are known regulatory targets of CO.O.I.C.G.H.G.
18.099.518.6At1g17610838337disease resistance protein-relatedF:transmembrane receptor activity, ATP binding;P:signal transduction, apoptosis, innate immune response;C:intrinsic to membrane, endomembrane system;PBOMFO.I.C.G.H.G.
17.799.5361.5At4g23600828460CORI3 (CORONATINE INDUCED 1)Encodes cystine lyase which is expected to be involved in amino acid metabolism, providing the plant with cysteine and the generation of precursors of ethylene biosynthesis. mRNA levels are elevated in response to wounding.O.I.C.G.H.G.
17.699.5151.9At5g23240832388DNAJ heat shock N-terminal domain-containing proteinF:unfolded protein binding, heat shock protein binding;P:protein folding;C:chloroplast;BOMPFAVO.I.C.G.H.G.
17.499.5114.8At3g02570820656MEE31 (MATERNAL EFFECT EMBRYO ARREST 31)Encodes a protein with phosphomannose isomerase activity.O.I.C.G.H.G.
17.099.543.8At1g33960840293AIG1 (AVRRPT2-INDUCED GENE 1)Identified as a gene that is induced by avirulence gene avrRpt2 and RPS2 after infection with Pseudomonas syringae pv maculicola strain ES4326 carrying avrRpt2O.I.C.G.H.G.
16.099.5205.8At1g21250838721WAK1 (CELL WALL-ASSOCIATED KINASE)cell wall-associated kinase, may function as a signaling receptor of extracellular matrix component.O.I.C.G.H.G.
15.799.5159.8At3g28220822448meprin and TRAF homology domain-containing protein / MATH domain-containing proteinF:molecular_function unknown;P:response to salt stress;C:vacuole, chloroplast envelope;PMOO.I.C.G.H.G.
15.199.493.7At4g23140828413CRK6 (CYSTEINE-RICH RLK 6)Arabidopsis thaliana receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307)O.I.C.G.H.G.
15.099.459.6At5g52810835358ornithine cyclodeaminase/mu-crystallin family proteinF:structural constituent of eye lens, binding, catalytic activity;P:arginine catabolic process to glutamate, nopaline catabolic process, metabolic process, octopine catabolic process;C:chloroplast;BOMAFPO.I.C.G.H.G.
14.699.469.5At4g39030830058EDS5 (ENHANCED DISEASE SUSCEPTIBILITY 5)Encodes an orphan multidrug and toxin extrusion transporter. Essential component of salicylic acid-dependent signaling for disease resistance. Member of the MATE-transporter family. Expression induced by salicylic acid. Mutants are salicylic acid-deficient.O.I.C.G.H.G.
14.399.4311.8At3g57260824893BGL2 (BETA-1,3-GLUCANASE 2)beta 1,3-glucanaseO.I.C.G.H.G.
14.399.470.8At3g20810821629transcription factor jumonji (jmjC) domain-containing proteinF:transcription factor activity;P:biological_process unknown;C:cellular_component unknown;MBOFPVO.I.C.G.H.G.
14.099.449.8At2g32680817828AtRLP23 (Receptor Like Protein 23)F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAVO.I.C.G.H.G.
13.899.424.5At3g23110821886AtRLP37 (Receptor Like Protein 37)F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAVO.I.C.G.H.G.
13.799.437.7At1g73805843716calmodulin bindingF:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
13.699.453.9At2g20340816553tyrosine decarboxylase, putativeF:pyridoxal phosphate binding, carboxy-lyase activity, catalytic activity, tyrosine decarboxylase activity;P:amino acid metabolic process, response to wounding;C:cellular_component unknown;MBOFPAVO.I.C.G.H.G.
13.199.424.2At5g52320835308CYP96A4member of CYP96AO.I.C.G.H.G.
12.899.3128.2At2g44210819029unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;PFBO.I.C.G.H.G.
12.599.384.8At3g28290822455AT14AEncodes a protein with sequence similarity to integrins. Localized to the cytoplasm and plasma membrane. Expressed in all tissues assayed.O.I.C.G.H.G.
12.599.348.6At4g16590827360ATCSLA01encodes a gene similar to cellulose synthaseO.I.C.G.H.G.
12.499.381.5At3g14620820690CYP72A8putative cytochrome P450O.I.C.G.H.G.
12.399.320.1At2g04430814983atnudt5 (Arabidopsis thaliana Nudix hydrolase homolog 5)F:hydrolase activity;P:unknown;C:cytosol;BOMPAFVO.I.C.G.H.G.
12.299.3160.7At4g14400827085ACD6 (ACCELERATED CELL DEATH 6)encodes a novel protein with putative ankyrin and transmembrane regions. It is a member of one of the largest uncharacterized gene families in higher plants. The gene is involved in resistance to Pseudomonas syringae.O.I.C.G.H.G.
12.299.367.6At5g47640834815NF-YB2 (NUCLEAR FACTOR Y, SUBUNIT B2)F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus, intracellular;MPFOO.I.C.G.H.G.
12.299.344.2At4g02130827438GATL6Encodes a protein with putative galacturonosyltransferase activity.O.I.C.G.H.G.
12.199.3191.9At1g19670838554ATCLH1 (ARABIDOPSIS THALIANA CORONATINE-INDUCED PROTEIN 1)Chlorophyllase is the first enzyme involved in chlorophyll degradation. It catalyzes the hydrolysis of the ester bond to yield chlorophyllide and phytol. AtCLH1 lacks a typical signal sequence for the chloroplast. Its expression is induced rapidly by methyljasmonate, a known promoter of senescence and chlorophyll degradation.O.I.C.G.H.G.
12.099.332.1At4g03450827913ankyrin repeat family proteinF:protein binding;P:unknown;C:unknown;MOPFBVAO.I.C.G.H.G.
11.899.3107.0At4g15210827185BAM5 (BETA-AMYLASE 5)cytosolic beta-amylase expressed in rosette leaves and inducible by sugar. RAM1 mutants have reduced beta amylase in leaves and stems.O.I.C.G.H.G.
11.599.343.0At1g53230841756TCP3Encodes a member of a recently identified plant transcription factor family that includes Teosinte branched 1, Cycloidea 1, and proliferating cell nuclear antigen (PCNA) factors, PCF1 and 2. Regulated by miR319. Involved in heterchronic regulation of leaf differentiation.O.I.C.G.H.G.
11.499.372.0At1g30260839906-F:molecular_function unknown;P:response to cytokinin stimulus;C:unknown;PO.I.C.G.H.G.
11.399.395.3At2g40750818670WRKY54member of WRKY Transcription Factor; Group IIIO.I.C.G.H.G.
11.399.353.8At5g58670835981PLC1 (PHOSPHOLIPASE C 1)phosphatidylinositol-specific phospholipase C is induced to a significant extent under various environmental stresses, such as dehydration, salinity, and low temperature. May play a role in secondary ABA response. There are two genes called ATPLC1, one corresponding to AT4g38530 and one corresponding ot AT5g58670 (this one).O.I.C.G.H.G. EF hand family proteinF:calcium ion binding;P:biological_process unknown;C:endomembrane system;MPFOBO.I.C.G.H.G.
10.999.245.6At5g11060830973KNAT4 (KNOTTED1-LIKE HOMEOBOX GENE 4)A member of Class II KN1-like homeodomain transcription factors (together with KNAT3 and KNAT5), with greatest homology to the maize knox1 homeobox protein. Expression regulated by light. Detected in all tissues examined, but most prominent in leaves and young siliques. Transient expression of GFP translational fusion protein suggests bipartite localization in nucleus and cytoplasm. KNAT4 promoter activity showed cell-type specific pattern along longitudinal root axis; GUS expression pattern started at the elongation zone, predominantly in the phloem and pericycle cells, extending to endodermis toward the base of the root.O.I.C.G.H.G.
10.999.231.0At2g46510819262ATAIB (ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR)Encodes a nuclear localized BLH domain containing transcriptional activator involved in response to ABA. Overexpression confers enhanced ABA responsiveness while loss of function mutants are ABA sensitive.O.I.C.G.H.G.
10.999.224.7At1g79110844252protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:unknown;C:unknown;MPOVFO.I.C.G.H.G.
10.799.247.5At1g02450837800NIMIN1 (NIM1-INTERACTING 1)NIMIN1 modulates PR gene expression according the following model: NPR1 forms a ternary complex with NIMIN1 and TGA factors upon SAR induction that binds to a positive regulatory cis-element of the PR-1 promoter, termed LS7. This leads to PR-1 gene induction. NIMIN1 decreases transcriptional activation, possibly through its EAR motif, which results in fine-tuning of PR-1 gene expression.O.I.C.G.H.G.
10.699.2127.8At3g60420825213-F:unknown;P:unknown;C:cellular_component unknown;OBFPMO.I.C.G.H.G.
10.699.234.6At1g19300838512PARVUS (PARVUS)The PARVUS/GLZ1 gene encodes a putative family 8 glycosyl transferase that contributes to xylan biosynthesis. Its gene expression shows good co-variance with the IRX3 gene involved in secondary cell wall synthesis. PARVUS/GLZ1 is predicted to have galacturonosyltransferase activity and may be involved in the formation of the complex oligosaccharide sequence present at the reducing end of xylan. PARVUS is expressed in cells undergoing secondary wall thickening, and parvus mutants have thinner cell walls.O.I.C.G.H.G.
10.399.2112.8At1g68520843181zinc finger (B-box type) family proteinF:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;POMFO.I.C.G.H.G.
10.399.287.4At3g11660820338NHL1encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression of this gene is induced by cucumber mosaic virus. Localization of the gene product is similar to that of NHL3 (plasma membrane) but it is yet inconclusive.O.I.C.G.H.G.
10.399.230.3At1g56150842068auxin-responsive family proteinF:molecular_function unknown;P:response to auxin stimulus;C:unknown;POO.I.C.G.H.G.
10.399.224.6At5g59670836088leucine-rich repeat protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
10.399.220.7At5g59000836017zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOFPVBAO.I.C.G.H.G.
10.299.2118.7At5g48380834892leucine-rich repeat family protein / protein kinase family proteinF:protein binding, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVAO.I.C.G.H.G. proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G. (GMC) oxidoreductase family proteinF:aldehyde-lyase activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding;P:cellular alcohol metabolic process;C:endomembrane system;OBFMPVAO.I.C.G.H.G. unknown;P:biological_process unknown;C:chloroplast;PMFOBAO.I.C.G.H.G. kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
10.099.2188.1At5g42650834273AOS (ALLENE OXIDE SYNTHASE)Encodes a member of the cytochrome p450 CYP74 gene family that functions as an allene oxide synthase. This enzyme catalyzes dehydration of the hydroperoxide to an unstable allene oxide in the JA biosynthetic pathway. It shows a dual catalytic activity, the major one being a 13-AOS but also expressing a 9-AOS activity.O.I.C.G.H.G. (POLYGALACTURONASE INHIBITING PROTEIN 2)Encodes a polygalacturonase inhibiting protein involved in plant defense response. PGIPs inhibit the activity of pectin degrading enzymes such as those produced by fungal pathogens. PGIP2 is induced by fungal infection and methyl jasmonate.O.I.C.G.H.G. serine/threonine protein kinase induced by salicylic acid. mutant plants exhibit a loss of cell expansion and dependence on sugars and salts for seedling growth, affecting the expression and activity of vacuolar invertase.O.I.C.G.H.G.
9.999.1198.3At1g66970843015SVL2 (SHV3-LIKE 2)F:kinase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:anchored to plasma membrane, apoplast, chloroplast, anchored to membrane;BPOMO.I.C.G.H.G.
9.999.114.8At3g07520819940GLR1.4 (GLUTAMATE RECEPTOR 1.4)member of Putative ligand-gated ion channel subunit family. Contains a functional cation - permeable pore domain. Involved in cellular cation homeostasis.O.I.C.G.H.G.
9.899.1231.4At2g31880817746leucine-rich repeat transmembrane protein kinase, putativeEncodes a putative leucine rich repeat transmembrane protein that is expressed in response to Pseudomonas syringae. Expression of SRRLK may be required for silencing via lsiRNAs.O.I.C.G.H.G.
9.899.17.3At5g66890836823disease resistance protein (CC-NBS-LRR class), putativeF:unknown;P:defense response;C:unknown;PMBOFAVO.I.C.G.H.G.
9.799.127.3At4g23220828421kinaseF:kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
9.699.169.1At3g04210819576disease resistance protein (TIR-NBS class), putativeF:transmembrane receptor activity, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, endomembrane system;PBMOO.I.C.G.H.G.
9.699.153.5At5g02940831426-F:unknown;P:unknown;C:chloroplast, chloroplast envelope;POBO.I.C.G.H.G.
9.699.128.7At3g26600822269ARO4 (ARMADILLO REPEAT ONLY 4)Armadillo repeat protein. One of a family of four in Arabidopsis. Expressed in vegetative tissues, anthers and ovules.O.I.C.G.H.G.
9.699.118.8At2g14080815893disease resistance protein (TIR-NBS-LRR class), putativeF:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, endomembrane system;PMOBFAVO.I.C.G.H.G.
9.699.118.7At2g13810815864ALD1 (AGD2-LIKE DEFENSE RESPONSE PROTEIN1)F:transferase activity, transferring nitrogenous groups, pyridoxal phosphate binding, transaminase activity, catalytic activity;P:asparagine catabolic process, biosynthetic process, glutamate catabolic process to oxaloacetate, aspartate transamidation;C:chloroplast;BOAPMFO.I.C.G.H.G.
9.599.180.0At4g01080827902unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;PFO.I.C.G.H.G.
9.499.130.8At4g04540825785protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
9.499.121.4At4g21380827890ARK3 (A. THALIANA RECEPTOR KINASE 3)encodes a putative receptor-like serine/threonine protein kinases that is similar to Brassica self-incompatibility (S) locus. Expressed in root. Shoot expression limited to limited to the root-hypocotyl transition zone and at the base of lateral roots as well as in axillary buds, and pedicels.O.I.C.G.H.G.
9.399.1123.8At1g29395839815COR414-TM1encodes a protein similar to the cold acclimation protein WCOR413 in wheat. Expression is induced by short-term cold-treatment, water deprivation, and abscisic acid treatment. Possibly targeted to thylakoid membrane.O.I.C.G.H.G.
9.399.196.2At5g27280832786zinc finger (DNL type) family proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;MFPOO.I.C.G.H.G.
9.399.145.1At2g16630816164proline-rich family proteinF:unknown;P:unknown;C:endomembrane system;MPBOFVAO.I.C.G.H.G.
9.399.132.5At4g02630828217protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.C.G.H.G. repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G. resistance protein (TIR-NBS-LRR class), putativeF:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAVO.I.C.G.H.G.
9.199.1101.0At4g01070827912GT72B1the glycosyltransferase (UGT72B1) is involved in metabolizing xenobiotica (chloroaniline and chlorophenole). Comparison between wild type and knock-out mutant demonstrates the central role of this gene for metabolizing chloroaniline but significantly less for chlorophenole. The glucosyltransferase preferred UDP-xylose over UDP-glucose indicating its (additional) functioning as a xylosyltransferase in plantaO.I.C.G.H.G. synthase family proteinF:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endomembrane system;BPMOAFO.I.C.G.H.G. kinase family proteinF:protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;PMOBFVO.I.C.G.H.G. proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
9.099.1111.4At3g44860823620FAMT (farnesoic acid carboxyl-O-methyltransferase)Encodes a farnesoic acid carboxyl-O-methyltransferase.O.I.C.G.H.G. (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4)Encodes a mitogen-activated map kinase kinase (there are nine in Arabidopsis) involved in innate immunity. This protein activates MPK3/MPK6 and early-defense genes redundantly with MKK5. In plants with both MKK5 and MKK6 levels reduced by RNAi plants, floral organs do not abscise suggestion a role for both proteins in mediating floral organ abscission.O.I.C.G.H.G.
8.999.072.5At5g65630836689GTE7 (Global transcription factor group E 7)This gene is predicted to encode a bromodomain-containing protein. Plant lines expressing RNAi constructs targeted against GTE7 show some resistance to agrobacterium-mediated root transformation.O.I.C.G.H.G.
8.999.024.2At4g02420828035lectin protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
8.899.0180.5At5g10760830943aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis;C:apoplast;PMFOO.I.C.G.H.G.
8.799.029.0At3g48720824033transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFOO.I.C.G.H.G.

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