CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM133045

Assay name 2787

GSE experiment GSE5685: AtGenExpress: Pathogen Series: Pseudomonas half leaf injection

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
30.2 99.7 55.1 At3g11010 820272 AtRLP34 (Receptor Like Protein 34) F:protein binding, kinase activity;P:signal transduction, defense response;C:cellular_component unknown;PMOBFAV O.I. C.G. H.G.
29.9 99.7 51.7 At1g56150 842068 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO O.I. C.G. H.G.
27.1 99.7 69.4 At2g32680 817828 AtRLP23 (Receptor Like Protein 23) F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAV O.I. C.G. H.G.
26.4 99.7 123.8 At4g23140 828413 CRK6 (CYSTEINE-RICH RLK 6) Arabidopsis thaliana receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307) O.I. C.G. H.G.
25.6 99.7 90.1 At1g68600 843190 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;BPFO O.I. C.G. H.G.
22.9 99.6 19.3 At1g21240 838719 WAK3 (wall associated kinase 3) encodes a wall-associated kinase O.I. C.G. H.G.
22.0 99.6 47.0 At4g04540 825785 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
21.9 99.6 34.6 At3g25010 822092 AtRLP41 (Receptor Like Protein 41) F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAV O.I. C.G. H.G.
19.4 99.6 33.7 At5g59670 836088 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
17.6 99.5 94.7 At1g76960 844031 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
17.6 99.5 19.7 At3g07520 819940 GLR1.4 (GLUTAMATE RECEPTOR 1.4) member of Putative ligand-gated ion channel subunit family. Contains a functional cation - permeable pore domain. Involved in cellular cation homeostasis. O.I. C.G. H.G.
17.1 99.5 18.1 At1g17610 838337 disease resistance protein-related F:transmembrane receptor activity, ATP binding;P:signal transduction, apoptosis, innate immune response;C:intrinsic to membrane, endomembrane system;PBOMF O.I. C.G. H.G.
17.0 99.5 106.4 At5g18470 831965 curculin-like (mannose-binding) lectin family protein F:sugar binding;P:biological_process unknown;C:plant-type cell wall;P O.I. C.G. H.G.
16.5 99.5 208.6 At1g21250 838721 WAK1 (CELL WALL-ASSOCIATED KINASE) cell wall-associated kinase, may function as a signaling receptor of extracellular matrix component. O.I. C.G. H.G.
15.7 99.5 33.3 At3g12830 820465 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO O.I. C.G. H.G.
15.3 99.4 140.0 At2g44210 819029 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;PFB O.I. C.G. H.G.
14.1 99.4 131.5 At1g68520 843181 zinc finger (B-box type) family protein F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;POMF O.I. C.G. H.G.
14.0 99.4 171.6 At4g14400 827085 ACD6 (ACCELERATED CELL DEATH 6) encodes a novel protein with putative ankyrin and transmembrane regions. It is a member of one of the largest uncharacterized gene families in higher plants. The gene is involved in resistance to Pseudomonas syringae. O.I. C.G. H.G.
14.0 99.4 139.2 At5g48380 834892 leucine-rich repeat family protein / protein kinase family protein F:protein binding, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVA O.I. C.G. H.G.
14.0 99.4 24.7 At3g23110 821886 AtRLP37 (Receptor Like Protein 37) F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAV O.I. C.G. H.G.
13.9 99.4 178.7 At1g78020 844137 senescence-associated protein-related F:unknown;P:unknown;C:unknown;P O.I. C.G. H.G.
13.8 99.4 20.2 At1g72240 843556 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
13.6 99.4 39.5 At3g48090 823964 EDS1 (enhanced disease susceptibility 1) Component of R gene-mediated disease resistance in Arabidopsis thaliana with homology to eukaryotic lipases. O.I. C.G. H.G.
13.6 99.4 37.3 At5g60900 836211 RLK1 (RECEPTOR-LIKE PROTEIN KINASE 1) Encodes a receptor-like protein kinase. O.I. C.G. H.G.
13.3 99.4 81.1 At1g30250 839905 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
13.3 99.4 35.4 At3g07650 819956 COL9 (CONSTANS-LIKE 9) This gene belongs to the CO (CONSTANS) gene family. This gene family is divided in three subgroups: groups III, to which COL9 belongs, is characterised by one B-box (supposed to regulate protein-protein interactions) and a second diverged zinc finger. COL9 downregulates expression of CO (CONSTANS) as well as FT and SOC1 which are known regulatory targets of CO. O.I. C.G. H.G.
13.0 99.4 226.7 At1g66970 843015 SVL2 (SHV3-LIKE 2) F:kinase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:anchored to plasma membrane, apoplast, chloroplast, anchored to membrane;BPOM O.I. C.G. H.G.
12.9 99.3 97.8 At3g11660 820338 NHL1 encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression of this gene is induced by cucumber mosaic virus. Localization of the gene product is similar to that of NHL3 (plasma membrane) but it is yet inconclusive. O.I. C.G. H.G.
12.7 99.3 50.7 At3g60540 825225 sec61beta family protein F:protein transporter activity;P:protein transport;C:unknown;MFPO O.I. C.G. H.G.
12.7 99.3 18.7 At3g48080 823963 lipase class 3 family protein / disease resistance protein-related F:lipase activity, triacylglycerol lipase activity, signal transducer activity;P:lipid metabolic process;C:cellular_component unknown;POB O.I. C.G. H.G.
12.6 99.3 66.2 At1g10340 837573 ankyrin repeat family protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOPBFVA O.I. C.G. H.G.
12.5 99.3 63.3 At2g46430 819251 ATCNGC3 (CYCLIC NUCLEOTIDE GATED CHANNEL 3) cyclic nucleotide gated channel (CNGC4), downstream component of the signaling pathways leading to HR/resistance O.I. C.G. H.G.
12.4 99.3 20.2 At3g26230 822224 CYP71B24 putative cytochrome P450 O.I. C.G. H.G.
12.1 99.3 61.2 At2g17040 816209 anac036 (Arabidopsis NAC domain containing protein 36) F:transcription factor activity;P:multicellular organismal development, response to chitin;C:cellular_component unknown;P O.I. C.G. H.G.
12.0 99.3 41.3 At1g68585 843188 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
11.8 99.3 148.8 At1g08450 837365 CRT3 (CALRETICULIN 3) Encodes calreticulin CRT3. O.I. C.G. H.G.
11.7 99.3 124.2 At5g23240 832388 DNAJ heat shock N-terminal domain-containing protein F:unfolded protein binding, heat shock protein binding;P:protein folding;C:chloroplast;BOMPFAV O.I. C.G. H.G.
11.6 99.3 183.0 At3g50480 824212 HR4 (HOMOLOG OF RPW8 4) Homolog of RPW8 O.I. C.G. H.G.
11.1 99.2 56.6 At5g39670 833963 calcium-binding EF hand family protein F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MPFOB O.I. C.G. H.G.
11.1 99.2 27.0 At4g02420 828035 lectin protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
11.0 99.2 79.9 At1g65190 842826 protein kinase family protein F:protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;PMOBFV O.I. C.G. H.G.
11.0 99.2 33.2 At3g60180 825188 uridylate kinase, putative / uridine monophosphate kinase, putative / UMP kinase, putative F:nucleobase, nucleoside, nucleotide kinase activity, uridylate kinase activity, nucleotide kinase activity, ATP binding, phosphotransferase activity, phosphate group as acceptor;P:pyrimidine ribonucleotide metabolic process, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, anaerobic respiration;C:nucleus, cytoplasm;BOMFPA O.I. C.G. H.G.
10.9 99.2 73.6 At3g04210 819576 disease resistance protein (TIR-NBS class), putative F:transmembrane receptor activity, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, endomembrane system;PBMO O.I. C.G. H.G.
10.9 99.2 53.6 At1g21270 838723 WAK2 cytoplasmic serine/threonine protein kinase induced by salicylic acid. mutant plants exhibit a loss of cell expansion and dependence on sugars and salts for seedling growth, affecting the expression and activity of vacuolar invertase. O.I. C.G. H.G.
10.7 99.2 45.2 At5g11060 830973 KNAT4 (KNOTTED1-LIKE HOMEOBOX GENE 4) A member of Class II KN1-like homeodomain transcription factors (together with KNAT3 and KNAT5), with greatest homology to the maize knox1 homeobox protein. Expression regulated by light. Detected in all tissues examined, but most prominent in leaves and young siliques. Transient expression of GFP translational fusion protein suggests bipartite localization in nucleus and cytoplasm. KNAT4 promoter activity showed cell-type specific pattern along longitudinal root axis; GUS expression pattern started at the elongation zone, predominantly in the phloem and pericycle cells, extending to endodermis toward the base of the root. O.I. C.G. H.G.
10.7 99.2 11.7 At5g36930 833662 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAV O.I. C.G. H.G.
10.5 99.2 239.3 At2g31880 817746 leucine-rich repeat transmembrane protein kinase, putative Encodes a putative leucine rich repeat transmembrane protein that is expressed in response to Pseudomonas syringae. Expression of SRRLK may be required for silencing via lsiRNAs. O.I. C.G. H.G.
10.5 99.2 86.8 At3g45860 823729 receptor-like protein kinase, putative F:kinase activity;P:defense response;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
10.3 99.2 30.6 At1g58420 842211 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
10.2 99.2 19.4 At2g14080 815893 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, endomembrane system;PMOBFAV O.I. C.G. H.G.
10.0 99.2 26.2 At1g23840 838995 unknown protein F:unknown;P:unknown;C:endomembrane system;P O.I. C.G. H.G.
9.8 99.1 57.8 At2g41180 818717 sigA-binding protein-related F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
9.8 99.1 16.5 At1g11350 837677 SD1-13 (S-DOMAIN-1 13) F:protein serine/threonine kinase activity, protein kinase activity, kinase activity;P:protein amino acid autophosphorylation;C:plasma membrane;MPOBFVA O.I. C.G. H.G.
9.6 99.1 162.9 At4g14365 827080 zinc finger (C3HC4-type RING finger) family protein / ankyrin repeat family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MOBFPVA O.I. C.G. H.G.
9.6 99.1 58.9 At4g03030 828110 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MPOBVF O.I. C.G. H.G.
9.6 99.1 31.6 At1g73805 843716 calmodulin binding F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
9.5 99.1 264.3 At4g23600 828460 CORI3 (CORONATINE INDUCED 1) Encodes cystine lyase which is expected to be involved in amino acid metabolism, providing the plant with cysteine and the generation of precursors of ethylene biosynthesis. mRNA levels are elevated in response to wounding. O.I. C.G. H.G.
9.5 99.1 222.7 At3g28940 822530 avirulence-responsive protein, putative / avirulence induced gene (AIG) protein, putative F:molecular_function unknown;P:response to bacterium;C:plasma membrane, chloroplast;PFOBA O.I. C.G. H.G.
9.4 99.1 253.0 At3g57260 824893 BGL2 (BETA-1,3-GLUCANASE 2) beta 1,3-glucanase O.I. C.G. H.G.
9.4 99.1 40.6 At5g61520 836273 hexose transporter, putative F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOA O.I. C.G. H.G.
9.3 99.1 65.9 At5g52540 835330 unknown protein F:unknown;P:unknown;C:chloroplast envelope;BOPA O.I. C.G. H.G.
9.2 99.1 38.6 At1g48210 841241 serine/threonine protein kinase, putative F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. C.G. H.G.
9.1 99.1 40.2 At4g08470 826406 MAPKKK10 member of MEKK subfamily O.I. C.G. H.G.
9.1 99.1 20.1 At3g45260 823664 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MOPFB O.I. C.G. H.G.
9.1 99.1 13.8 At4g39890 830148 AtRABH1c (Arabidopsis Rab GTPase homolog H1c) F:protein binding, GTP binding;P:protein transport, small GTPase mediated signal transduction;C:endomembrane system;MOFPBVA O.I. C.G. H.G.
9.1 99.1 13.4 At5g35480 833512 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
9.0 99.1 138.9 At5g10380 830902 RING1 Encodes a RING finger domain protein with E3 ligase activity that is localized to the lipid rafts of the plasma membrane. Expression is increased in response to fungal pathogen. May be involved in regulation of programmed cell death by facilitating degredation of regulation of PDC activators. O.I. C.G. H.G.
9.0 99.1 69.0 At5g02290 831880 NAK Encodes a candidate protein kinase NAK that is similar to the oncogenes met and abl. O.I. C.G. H.G.
8.9 99.0 70.5 At1g55000 841942 peptidoglycan-binding LysM domain-containing protein F:molecular_function unknown;P:cell wall macromolecule catabolic process;C:endomembrane system;MPOB O.I. C.G. H.G.
8.9 99.0 37.9 At1g53230 841756 TCP3 Encodes a member of a recently identified plant transcription factor family that includes Teosinte branched 1, Cycloidea 1, and proliferating cell nuclear antigen (PCNA) factors, PCF1 and 2. Regulated by miR319. Involved in heterchronic regulation of leaf differentiation. O.I. C.G. H.G.
8.8 99.0 57.2 At2g40270 818619 protein kinase family protein F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVA O.I. C.G. H.G.
8.8 99.0 50.3 At1g55910 842041 ZIP11 (ZINC TRANSPORTER 11 PRECURSOR) member of Putative zinc transporter ZIP2 - like family O.I. C.G. H.G.
8.8 99.0 10.2 At4g14610 3770075 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
8.7 99.0 32.9 At5g52190 835295 sugar isomerase (SIS) domain-containing protein F:sugar binding;P:carbohydrate metabolic process;C:unknown;BAOP O.I. C.G. H.G.
8.6 99.0 92.6 At5g27280 832786 zinc finger (DNL type) family protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MFPO O.I. C.G. H.G.
8.6 99.0 19.9 At3g52710 824437 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P O.I. C.G. H.G.
8.6 99.0 19.6 At1g67470 843068 protein kinase family protein F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;PMOBFVA O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
30.2	99.7	55.1	At3g11010	820272	AtRLP34 (Receptor Like Protein 34)	F:protein binding, kinase activity;P:signal transduction, defense response;C:cellular_component unknown;PMOBFAV	O.I.	C.G.	H.G.
29.9	99.7	51.7	At1g56150	842068	auxin-responsive family protein	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO	O.I.	C.G.	H.G.
27.1	99.7	69.4	At2g32680	817828	AtRLP23 (Receptor Like Protein 23)	F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAV	O.I.	C.G.	H.G.
26.4	99.7	123.8	At4g23140	828413	CRK6 (CYSTEINE-RICH RLK 6)	Arabidopsis thaliana receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307)	O.I.	C.G.	H.G.
25.6	99.7	90.1	At1g68600	843190	unknown protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;BPFO	O.I.	C.G.	H.G.
22.9	99.6	19.3	At1g21240	838719	WAK3 (wall associated kinase 3)	encodes a wall-associated kinase	O.I.	C.G.	H.G.
22.0	99.6	47.0	At4g04540	825785	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
21.9	99.6	34.6	At3g25010	822092	AtRLP41 (Receptor Like Protein 41)	F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAV	O.I.	C.G.	H.G.
19.4	99.6	33.7	At5g59670	836088	leucine-rich repeat protein kinase, putative	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
17.6	99.5	94.7	At1g76960	844031	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
17.6	99.5	19.7	At3g07520	819940	GLR1.4 (GLUTAMATE RECEPTOR 1.4)	member of Putative ligand-gated ion channel subunit family. Contains a functional cation - permeable pore domain. Involved in cellular cation homeostasis.	O.I.	C.G.	H.G.
17.1	99.5	18.1	At1g17610	838337	disease resistance protein-related	F:transmembrane receptor activity, ATP binding;P:signal transduction, apoptosis, innate immune response;C:intrinsic to membrane, endomembrane system;PBOMF	O.I.	C.G.	H.G.
17.0	99.5	106.4	At5g18470	831965	curculin-like (mannose-binding) lectin family protein	F:sugar binding;P:biological_process unknown;C:plant-type cell wall;P	O.I.	C.G.	H.G.
16.5	99.5	208.6	At1g21250	838721	WAK1 (CELL WALL-ASSOCIATED KINASE)	cell wall-associated kinase, may function as a signaling receptor of extracellular matrix component.	O.I.	C.G.	H.G.
15.7	99.5	33.3	At3g12830	820465	auxin-responsive family protein	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO	O.I.	C.G.	H.G.
15.3	99.4	140.0	At2g44210	819029	unknown protein	F:unknown;P:biological_process unknown;C:endomembrane system;PFB	O.I.	C.G.	H.G.
14.1	99.4	131.5	At1g68520	843181	zinc finger (B-box type) family protein	F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;POMF	O.I.	C.G.	H.G.
14.0	99.4	171.6	At4g14400	827085	ACD6 (ACCELERATED CELL DEATH 6)	encodes a novel protein with putative ankyrin and transmembrane regions. It is a member of one of the largest uncharacterized gene families in higher plants. The gene is involved in resistance to Pseudomonas syringae.	O.I.	C.G.	H.G.
14.0	99.4	139.2	At5g48380	834892	leucine-rich repeat family protein / protein kinase family protein	F:protein binding, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVA	O.I.	C.G.	H.G.
14.0	99.4	24.7	At3g23110	821886	AtRLP37 (Receptor Like Protein 37)	F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAV	O.I.	C.G.	H.G.
13.9	99.4	178.7	At1g78020	844137	senescence-associated protein-related	F:unknown;P:unknown;C:unknown;P	O.I.	C.G.	H.G.
13.8	99.4	20.2	At1g72240	843556	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
13.6	99.4	39.5	At3g48090	823964	EDS1 (enhanced disease susceptibility 1)	Component of R gene-mediated disease resistance in Arabidopsis thaliana with homology to eukaryotic lipases.	O.I.	C.G.	H.G.
13.6	99.4	37.3	At5g60900	836211	RLK1 (RECEPTOR-LIKE PROTEIN KINASE 1)	Encodes a receptor-like protein kinase.	O.I.	C.G.	H.G.
13.3	99.4	81.1	At1g30250	839905	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
13.3	99.4	35.4	At3g07650	819956	COL9 (CONSTANS-LIKE 9)	This gene belongs to the CO (CONSTANS) gene family. This gene family is divided in three subgroups: groups III, to which COL9 belongs, is characterised by one B-box (supposed to regulate protein-protein interactions) and a second diverged zinc finger. COL9 downregulates expression of CO (CONSTANS) as well as FT and SOC1 which are known regulatory targets of CO.	O.I.	C.G.	H.G.
13.0	99.4	226.7	At1g66970	843015	SVL2 (SHV3-LIKE 2)	F:kinase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:anchored to plasma membrane, apoplast, chloroplast, anchored to membrane;BPOM	O.I.	C.G.	H.G.
12.9	99.3	97.8	At3g11660	820338	NHL1	encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression of this gene is induced by cucumber mosaic virus. Localization of the gene product is similar to that of NHL3 (plasma membrane) but it is yet inconclusive.	O.I.	C.G.	H.G.
12.7	99.3	50.7	At3g60540	825225	sec61beta family protein	F:protein transporter activity;P:protein transport;C:unknown;MFPO	O.I.	C.G.	H.G.
12.7	99.3	18.7	At3g48080	823963	lipase class 3 family protein / disease resistance protein-related	F:lipase activity, triacylglycerol lipase activity, signal transducer activity;P:lipid metabolic process;C:cellular_component unknown;POB	O.I.	C.G.	H.G.
12.6	99.3	66.2	At1g10340	837573	ankyrin repeat family protein	F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOPBFVA	O.I.	C.G.	H.G.
12.5	99.3	63.3	At2g46430	819251	ATCNGC3 (CYCLIC NUCLEOTIDE GATED CHANNEL 3)	cyclic nucleotide gated channel (CNGC4), downstream component of the signaling pathways leading to HR/resistance	O.I.	C.G.	H.G.
12.4	99.3	20.2	At3g26230	822224	CYP71B24	putative cytochrome P450	O.I.	C.G.	H.G.
12.1	99.3	61.2	At2g17040	816209	anac036 (Arabidopsis NAC domain containing protein 36)	F:transcription factor activity;P:multicellular organismal development, response to chitin;C:cellular_component unknown;P	O.I.	C.G.	H.G.
12.0	99.3	41.3	At1g68585	843188	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
11.8	99.3	148.8	At1g08450	837365	CRT3 (CALRETICULIN 3)	Encodes calreticulin CRT3.	O.I.	C.G.	H.G.
11.7	99.3	124.2	At5g23240	832388	DNAJ heat shock N-terminal domain-containing protein	F:unfolded protein binding, heat shock protein binding;P:protein folding;C:chloroplast;BOMPFAV	O.I.	C.G.	H.G.
11.6	99.3	183.0	At3g50480	824212	HR4 (HOMOLOG OF RPW8 4)	Homolog of RPW8	O.I.	C.G.	H.G.
11.1	99.2	56.6	At5g39670	833963	calcium-binding EF hand family protein	F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MPFOB	O.I.	C.G.	H.G.
11.1	99.2	27.0	At4g02420	828035	lectin protein kinase, putative	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
11.0	99.2	79.9	At1g65190	842826	protein kinase family protein	F:protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;PMOBFV	O.I.	C.G.	H.G.
11.0	99.2	33.2	At3g60180	825188	uridylate kinase, putative / uridine monophosphate kinase, putative / UMP kinase, putative	F:nucleobase, nucleoside, nucleotide kinase activity, uridylate kinase activity, nucleotide kinase activity, ATP binding, phosphotransferase activity, phosphate group as acceptor;P:pyrimidine ribonucleotide metabolic process, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, anaerobic respiration;C:nucleus, cytoplasm;BOMFPA	O.I.	C.G.	H.G.
10.9	99.2	73.6	At3g04210	819576	disease resistance protein (TIR-NBS class), putative	F:transmembrane receptor activity, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, endomembrane system;PBMO	O.I.	C.G.	H.G.
10.9	99.2	53.6	At1g21270	838723	WAK2	cytoplasmic serine/threonine protein kinase induced by salicylic acid. mutant plants exhibit a loss of cell expansion and dependence on sugars and salts for seedling growth, affecting the expression and activity of vacuolar invertase.	O.I.	C.G.	H.G.
10.7	99.2	45.2	At5g11060	830973	KNAT4 (KNOTTED1-LIKE HOMEOBOX GENE 4)	A member of Class II KN1-like homeodomain transcription factors (together with KNAT3 and KNAT5), with greatest homology to the maize knox1 homeobox protein. Expression regulated by light. Detected in all tissues examined, but most prominent in leaves and young siliques. Transient expression of GFP translational fusion protein suggests bipartite localization in nucleus and cytoplasm. KNAT4 promoter activity showed cell-type specific pattern along longitudinal root axis; GUS expression pattern started at the elongation zone, predominantly in the phloem and pericycle cells, extending to endodermis toward the base of the root.	O.I.	C.G.	H.G.
10.7	99.2	11.7	At5g36930	833662	disease resistance protein (TIR-NBS-LRR class), putative	F:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAV	O.I.	C.G.	H.G.
10.5	99.2	239.3	At2g31880	817746	leucine-rich repeat transmembrane protein kinase, putative	Encodes a putative leucine rich repeat transmembrane protein that is expressed in response to Pseudomonas syringae. Expression of SRRLK may be required for silencing via lsiRNAs.	O.I.	C.G.	H.G.
10.5	99.2	86.8	At3g45860	823729	receptor-like protein kinase, putative	F:kinase activity;P:defense response;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
10.3	99.2	30.6	At1g58420	842211	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
10.2	99.2	19.4	At2g14080	815893	disease resistance protein (TIR-NBS-LRR class), putative	F:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, endomembrane system;PMOBFAV	O.I.	C.G.	H.G.
10.0	99.2	26.2	At1g23840	838995	unknown protein	F:unknown;P:unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
9.8	99.1	57.8	At2g41180	818717	sigA-binding protein-related	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
9.8	99.1	16.5	At1g11350	837677	SD1-13 (S-DOMAIN-1 13)	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity;P:protein amino acid autophosphorylation;C:plasma membrane;MPOBFVA	O.I.	C.G.	H.G.
9.6	99.1	162.9	At4g14365	827080	zinc finger (C3HC4-type RING finger) family protein / ankyrin repeat family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;MOBFPVA	O.I.	C.G.	H.G.
9.6	99.1	58.9	At4g03030	828110	kelch repeat-containing F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MPOBVF	O.I.	C.G.	H.G.
9.6	99.1	31.6	At1g73805	843716	calmodulin binding	F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
9.5	99.1	264.3	At4g23600	828460	CORI3 (CORONATINE INDUCED 1)	Encodes cystine lyase which is expected to be involved in amino acid metabolism, providing the plant with cysteine and the generation of precursors of ethylene biosynthesis. mRNA levels are elevated in response to wounding.	O.I.	C.G.	H.G.
9.5	99.1	222.7	At3g28940	822530	avirulence-responsive protein, putative / avirulence induced gene (AIG) protein, putative	F:molecular_function unknown;P:response to bacterium;C:plasma membrane, chloroplast;PFOBA	O.I.	C.G.	H.G.
9.4	99.1	253.0	At3g57260	824893	BGL2 (BETA-1,3-GLUCANASE 2)	beta 1,3-glucanase	O.I.	C.G.	H.G.
9.4	99.1	40.6	At5g61520	836273	hexose transporter, putative	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOA	O.I.	C.G.	H.G.
9.3	99.1	65.9	At5g52540	835330	unknown protein	F:unknown;P:unknown;C:chloroplast envelope;BOPA	O.I.	C.G.	H.G.
9.2	99.1	38.6	At1g48210	841241	serine/threonine protein kinase, putative	F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA	O.I.	C.G.	H.G.
9.1	99.1	40.2	At4g08470	826406	MAPKKK10	member of MEKK subfamily	O.I.	C.G.	H.G.
9.1	99.1	20.1	At3g45260	823664	zinc finger (C2H2 type) family protein	F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MOPFB	O.I.	C.G.	H.G.
9.1	99.1	13.8	At4g39890	830148	AtRABH1c (Arabidopsis Rab GTPase homolog H1c)	F:protein binding, GTP binding;P:protein transport, small GTPase mediated signal transduction;C:endomembrane system;MOFPBVA	O.I.	C.G.	H.G.
9.1	99.1	13.4	At5g35480	833512	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
9.0	99.1	138.9	At5g10380	830902	RING1	Encodes a RING finger domain protein with E3 ligase activity that is localized to the lipid rafts of the plasma membrane. Expression is increased in response to fungal pathogen. May be involved in regulation of programmed cell death by facilitating degredation of regulation of PDC activators.	O.I.	C.G.	H.G.
9.0	99.1	69.0	At5g02290	831880	NAK	Encodes a candidate protein kinase NAK that is similar to the oncogenes met and abl.	O.I.	C.G.	H.G.
8.9	99.0	70.5	At1g55000	841942	peptidoglycan-binding LysM domain-containing protein	F:molecular_function unknown;P:cell wall macromolecule catabolic process;C:endomembrane system;MPOB	O.I.	C.G.	H.G.
8.9	99.0	37.9	At1g53230	841756	TCP3	Encodes a member of a recently identified plant transcription factor family that includes Teosinte branched 1, Cycloidea 1, and proliferating cell nuclear antigen (PCNA) factors, PCF1 and 2. Regulated by miR319. Involved in heterchronic regulation of leaf differentiation.	O.I.	C.G.	H.G.
8.8	99.0	57.2	At2g40270	818619	protein kinase family protein	F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVA	O.I.	C.G.	H.G.
8.8	99.0	50.3	At1g55910	842041	ZIP11 (ZINC TRANSPORTER 11 PRECURSOR)	member of Putative zinc transporter ZIP2 - like family	O.I.	C.G.	H.G.
8.8	99.0	10.2	At4g14610	3770075	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
8.7	99.0	32.9	At5g52190	835295	sugar isomerase (SIS) domain-containing protein	F:sugar binding;P:carbohydrate metabolic process;C:unknown;BAOP	O.I.	C.G.	H.G.
8.6	99.0	92.6	At5g27280	832786	zinc finger (DNL type) family protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MFPO	O.I.	C.G.	H.G.
8.6	99.0	19.9	At3g52710	824437	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P	O.I.	C.G.	H.G.
8.6	99.0	19.6	At1g67470	843068	protein kinase family protein	F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;PMOBFVA	O.I.	C.G.	H.G.

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GSM ID	GSM133045
Assay name	2787
GSE experiment	GSE5685: AtGenExpress: Pathogen Series: Pseudomonas half leaf injection

Microarray experiments to specifically-expressed genes

GSM ID GSM133045 Assay name 2787 GSE experiment GSE5685: AtGenExpress: Pathogen Series: Pseudomonas half leaf injection

GSM ID GSM133045

Assay name 2787

GSE experiment GSE5685: AtGenExpress: Pathogen Series: Pseudomonas half leaf injection