Microarray experiments to specifically-expressed genes

GSM ID GSM131831
Assay name Quick_A27_0-0hr_Rep2_ATH1
GSE experiment GSE5639: Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Controls)

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
25.399.633.7At1g06100837119fatty acid desaturase family proteinF:oxidoreductase activity;P:lipid metabolic process;C:unknown;BOMFPVO.I.C.G.H.G.
24.599.6153.1At2g33850817954unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OMFPBAVO.I.C.G.H.G.
24.399.68.1At1g27940839687PGP13 (P-GLYCOPROTEIN 13)F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:integral to membrane;BOMAFPVO.I.C.G.H.G.
23.899.637.2At3g59670825136unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
23.899.625.5At5g04660830343CYP77A4encodes a protein with cytochrome P450 domainO.I.C.G.H.G.
21.999.698.9At1g25450839131KCS5 (3-KETOACYL-COA SYNTHASE 5)Encodes KCS5, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).O.I.C.G.H.G.
20.099.6108.7At5g12110831084elongation factor 1B alpha-subunit 1 (eEF1Balpha1)F:translation elongation factor activity;P:translational elongation;C:eukaryotic translation elongation factor 1 complex;MOPFO.I.C.G.H.G.
19.999.614.2At3g61840825357unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
19.399.614.4At2g35700818139ERF38 (ERF FAMILY PROTEIN 38)encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. Thought to be involved in secondary cell wall metabolism.O.I.C.G.H.G.
19.099.538.9At4g02850828160phenazine biosynthesis PhzC/PhzF family proteinF:catalytic activity;P:biosynthetic process;C:endomembrane system;BOMFPAO.I.C.G.H.G.
17.499.546.3At4g16140827300proline-rich family proteinF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;MPFOBVAO.I.C.G.H.G.
17.199.540.2At4g14770827132TCX2 (TESMIN/TSO1-LIKE CXC 2)F:transcription factor activity;P:regulation of transcription;C:chloroplast;OMPFBO.I.C.G.H.G.
16.399.517.7At1g34245840324-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
16.299.515.5At5g47380834785unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBOO.I.C.G.H.G.
15.899.519.1At3g01140821209MYB106 (myb domain protein 106)Encodes a putative transcription factor that is a member of the MYB family. Loss of function mutations show an increased number of branchpoints in leaf trichomes suggesting a role in negative regulation of trichome branching.O.I.C.G.H.G.
15.399.424.3At5g46690834712bHLH071 (beta HLH protein 71)F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFOMO.I.C.G.H.G.
14.099.443.8At4g28780828999GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
13.899.414.6At3g57600824929AP2 domain-containing transcription factor, putativeencodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought.O.I.C.G.H.G.
13.699.421.9At4g38950830050kinesin motor family proteinF:microtubule motor activity, ATP binding;P:microtubule-based process, microtubule-based movement;C:microtubule associated complex;MOPFO.I.C.G.H.G.
13.499.452.2At5g65410836666HB25 (HOMEOBOX PROTEIN 25)Encodes ZFHD2, a member of the zinc finger homeodomain transcriptional factor family.O.I.C.G.H.G.
13.299.416.1At3g52550824421-F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFPVBO.I.C.G.H.G.
13.199.462.0At3g51870824350binding / transporterF:transporter activity, binding;P:transport, response to nematode;C:mitochondrial inner membrane, chloroplast, chloroplast envelope;MFPOVO.I.C.G.H.G.
13.099.427.9At1g11600837704CYP77B1member of CYP77BO.I.C.G.H.G.
13.099.420.0At1g74890843828ARR15 (RESPONSE REGULATOR 15)Encodes a nuclear response regulator that acts as a negative regulator in cytokinin-mediated signal transduction. Transcript accumulates in leaves and roots in response to cytokinin treatment.O.I.C.G.H.G.
12.899.314.7At1g18090838389exonuclease, putativeF:DNA binding, catalytic activity, nuclease activity;P:DNA repair;C:cellular_component unknown;MOFAPBVO.I.C.G.H.G.
12.699.343.9At1g65450842857transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO.I.C.G.H.G.
12.499.3112.1At1g06000837109UDP-glucoronosyl/UDP-glucosyl transferase family proteinencodes a flavonol-7-O-rhamnosyltransferase involved in the formation of rhamnosylated flavonolsO.I.C.G.H.G.
12.099.331.8At1g23205838929invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
11.999.312.5At1g49620841386ICK5Kip-related protein (KRP) gene, encodes CDK (cyclin-dependent kinase) inhibitor (CKI), negative regulator of cell division. A member of seven KRP genes found in Arabidopsis thaliana. Differential expression patterns for distinct KRPs were revealed by in situ hybridization. Binds to D type cyclins and may inhibit cell cycle.O.I.C.G.H.G.
11.999.39.2At3g27920822415ATMYB0 (MYB DOMAIN PROTEIN 0)Encodes a Myb-like protein that is required for induction of trichome development.O.I.C.G.H.G.
11.199.228.8At5g05990830486mitochondrial glycoprotein family protein / MAM33 family proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion, mitochondrial matrix;PFOMO.I.C.G.H.G.
11.099.241.0At1g60590842353polygalacturonase, putative / pectinase, putativeF:polygalacturonase activity;P:carbohydrate metabolic process;C:unknown;FPBMOVAO.I.C.G.H.G.
10.899.237.4At1g09900837522pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:membrane;POMFBAO.I.C.G.H.G.
10.799.240.5At1g650608428144CL3encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. mRNA levels are not induced in response to wounding or to fungal infection by P. parasitica. mRNA is expressed in flowers, to a lesser degree in mature leaves and siliques and marginally in seedling roots and bolting stems of mature plants. The catalytic efficiency was in the following (descending) order: p-coumaric acid, caffeic acid, ferulic acid, cinnamic acid and 5-OH-ferulic acid. At4CL3 was unable to use sinapic acid as substrate.O.I.C.G.H.G.
10.799.212.5At3g49660824128transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:G-protein coupled receptor protein signaling pathway;C:chloroplast, heterotrimeric G-protein complex;MFOPBAVO.I.C.G.H.G.
10.699.234.3At5g50915835164basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:response to gibberellin stimulus;C:nucleus;PFMO.I.C.G.H.G.
10.699.211.4At5g53210835402SPCH (SPEECHLESS)Encodes a basic helix-loop-helix (bHLH) transcription factor that is necessary and sufficient for the asymmetric divisions that establish the stomatal lineage in Arabidopsis thaliana. Expression of SPCH in young epidermal cells allows these cells to make asymmetric divisions. SPCH is a substrate of a kinase MPK3 and MPK6.O.I.C.G.H.G.
10.499.210.4At4g28160828931hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:response to gibberellin stimulus;C:endomembrane system;PO.I.C.G.H.G.
10.399.249.5At3g01550821114PPT2 (PHOSPHOENOLPYRUVATE (PEP)/PHOSPHATE TRANSLOCATOR 2)F:antiporter activity, triose-phosphate transmembrane transporter activity;P:triose phosphate transport, transport;C:integral to membrane, chloroplast, membrane;PMFOBAO.I.C.G.H.G.
10.399.27.2At5g15900831447unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
10.199.213.2At3g55710824737UDP-glucoronosyl/UDP-glucosyl transferase family proteinF:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:endomembrane system;PMVBOFO.I.C.G.H.G.
10.099.210.7At3g55160824682-F:unknown;P:unknown;C:unknown;MFOPO.I.C.G.H.G.
10.099.210.2At2g45900819198unknown proteinF:molecular_function unknown;P:response to gibberellin stimulus;C:cellular_component unknown;POMFBO.I.C.G.H.G.
9.999.114.8At3g58070824976GIS (GLABROUS INFLORESCENCE STEMS)Putative transcription factor, contains C2H2 domain, regulates aspects of shoot maturation in Arabidopsis thaliana. GIS loss-of-function mutations affect the epidermal differentiation of inflorescence organs, causing a premature decrease in trichome production on successive leaves, stem internodes, and branches. Overexpression has the opposite effect on trichome initiation and causes other heterochronic phenotypes, affecting flowering and juvenileľadult leaf transition and inducing the formation of rosette leaves on inflorescence stems.O.I.C.G.H.G.
9.699.174.7At3g5749082491640S ribosomal protein S2 (RPS2D)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, ribosome, intracellular, membrane;BOMAFPO.I.C.G.H.G.
9.699.124.6At5g54530835541unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
9.599.118.1At4g24540828556AGL24 (AGAMOUS-LIKE 24)Encodes a MADS-box protein involved in flowering. Regulates the expression of SOC1 and is also upregulated by SOC1. Binds with IMK3 kinase domain. Phosphorylated by IMK3; likely to be a target for IMK3 kinase domain.O.I.C.G.H.G.
9.499.179.4At2g27840817331HDT4Belongs to the plant specific HD2 type proteins; similar to nucleolar Zea mays histone deacetylase; HD2-p39O.I.C.G.H.G.
9.399.16.4At4g03270828000CYCD6F:cyclin-dependent protein kinase activity;P:regulation of cell cycle;C:nucleus;MPOFVO.I.C.G.H.G.
9.299.158.6At3g46940823847deoxyuridine 5'-triphosphate nucleotidohydrolase familyF:hydrolase activity, dUTP diphosphatase activity;P:2'-deoxyribonucleotide metabolic process, dUTP metabolic process;C:cellular_component unknown;BOVMFPAO.I.C.G.H.G.
9.299.112.0At2g19640816483ASHR2 (ASH1-RELATED PROTEIN 2)F:molecular_function unknown;P:biological_process unknown;C:unknown;MFOPVO.I.C.G.H.G.
9.199.1141.6At2g21140816649ATPRP2 (PROLINE-RICH PROTEIN 2)Proline-rich protein expressed in expanding leaves, stems, flowers, and siliques.O.I.C.G.H.G.
9.199.137.2At5g57280835833methyltransferaseF:methyltransferase activity;P:metabolic process;C:unknown;BOMFPAO.I.C.G.H.G.
9.199.116.5At1g70550843392unknown proteinF:unknown;P:biological_process unknown;C:unknown;PFBO.I.C.G.H.G.
9.199.19.3At4g13410826972ATCSLA15encodes a gene similar to cellulose synthaseO.I.C.G.H.G.
9.099.146.0At5g01015831731unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
9.099.116.6At4g22560828352unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PFO.I.C.G.H.G.
9.099.16.2At2g25820817124transcription factorencodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.O.I.C.G.H.G.
8.799.026.0At5g41880834193POLA3F:DNA primase activity;P:DNA replication, synthesis of RNA primer, DNA replication;C:unknown;MFOAPO.I.C.G.H.G.
8.799.022.6At1g12020837754unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;POO.I.C.G.H.G.
8.799.016.8At5g67200836855leucine-rich repeat transmembrane protein kinase, putativeF:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;PMOBFVAO.I.C.G.H.G.
8.699.038.7At4g28100828926unknown proteinF:molecular_function unknown;P:biological_process unknown;C:anchored to plasma membrane, anchored to membrane;PO.I.C.G.H.G.



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