CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM131815

Assay name Quick_A56_3-2hr_Rep3_ATH1

GSE experiment GSE5638: Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 3: Ambient CO2 and Low Light)

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
32.2 99.7 38.0 At1g06100 837119 fatty acid desaturase family protein F:oxidoreductase activity;P:lipid metabolic process;C:unknown;BOMFPV O.I. C.G. H.G.
30.4 99.7 17.5 At3g61840 825357 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
27.1 99.7 161.1 At2g33850 817954 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OMFPBAV O.I. C.G. H.G.
19.8 99.6 54.9 At1g65450 842857 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PF O.I. C.G. H.G.
18.3 99.5 50.0 At4g28780 828999 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM O.I. C.G. H.G.
18.0 99.5 54.4 At2g28210 817367 ATACA2 (ALPHA CARBONIC ANHYDRASE 2) F:carbonate dehydratase activity, zinc ion binding;P:response to carbon dioxide, one-carbon compound metabolic process;C:cellular_component unknown;MBPOFV O.I. C.G. H.G.
17.7 99.5 14.8 At5g53210 835402 SPCH (SPEECHLESS) Encodes a basic helix-loop-helix (bHLH) transcription factor that is necessary and sufficient for the asymmetric divisions that establish the stomatal lineage in Arabidopsis thaliana. Expression of SPCH in young epidermal cells allows these cells to make asymmetric divisions. SPCH is a substrate of a kinase MPK3 and MPK6. O.I. C.G. H.G.
17.1 99.5 18.2 At1g34245 840324 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
16.8 99.5 19.3 At4g16750 827379 DRE-binding transcription factor, putative encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. O.I. C.G. H.G.
16.6 99.5 39.7 At4g14770 827132 TCX2 (TESMIN/TSO1-LIKE CXC 2) F:transcription factor activity;P:regulation of transcription;C:chloroplast;OMPFB O.I. C.G. H.G.
16.6 99.5 13.2 At4g28160 828931 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:response to gibberellin stimulus;C:endomembrane system;P O.I. C.G. H.G.
15.3 99.4 15.0 At5g47380 834785 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBO O.I. C.G. H.G.
15.1 99.4 82.1 At1g25450 839131 KCS5 (3-KETOACYL-COA SYNTHASE 5) Encodes KCS5, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). O.I. C.G. H.G.
14.6 99.4 19.9 At5g04660 830343 CYP77A4 encodes a protein with cytochrome P450 domain O.I. C.G. H.G.
14.0 99.4 51.7 At1g69200 843251 kinase F:kinase activity;P:acetate fermentation, sucrose biosynthetic process, sucrose catabolic process, using beta-fructofuranosidase;C:nucleoid;BOPAMF O.I. C.G. H.G.
13.9 99.4 11.6 At5g60880 836209 unknown protein F:unknown;P:unknown;C:cellular_component unknown;OPMF O.I. C.G. H.G.
13.9 99.4 9.3 At2g26520 817193 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB O.I. C.G. H.G.
13.6 99.4 7.8 At4g03270 828000 CYCD6 F:cyclin-dependent protein kinase activity;P:regulation of cell cycle;C:nucleus;MPOFV O.I. C.G. H.G.
13.2 99.4 14.2 At3g57600 824929 AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought. O.I. C.G. H.G.
13.0 99.4 83.8 At2g25060 817044 plastocyanin-like domain-containing protein F:electron carrier activity, copper ion binding;P:unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;P O.I. C.G. H.G.
12.8 99.3 61.4 At3g51870 824350 binding / transporter F:transporter activity, binding;P:transport, response to nematode;C:mitochondrial inner membrane, chloroplast, chloroplast envelope;MFPOV O.I. C.G. H.G.
12.7 99.3 19.7 At1g74890 843828 ARR15 (RESPONSE REGULATOR 15) Encodes a nuclear response regulator that acts as a negative regulator in cytokinin-mediated signal transduction. Transcript accumulates in leaves and roots in response to cytokinin treatment. O.I. C.G. H.G.
12.7 99.3 14.9 At1g65445 842856 transferase-related F:transferase activity, transferring acyl groups other than amino-acyl groups;P:biological_process unknown;C:cellular_component unknown;PF O.I. C.G. H.G.
12.1 99.3 21.7 At5g46690 834712 bHLH071 (beta HLH protein 71) F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFOM O.I. C.G. H.G.
12.1 99.3 20.7 At5g40330 834031 MYB23 (MYB DOMAIN PROTEIN 23) Encodes a MYB gene that, when overexpressed ectopically, can induce ectopic trichome formation. It is a member of subgroup 15, together with WER and GL1. Members of this subgroup share a conserved motif of 19 amino acids in the putative transcription activation domain at the C-terminal end. The gene is expressed in leaves, stems, flowers, seeds and roots and quite strongly in trichomes. There is partial functional redundancy between ATMYB23 and GL1. The two proteins are functionally equivalent with respect to the regulation of trichome initiation but not with respect to trichome branching - which is controlled by MYB23 and not GL1. O.I. C.G. H.G.
12.1 99.3 15.4 At3g52550 824421 - F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFPVB O.I. C.G. H.G.
12.0 99.3 43.2 At3g11600 820333 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
12.0 99.3 38.4 At4g16140 827300 proline-rich family protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;MPFOBVA O.I. C.G. H.G.
12.0 99.3 12.6 At5g19170 832037 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFB O.I. C.G. H.G.
11.6 99.3 67.9 At3g06730 819858 thioredoxin family protein F:unknown;P:cell redox homeostasis;C:thylakoid, chloroplast, nucleoid;BOMPFA O.I. C.G. H.G.
11.6 99.3 11.1 At2g35700 818139 ERF38 (ERF FAMILY PROTEIN 38) encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. Thought to be involved in secondary cell wall metabolism. O.I. C.G. H.G.
11.6 99.3 5.6 At1g27940 839687 PGP13 (P-GLYCOPROTEIN 13) F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:integral to membrane;BOMAFPV O.I. C.G. H.G.
11.4 99.3 18.6 At1g80080 844348 TMM (TOO MANY MOUTHS) Encodes a transmembrane leucine-repeat containing receptor-like protein that is expressed in proliferative postprotodermal cells. Recessive mutation leads to disruption of asymmetric cell division during stomata development. O.I. C.G. H.G.
11.3 99.3 158.1 At2g21140 816649 ATPRP2 (PROLINE-RICH PROTEIN 2) Proline-rich protein expressed in expanding leaves, stems, flowers, and siliques. O.I. C.G. H.G.
11.3 99.3 16.3 At1g15570 838127 CYCA2 A2-type cyclin. Negatively regulates endocycles and acts as a key regulator of ploidy levels in Arabidopsis endoreduplication. Interacts physically with CDKA;1. Expressed preferentially in trichomes and young developing tissues. O.I. C.G. H.G.
11.2 99.2 5.7 At3g19085 821443 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
10.9 99.2 37.6 At1g09900 837522 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:membrane;POMFBA O.I. C.G. H.G.
10.8 99.2 51.6 At5g08610 830762 DEAD box RNA helicase (RH26) F:helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity;P:unknown;C:chloroplast;BOMFPAV O.I. C.G. H.G.
10.7 99.2 72.6 At5g64620 836583 C/VIF2 (CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 2) Plant cell wall (CWI) and vacuolar invertases (VI) play important roles in carbohydrate metabolism, stress responses and sugar signaling. O.I. C.G. H.G.
10.7 99.2 46.8 At2g31890 817747 RAP Protein contains putative RNA binding domain. Expressed in response to Pseudomonas syringae infection. Resistance requires silencing of AtRAP suggesting it functions as a negative regulator of plant disease resistance. O.I. C.G. H.G.
10.7 99.2 37.8 At2g41940 818794 ZFP8 (ZINC FINGER PROTEIN 8) Encodes a zinc finger protein containing only a single zinc finger. O.I. C.G. H.G.
10.7 99.2 36.3 At4g34250 829574 KCS16 (3-KETOACYL-COA SYNTHASE 16) Encodes KCS16, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). O.I. C.G. H.G.
10.6 99.2 29.1 At4g02850 828160 phenazine biosynthesis PhzC/PhzF family protein F:catalytic activity;P:biosynthetic process;C:endomembrane system;BOMFPA O.I. C.G. H.G.
10.6 99.2 17.8 At5g51910 835266 TCP family transcription factor, putative F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;P O.I. C.G. H.G.
10.5 99.2 51.7 At2g35020 818066 UTP--glucose-1-phosphate uridylyltransferase family protein F:nucleotidyltransferase activity;P:metabolic process;C:cellular_component unknown;MFOBP O.I. C.G. H.G.
10.4 99.2 49.4 At3g59010 825070 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMO O.I. C.G. H.G.
10.3 99.2 24.6 At1g12020 837754 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PO O.I. C.G. H.G.
10.3 99.2 9.3 At2g37390 818315 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;PBMF O.I. C.G. H.G.
10.1 99.2 25.2 At5g54530 835541 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
10.0 99.2 43.5 At2g34640 818029 PTAC12 (PLASTID TRANSCRIPTIONALLY ACTIVE12) Present in transcriptionally active plastid chromosomes. Involved in plastid gene expression. O.I. C.G. H.G.
10.0 99.2 37.4 At5g57180 835824 CIA2 (CHLOROPLAST IMPORT APPARATUS 2) Transcription regulator responsible for specific upregulation of the translocon genes atToc33 and atToc75 in leaves. Involved in protein import into chloroplast. O.I. C.G. H.G.
10.0 99.2 35.5 At5g23070 832371 thymidine kinase, putative F:thymidine kinase activity, ATP binding;P:pyrimidine deoxyribonucleoside interconversion, anaerobic respiration;C:unknown;BOVMPAF O.I. C.G. H.G.
9.9 99.1 22.7 At2g24120 816946 SCA3 (SCABRA 3) F:DNA-directed RNA polymerase activity, DNA binding;P:transcription;C:mitochondrion;OFPMVB O.I. C.G. H.G.
9.9 99.1 22.2 At4g20030 827748 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:nucleus;MPFOBA O.I. C.G. H.G.
9.8 99.1 129.5 At3g16670 820919 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:endomembrane system;P O.I. C.G. H.G.
9.8 99.1 57.5 At5g10920 830959 argininosuccinate lyase, putative / arginosuccinase, putative F:argininosuccinate lyase activity, catalytic activity;P:arginine biosynthetic process via ornithine, arginine biosynthetic process;C:chloroplast, chloroplast stroma;BOAMFP O.I. C.G. H.G.
9.7 99.1 18.5 At1g60230 842318 radical SAM domain-containing protein F:iron-sulfur cluster binding, catalytic activity, RNA methyltransferase activity;P:rRNA processing;C:cytoplasm;BOPVA O.I. C.G. H.G.
9.7 99.1 9.7 At4g30680 829191 MA3 domain-containing protein F:translation initiation factor activity;P:biological_process unknown;C:unknown;MPOFB O.I. C.G. H.G.
9.6 99.1 42.8 At3g15680 820811 zinc finger (Ran-binding) family protein F:binding, zinc ion binding;P:biological_process unknown;C:intracellular;MPOFB O.I. C.G. H.G.
9.6 99.1 22.3 At1g77630 844098 peptidoglycan-binding LysM domain-containing protein F:unknown;P:cell wall macromolecule catabolic process;C:anchored to plasma membrane, plasma membrane, anchored to membrane;PBOMF O.I. C.G. H.G.
9.4 99.1 58.0 At5g59500 836069 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOAFPM O.I. C.G. H.G.
9.4 99.1 33.4 At1g48460 841267 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast envelope;P O.I. C.G. H.G.
9.4 99.1 10.4 At3g55160 824682 - F:unknown;P:unknown;C:unknown;MFOP O.I. C.G. H.G.
9.4 99.1 7.0 At4g17860 827509 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;PF O.I. C.G. H.G.
9.3 99.1 24.6 At1g49650 841389 cell death associated protein-related F:hydrolase activity;P:metabolic process;C:unknown;BOPFMAV O.I. C.G. H.G.
9.3 99.1 20.7 At1g29270 839801 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
9.2 99.1 64.2 At1g10522 837593 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
9.2 99.1 11.7 At1g04110 839287 SDD1 (STOMATAL DENSITY AND DISTRIBUTION) Initially identified as a mutation affecting stomatal development and distribution. Encodes a protein similar to serine proteases. O.I. C.G. H.G.
9.1 99.1 35.3 At5g61000 836221 replication protein, putative F:DNA binding, nucleic acid binding;P:DNA replication;C:nucleus;PMOFA O.I. C.G. H.G.
9.1 99.1 14.5 At3g01140 821209 MYB106 (myb domain protein 106) Encodes a putative transcription factor that is a member of the MYB family. Loss of function mutations show an increased number of branchpoints in leaf trichomes suggesting a role in negative regulation of trichome branching. O.I. C.G. H.G.
9.0 99.1 39.4 At4g30620 829185 unknown protein F:unknown;P:biological_process unknown;C:chloroplast, chloroplast envelope;BOP O.I. C.G. H.G.
9.0 99.1 38.0 At1g08470 837368 strictosidine synthase family protein F:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endoplasmic reticulum, plasma membrane;PBMOFA O.I. C.G. H.G.
9.0 99.1 15.5 At4g11080 826709 high mobility group (HMG1/2) family protein F:transcription factor activity;P:unknown;C:nucleus, chloroplast;MOBFPAV O.I. C.G. H.G.
8.9 99.0 60.6 At5g63050 836425 EMB2759 (embryo defective 2759) F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:unknown;P O.I. C.G. H.G.
8.9 99.0 41.9 At1g73530 843687 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:chloroplast;MPFOBA O.I. C.G. H.G.
8.8 99.0 26.3 At5g58370 835949 GTP binding F:GTP binding;P:unknown;C:intracellular;BOFAPM O.I. C.G. H.G.
8.7 99.0 29.5 At1g63810 842684 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPA O.I. C.G. H.G.
8.7 99.0 28.8 At4g05440 825894 EDA35 (embryo sac development arrest 35) F:molecular_function unknown;P:polar nucleus fusion;C:cellular_component unknown;FMOPB O.I. C.G. H.G.
8.7 99.0 23.2 At5g08020 830696 RPA70B (RPA70-KDA SUBUNIT B) Encodes a homolog of Replication Protein A. rpa70b mutants are hypersensitive to UV-B radiation and MMS treatments suggesting a role for this protein in DNA damage repair. O.I. C.G. H.G.
8.7 99.0 12.4 At5g13830 831229 FtsJ-like methyltransferase family protein F:methyltransferase activity, RNA methyltransferase activity;P:rRNA processing, rRNA methylation;C:cellular_component unknown;OBMFAPV O.I. C.G. H.G.
8.7 99.0 8.4 At1g11300 837672 ATP binding / carbohydrate binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding F:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
8.6 99.0 48.5 At3g10270 820189 ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing) Protein targeting to mitochondria is influenced by UTR sequences. O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
32.2	99.7	38.0	At1g06100	837119	fatty acid desaturase family protein	F:oxidoreductase activity;P:lipid metabolic process;C:unknown;BOMFPV	O.I.	C.G.	H.G.
30.4	99.7	17.5	At3g61840	825357	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
27.1	99.7	161.1	At2g33850	817954	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OMFPBAV	O.I.	C.G.	H.G.
19.8	99.6	54.9	At1g65450	842857	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
18.3	99.5	50.0	At4g28780	828999	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM	O.I.	C.G.	H.G.
18.0	99.5	54.4	At2g28210	817367	ATACA2 (ALPHA CARBONIC ANHYDRASE 2)	F:carbonate dehydratase activity, zinc ion binding;P:response to carbon dioxide, one-carbon compound metabolic process;C:cellular_component unknown;MBPOFV	O.I.	C.G.	H.G.
17.7	99.5	14.8	At5g53210	835402	SPCH (SPEECHLESS)	Encodes a basic helix-loop-helix (bHLH) transcription factor that is necessary and sufficient for the asymmetric divisions that establish the stomatal lineage in Arabidopsis thaliana. Expression of SPCH in young epidermal cells allows these cells to make asymmetric divisions. SPCH is a substrate of a kinase MPK3 and MPK6.	O.I.	C.G.	H.G.
17.1	99.5	18.2	At1g34245	840324	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
16.8	99.5	19.3	At4g16750	827379	DRE-binding transcription factor, putative	encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.	O.I.	C.G.	H.G.
16.6	99.5	39.7	At4g14770	827132	TCX2 (TESMIN/TSO1-LIKE CXC 2)	F:transcription factor activity;P:regulation of transcription;C:chloroplast;OMPFB	O.I.	C.G.	H.G.
16.6	99.5	13.2	At4g28160	828931	hydroxyproline-rich glycoprotein family protein	F:molecular_function unknown;P:response to gibberellin stimulus;C:endomembrane system;P	O.I.	C.G.	H.G.
15.3	99.4	15.0	At5g47380	834785	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBO	O.I.	C.G.	H.G.
15.1	99.4	82.1	At1g25450	839131	KCS5 (3-KETOACYL-COA SYNTHASE 5)	Encodes KCS5, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).	O.I.	C.G.	H.G.
14.6	99.4	19.9	At5g04660	830343	CYP77A4	encodes a protein with cytochrome P450 domain	O.I.	C.G.	H.G.
14.0	99.4	51.7	At1g69200	843251	kinase	F:kinase activity;P:acetate fermentation, sucrose biosynthetic process, sucrose catabolic process, using beta-fructofuranosidase;C:nucleoid;BOPAMF	O.I.	C.G.	H.G.
13.9	99.4	11.6	At5g60880	836209	unknown protein	F:unknown;P:unknown;C:cellular_component unknown;OPMF	O.I.	C.G.	H.G.
13.9	99.4	9.3	At2g26520	817193	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB	O.I.	C.G.	H.G.
13.6	99.4	7.8	At4g03270	828000	CYCD6	F:cyclin-dependent protein kinase activity;P:regulation of cell cycle;C:nucleus;MPOFV	O.I.	C.G.	H.G.
13.2	99.4	14.2	At3g57600	824929	AP2 domain-containing transcription factor, putative	encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought.	O.I.	C.G.	H.G.
13.0	99.4	83.8	At2g25060	817044	plastocyanin-like domain-containing protein	F:electron carrier activity, copper ion binding;P:unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;P	O.I.	C.G.	H.G.
12.8	99.3	61.4	At3g51870	824350	binding / transporter	F:transporter activity, binding;P:transport, response to nematode;C:mitochondrial inner membrane, chloroplast, chloroplast envelope;MFPOV	O.I.	C.G.	H.G.
12.7	99.3	19.7	At1g74890	843828	ARR15 (RESPONSE REGULATOR 15)	Encodes a nuclear response regulator that acts as a negative regulator in cytokinin-mediated signal transduction. Transcript accumulates in leaves and roots in response to cytokinin treatment.	O.I.	C.G.	H.G.
12.7	99.3	14.9	At1g65445	842856	transferase-related	F:transferase activity, transferring acyl groups other than amino-acyl groups;P:biological_process unknown;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
12.1	99.3	21.7	At5g46690	834712	bHLH071 (beta HLH protein 71)	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFOM	O.I.	C.G.	H.G.
12.1	99.3	20.7	At5g40330	834031	MYB23 (MYB DOMAIN PROTEIN 23)	Encodes a MYB gene that, when overexpressed ectopically, can induce ectopic trichome formation. It is a member of subgroup 15, together with WER and GL1. Members of this subgroup share a conserved motif of 19 amino acids in the putative transcription activation domain at the C-terminal end. The gene is expressed in leaves, stems, flowers, seeds and roots and quite strongly in trichomes. There is partial functional redundancy between ATMYB23 and GL1. The two proteins are functionally equivalent with respect to the regulation of trichome initiation but not with respect to trichome branching - which is controlled by MYB23 and not GL1.	O.I.	C.G.	H.G.
12.1	99.3	15.4	At3g52550	824421	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFPVB	O.I.	C.G.	H.G.
12.0	99.3	43.2	At3g11600	820333	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
12.0	99.3	38.4	At4g16140	827300	proline-rich family protein	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;MPFOBVA	O.I.	C.G.	H.G.
12.0	99.3	12.6	At5g19170	832037	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFB	O.I.	C.G.	H.G.
11.6	99.3	67.9	At3g06730	819858	thioredoxin family protein	F:unknown;P:cell redox homeostasis;C:thylakoid, chloroplast, nucleoid;BOMPFA	O.I.	C.G.	H.G.
11.6	99.3	11.1	At2g35700	818139	ERF38 (ERF FAMILY PROTEIN 38)	encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. Thought to be involved in secondary cell wall metabolism.	O.I.	C.G.	H.G.
11.6	99.3	5.6	At1g27940	839687	PGP13 (P-GLYCOPROTEIN 13)	F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:integral to membrane;BOMAFPV	O.I.	C.G.	H.G.
11.4	99.3	18.6	At1g80080	844348	TMM (TOO MANY MOUTHS)	Encodes a transmembrane leucine-repeat containing receptor-like protein that is expressed in proliferative postprotodermal cells. Recessive mutation leads to disruption of asymmetric cell division during stomata development.	O.I.	C.G.	H.G.
11.3	99.3	158.1	At2g21140	816649	ATPRP2 (PROLINE-RICH PROTEIN 2)	Proline-rich protein expressed in expanding leaves, stems, flowers, and siliques.	O.I.	C.G.	H.G.
11.3	99.3	16.3	At1g15570	838127	CYCA2	A2-type cyclin. Negatively regulates endocycles and acts as a key regulator of ploidy levels in Arabidopsis endoreduplication. Interacts physically with CDKA;1. Expressed preferentially in trichomes and young developing tissues.	O.I.	C.G.	H.G.
11.2	99.2	5.7	At3g19085	821443	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
10.9	99.2	37.6	At1g09900	837522	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:membrane;POMFBA	O.I.	C.G.	H.G.
10.8	99.2	51.6	At5g08610	830762	DEAD box RNA helicase (RH26)	F:helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity;P:unknown;C:chloroplast;BOMFPAV	O.I.	C.G.	H.G.
10.7	99.2	72.6	At5g64620	836583	C/VIF2 (CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 2)	Plant cell wall (CWI) and vacuolar invertases (VI) play important roles in carbohydrate metabolism, stress responses and sugar signaling.	O.I.	C.G.	H.G.
10.7	99.2	46.8	At2g31890	817747	RAP	Protein contains putative RNA binding domain. Expressed in response to Pseudomonas syringae infection. Resistance requires silencing of AtRAP suggesting it functions as a negative regulator of plant disease resistance.	O.I.	C.G.	H.G.
10.7	99.2	37.8	At2g41940	818794	ZFP8 (ZINC FINGER PROTEIN 8)	Encodes a zinc finger protein containing only a single zinc finger.	O.I.	C.G.	H.G.
10.7	99.2	36.3	At4g34250	829574	KCS16 (3-KETOACYL-COA SYNTHASE 16)	Encodes KCS16, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).	O.I.	C.G.	H.G.
10.6	99.2	29.1	At4g02850	828160	phenazine biosynthesis PhzC/PhzF family protein	F:catalytic activity;P:biosynthetic process;C:endomembrane system;BOMFPA	O.I.	C.G.	H.G.
10.6	99.2	17.8	At5g51910	835266	TCP family transcription factor, putative	F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;P	O.I.	C.G.	H.G.
10.5	99.2	51.7	At2g35020	818066	UTP--glucose-1-phosphate uridylyltransferase family protein	F:nucleotidyltransferase activity;P:metabolic process;C:cellular_component unknown;MFOBP	O.I.	C.G.	H.G.
10.4	99.2	49.4	At3g59010	825070	pectinesterase family protein	F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMO	O.I.	C.G.	H.G.
10.3	99.2	24.6	At1g12020	837754	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PO	O.I.	C.G.	H.G.
10.3	99.2	9.3	At2g37390	818315	heavy-metal-associated domain-containing protein	F:metal ion binding;P:metal ion transport;C:cellular_component unknown;PBMF	O.I.	C.G.	H.G.
10.1	99.2	25.2	At5g54530	835541	unknown protein	F:unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
10.0	99.2	43.5	At2g34640	818029	PTAC12 (PLASTID TRANSCRIPTIONALLY ACTIVE12)	Present in transcriptionally active plastid chromosomes. Involved in plastid gene expression.	O.I.	C.G.	H.G.
10.0	99.2	37.4	At5g57180	835824	CIA2 (CHLOROPLAST IMPORT APPARATUS 2)	Transcription regulator responsible for specific upregulation of the translocon genes atToc33 and atToc75 in leaves. Involved in protein import into chloroplast.	O.I.	C.G.	H.G.
10.0	99.2	35.5	At5g23070	832371	thymidine kinase, putative	F:thymidine kinase activity, ATP binding;P:pyrimidine deoxyribonucleoside interconversion, anaerobic respiration;C:unknown;BOVMPAF	O.I.	C.G.	H.G.
9.9	99.1	22.7	At2g24120	816946	SCA3 (SCABRA 3)	F:DNA-directed RNA polymerase activity, DNA binding;P:transcription;C:mitochondrion;OFPMVB	O.I.	C.G.	H.G.
9.9	99.1	22.2	At4g20030	827748	RNA recognition motif (RRM)-containing protein	F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:nucleus;MPFOBA	O.I.	C.G.	H.G.
9.8	99.1	129.5	At3g16670	820919	unknown protein	F:molecular_function unknown;P:response to oxidative stress;C:endomembrane system;P	O.I.	C.G.	H.G.
9.8	99.1	57.5	At5g10920	830959	argininosuccinate lyase, putative / arginosuccinase, putative	F:argininosuccinate lyase activity, catalytic activity;P:arginine biosynthetic process via ornithine, arginine biosynthetic process;C:chloroplast, chloroplast stroma;BOAMFP	O.I.	C.G.	H.G.
9.7	99.1	18.5	At1g60230	842318	radical SAM domain-containing protein	F:iron-sulfur cluster binding, catalytic activity, RNA methyltransferase activity;P:rRNA processing;C:cytoplasm;BOPVA	O.I.	C.G.	H.G.
9.7	99.1	9.7	At4g30680	829191	MA3 domain-containing protein	F:translation initiation factor activity;P:biological_process unknown;C:unknown;MPOFB	O.I.	C.G.	H.G.
9.6	99.1	42.8	At3g15680	820811	zinc finger (Ran-binding) family protein	F:binding, zinc ion binding;P:biological_process unknown;C:intracellular;MPOFB	O.I.	C.G.	H.G.
9.6	99.1	22.3	At1g77630	844098	peptidoglycan-binding LysM domain-containing protein	F:unknown;P:cell wall macromolecule catabolic process;C:anchored to plasma membrane, plasma membrane, anchored to membrane;PBOMF	O.I.	C.G.	H.G.
9.4	99.1	58.0	At5g59500	836069	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOAFPM	O.I.	C.G.	H.G.
9.4	99.1	33.4	At1g48460	841267	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast envelope;P	O.I.	C.G.	H.G.
9.4	99.1	10.4	At3g55160	824682	-	F:unknown;P:unknown;C:unknown;MFOP	O.I.	C.G.	H.G.
9.4	99.1	7.0	At4g17860	827509	unknown protein	F:unknown;P:biological_process unknown;C:endomembrane system;PF	O.I.	C.G.	H.G.
9.3	99.1	24.6	At1g49650	841389	cell death associated protein-related	F:hydrolase activity;P:metabolic process;C:unknown;BOPFMAV	O.I.	C.G.	H.G.
9.3	99.1	20.7	At1g29270	839801	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
9.2	99.1	64.2	At1g10522	837593	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
9.2	99.1	11.7	At1g04110	839287	SDD1 (STOMATAL DENSITY AND DISTRIBUTION)	Initially identified as a mutation affecting stomatal development and distribution. Encodes a protein similar to serine proteases.	O.I.	C.G.	H.G.
9.1	99.1	35.3	At5g61000	836221	replication protein, putative	F:DNA binding, nucleic acid binding;P:DNA replication;C:nucleus;PMOFA	O.I.	C.G.	H.G.
9.1	99.1	14.5	At3g01140	821209	MYB106 (myb domain protein 106)	Encodes a putative transcription factor that is a member of the MYB family. Loss of function mutations show an increased number of branchpoints in leaf trichomes suggesting a role in negative regulation of trichome branching.	O.I.	C.G.	H.G.
9.0	99.1	39.4	At4g30620	829185	unknown protein	F:unknown;P:biological_process unknown;C:chloroplast, chloroplast envelope;BOP	O.I.	C.G.	H.G.
9.0	99.1	38.0	At1g08470	837368	strictosidine synthase family protein	F:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endoplasmic reticulum, plasma membrane;PBMOFA	O.I.	C.G.	H.G.
9.0	99.1	15.5	At4g11080	826709	high mobility group (HMG1/2) family protein	F:transcription factor activity;P:unknown;C:nucleus, chloroplast;MOBFPAV	O.I.	C.G.	H.G.
8.9	99.0	60.6	At5g63050	836425	EMB2759 (embryo defective 2759)	F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:unknown;P	O.I.	C.G.	H.G.
8.9	99.0	41.9	At1g73530	843687	RNA recognition motif (RRM)-containing protein	F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:chloroplast;MPFOBA	O.I.	C.G.	H.G.
8.8	99.0	26.3	At5g58370	835949	GTP binding	F:GTP binding;P:unknown;C:intracellular;BOFAPM	O.I.	C.G.	H.G.
8.7	99.0	29.5	At1g63810	842684	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPA	O.I.	C.G.	H.G.
8.7	99.0	28.8	At4g05440	825894	EDA35 (embryo sac development arrest 35)	F:molecular_function unknown;P:polar nucleus fusion;C:cellular_component unknown;FMOPB	O.I.	C.G.	H.G.
8.7	99.0	23.2	At5g08020	830696	RPA70B (RPA70-KDA SUBUNIT B)	Encodes a homolog of Replication Protein A. rpa70b mutants are hypersensitive to UV-B radiation and MMS treatments suggesting a role for this protein in DNA damage repair.	O.I.	C.G.	H.G.
8.7	99.0	12.4	At5g13830	831229	FtsJ-like methyltransferase family protein	F:methyltransferase activity, RNA methyltransferase activity;P:rRNA processing, rRNA methylation;C:cellular_component unknown;OBMFAPV	O.I.	C.G.	H.G.
8.7	99.0	8.4	At1g11300	837672	ATP binding / carbohydrate binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding	F:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
8.6	99.0	48.5	At3g10270	820189	ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)	Protein targeting to mitochondria is influenced by UTR sequences.	O.I.	C.G.	H.G.

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GSM ID	GSM131815
Assay name	Quick_A56_3-2hr_Rep3_ATH1
GSE experiment	GSE5638: Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 3: Ambient CO2 and Low Light)

Microarray experiments to specifically-expressed genes

GSM ID GSM131815 Assay name Quick_A56_3-2hr_Rep3_ATH1 GSE experiment GSE5638: Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 3: Ambient CO2 and Low Light)

GSM ID GSM131815

Assay name Quick_A56_3-2hr_Rep3_ATH1

GSE experiment GSE5638: Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 3: Ambient CO2 and Low Light)