Microarray experiments to specifically-expressed genes

GSM ID GSM131811
Assay name Quick_A38_3-12hr_Rep2_ATH1
GSE experiment GSE5638: Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 3: Ambient CO2 and Low Light)

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
23.999.6151.2At2g33850817954unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OMFPBAVO.I.C.G.H.G.
19.199.619.1At1g52770841710phototropic-responsive NPH3 family proteinF:signal transducer activity;P:response to light stimulus;C:cellular_component unknown;PO.I.C.G.H.G.
19.099.513.8At3g61840825357unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
18.999.581.4At3g20810821629transcription factor jumonji (jmjC) domain-containing proteinF:transcription factor activity;P:biological_process unknown;C:cellular_component unknown;MBOFPVO.I.C.G.H.G.
18.099.534.0At2g40670818662ARR16 (ARABIDOPSIS RESPONSE REGULATOR 16)response regulator 16O.I.C.G.H.G.
15.599.548.2At1g31690840056amine oxidase/ copper ion binding / quinone bindingF:quinone binding, amine oxidase activity, copper ion binding;P:cellular amine metabolic process;C:endomembrane system;FBMOPAO.I.C.G.H.G.
15.099.431.9At3g26200822221CYP71B22putative cytochrome P450O.I.C.G.H.G.
14.499.443.8At2g41940818794ZFP8 (ZINC FINGER PROTEIN 8)Encodes a zinc finger protein containing only a single zinc finger.O.I.C.G.H.G.
14.399.490.7At3g28290822455AT14AEncodes a protein with sequence similarity to integrins. Localized to the cytoplasm and plasma membrane. Expressed in all tissues assayed.O.I.C.G.H.G.
14.199.457.4At3g59010825070pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMOO.I.C.G.H.G.
13.699.430.5At1g79840844323GL2 (GLABRA 2)Glabra 2, a homeodomain protein affects epidermal cell identity including trichomes, root hairs, and seed coat. It also down-regulates seed oil content. Expressed in atrichoblasts and required to suppress root hair development. Also expressed abundantly during early seed development. Directly regulated by WER.O.I.C.G.H.G.
13.299.476.8At1g25450839131KCS5 (3-KETOACYL-COA SYNTHASE 5)Encodes KCS5, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).O.I.C.G.H.G.
12.299.321.7At5g46690834712bHLH071 (beta HLH protein 71)F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFOMO.I.C.G.H.G.
12.199.38.7At2g26520817193unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO.I.C.G.H.G.
11.899.340.8At1g68585843188unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
11.199.213.9At1g31680--O.I.C.G.H.G.
11.099.223.0At3g13175820507unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
10.699.2132.5At4g17560827471ribosomal protein L19 family proteinF:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, chloroplast stroma, chloroplast, membrane, chloroplast envelope;BOPMFO.I.C.G.H.G.
10.399.296.6At5g47500834800pectinesterase family proteinF:pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO.I.C.G.H.G.
10.399.28.7At1g61450842439unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
10.199.26.7At4g03270828000CYCD6F:cyclin-dependent protein kinase activity;P:regulation of cell cycle;C:nucleus;MPOFVO.I.C.G.H.G.
10.099.239.5At3g11600820333unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
10.099.213.9At1g34245840324-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
10.099.25.5At3g49950824157scarecrow transcription factor family proteinF:transcription factor activity;P:regulation of transcription;C:unknown;PBO.I.C.G.H.G.
9.799.138.9At4g00730828022ANL2 (ANTHOCYANINLESS 2)Encodes a homeodomain protein of the HD-GLABRA2 group. Involved in the accumulation of anthocyanin and in root developmentO.I.C.G.H.G.
9.799.122.0At4g20030827748RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:nucleus;MPFOBAO.I.C.G.H.G.
9.499.120.4At1g78010844136tRNA modification GTPase, putativeF:GTP binding, GTPase activity;P:small GTPase mediated signal transduction, tRNA modification;C:intracellular;BOMAFPO.I.C.G.H.G.
9.499.115.8At4g11080826709high mobility group (HMG1/2) family proteinF:transcription factor activity;P:unknown;C:nucleus, chloroplast;MOBFPAVO.I.C.G.H.G.
9.399.147.8At4g12970826909unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
9.399.122.8At1g59840842278CCB4 (COFACTOR ASSEMBLY OF COMPLEX C)F:molecular_function unknown;P:cytochrome b6f complex assembly;C:chloroplast;BOPO.I.C.G.H.G.
9.299.186.8At1g13270837887MAP1C (METHIONINE AMINOPEPTIDASE 1B)Encodes a methionine aminopeptidase formerly called MAP1B, renamed to MAP1C.O.I.C.G.H.G.
9.299.148.3At2g35020818066UTP--glucose-1-phosphate uridylyltransferase family proteinF:nucleotidyltransferase activity;P:metabolic process;C:cellular_component unknown;MFOBPO.I.C.G.H.G.
9.299.133.1At2g13610815846ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMFAPVO.I.C.G.H.G.
9.299.111.0At1g21060838700unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMBOFO.I.C.G.H.G.
9.099.132.0At2g02080814739AtIDD4 (Arabidopsis thaliana Indeterminate(ID)-Domain 4)F:transcription factor activity;P:unknown;C:intracellular, chloroplast;MOPFBVAO.I.C.G.H.G.
8.999.077.5At1g08980837418AMI1 (AMIDASE 1)Encodes an enzyme with similarity to bacterial acylamidohydrolases and exhibits indole-3-acetamide amidohydrolase activity in vitro. This enzyme may be involved in the in vivo biosynthesis of indole-acetic acid from indole-3-acetamide, a native metabolite of A. thaliana. It appears to exist as a monomer.O.I.C.G.H.G.
8.899.045.6At2g22450816777riboflavin biosynthesis protein, putativeF:3,4-dihydroxy-2-butanone-4-phosphate synthase activity, GTP cyclohydrolase II activity;P:riboflavin biosynthetic process;C:chloroplast;BOFAPO.I.C.G.H.G.
8.899.011.6At3g57600824929AP2 domain-containing transcription factor, putativeencodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought.O.I.C.G.H.G.
8.799.0108.2At1g02280839248TOC33 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 33)Encodes a GTP-binding GTP-ase. Component of the chloroplast protein import machinery. Required for import of POR B into plastids. Toc33 phosphorylation may not play an important role in vivo.O.I.C.G.H.G.
8.799.014.1At3g01140821209MYB106 (myb domain protein 106)Encodes a putative transcription factor that is a member of the MYB family. Loss of function mutations show an increased number of branchpoints in leaf trichomes suggesting a role in negative regulation of trichome branching.O.I.C.G.H.G.
8.799.06.7At4g17860827509unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;PFO.I.C.G.H.G.



Back to the CoP portal site

Back to the KAGIANA project homepage