Microarray experiments to specifically-expressed genes

GSM ID GSM131794
Assay name Quick_A85_2-4hr-Rep4_ATH1
GSE experiment GSE5637: Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 2: Elevated CO2 and Ambient Light)

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
26.199.7158.0At2g33850817954unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OMFPBAVO.I.C.G.H.G.
20.999.630.6At1g06100837119fatty acid desaturase family proteinF:oxidoreductase activity;P:lipid metabolic process;C:unknown;BOMFPVO.I.C.G.H.G.
19.799.688.4At3g06730819858thioredoxin family proteinF:unknown;P:cell redox homeostasis;C:thylakoid, chloroplast, nucleoid;BOMPFAO.I.C.G.H.G.
19.799.611.1At2g26520817193unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO.I.C.G.H.G.
18.099.572.8At3g51870824350binding / transporterF:transporter activity, binding;P:transport, response to nematode;C:mitochondrial inner membrane, chloroplast, chloroplast envelope;MFPOVO.I.C.G.H.G.
15.299.412.1At5g60880836209unknown proteinF:unknown;P:unknown;C:cellular_component unknown;OPMFO.I.C.G.H.G.
14.499.488.1At2g25060817044plastocyanin-like domain-containing proteinF:electron carrier activity, copper ion binding;P:unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;PO.I.C.G.H.G.
14.299.448.3At2g28210817367ATACA2 (ALPHA CARBONIC ANHYDRASE 2)F:carbonate dehydratase activity, zinc ion binding;P:response to carbon dioxide, one-carbon compound metabolic process;C:cellular_component unknown;MBPOFVO.I.C.G.H.G.
14.199.414.2At1g10930837636RECQ4ADNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination.O.I.C.G.H.G.
13.399.450.4At1g69200843251kinaseF:kinase activity;P:acetate fermentation, sucrose biosynthetic process, sucrose catabolic process, using beta-fructofuranosidase;C:nucleoid;BOPAMFO.I.C.G.H.G.
13.299.420.8At3g55660824732ROPGEF6Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.O.I.C.G.H.G.
13.099.415.8At1g34245840324-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
12.599.355.5At5g08610830762DEAD box RNA helicase (RH26)F:helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity;P:unknown;C:chloroplast;BOMFPAVO.I.C.G.H.G.
12.299.374.1At1g10522837593unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
12.299.373.8At1g25450839131KCS5 (3-KETOACYL-COA SYNTHASE 5)Encodes KCS5, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).O.I.C.G.H.G.
11.899.340.1At4g28780828999GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
11.799.347.1At2g34640818029PTAC12 (PLASTID TRANSCRIPTIONALLY ACTIVE12)Present in transcriptionally active plastid chromosomes. Involved in plastid gene expression.O.I.C.G.H.G.
11.799.340.4At3g48500824009RNA bindingF:RNA binding;P:unknown;C:plastid chromosome, chloroplast, nucleoid;POVMFBO.I.C.G.H.G.
11.799.338.3At5g23070832371thymidine kinase, putativeF:thymidine kinase activity, ATP binding;P:pyrimidine deoxyribonucleoside interconversion, anaerobic respiration;C:unknown;BOVMPAFO.I.C.G.H.G.
11.699.337.8At4g34250829574KCS16 (3-KETOACYL-COA SYNTHASE 16)Encodes KCS16, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).O.I.C.G.H.G.
11.699.324.7At2g24120816946SCA3 (SCABRA 3)F:DNA-directed RNA polymerase activity, DNA binding;P:transcription;C:mitochondrion;OFPMVBO.I.C.G.H.G.
11.399.322.0At4g02800828171unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMFBPVAO.I.C.G.H.G.
11.399.318.0At3g21300821684RNA methyltransferase family proteinF:methyltransferase activity, RNA binding, RNA methyltransferase activity;P:RNA processing;C:unknown;BOMFAPVO.I.C.G.H.G.
11.199.232.4At4g14770827132TCX2 (TESMIN/TSO1-LIKE CXC 2)F:transcription factor activity;P:regulation of transcription;C:chloroplast;OMPFBO.I.C.G.H.G.
11.199.217.2At4g11080826709high mobility group (HMG1/2) family proteinF:transcription factor activity;P:unknown;C:nucleus, chloroplast;MOBFPAVO.I.C.G.H.G.
10.999.273.4At4g16390827333-F:unknown;P:unknown;C:chloroplast;POFMBAO.I.C.G.H.G.
10.999.226.6At1g49650841389cell death associated protein-relatedF:hydrolase activity;P:metabolic process;C:unknown;BOPFMAVO.I.C.G.H.G.
10.999.210.5At3g61840825357unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
10.699.239.9At1g31690840056amine oxidase/ copper ion binding / quinone bindingF:quinone binding, amine oxidase activity, copper ion binding;P:cellular amine metabolic process;C:endomembrane system;FBMOPAO.I.C.G.H.G.
10.699.238.5At5g57180835824CIA2 (CHLOROPLAST IMPORT APPARATUS 2)Transcription regulator responsible for specific upregulation of the translocon genes atToc33 and atToc75 in leaves. Involved in protein import into chloroplast.O.I.C.G.H.G.
10.699.213.6At1g31680--O.I.C.G.H.G.
10.599.298.0At5g10390830903histone H3F:DNA binding;P:nucleosome assembly;C:nucleus, chloroplast, nucleosome;MFPOO.I.C.G.H.G.
10.599.235.5At1g48460841267unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast envelope;PO.I.C.G.H.G.
10.599.210.6At4g21270827876ATK1 (ARABIDOPSIS THALIANA KINESIN 1)Encodes a kinesin-like motor protein heavy chain. Loss of function mutations have reduced fertility and are defective in spindle formation in male meiosis.O.I.C.G.H.G.
10.199.210.3At4g28160828931hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:response to gibberellin stimulus;C:endomembrane system;PO.I.C.G.H.G.
10.099.219.7At5g46690834712bHLH071 (beta HLH protein 71)F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFOMO.I.C.G.H.G.
10.099.218.8At3g03630821203CS26O-acetylserine (thiol) lyaseO.I.C.G.H.G.
10.099.29.1At2g37390818315heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:cellular_component unknown;PBMFO.I.C.G.H.G.
9.899.114.7At4g16750827379DRE-binding transcription factor, putativeencodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.O.I.C.G.H.G.
9.699.128.5At3g20240821568mitochondrial substrate carrier family proteinF:transporter activity, binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPOO.I.C.G.H.G.
9.599.179.8At2g27840817331HDT4Belongs to the plant specific HD2 type proteins; similar to nucleolar Zea mays histone deacetylase; HD2-p39O.I.C.G.H.G.
9.599.116.2At1g66520842970pde194 (pigment defective 194)F:hydroxymethyl-, formyl- and related transferase activity, formyltetrahydrofolate deformylase activity, catalytic activity;P:purine ribonucleotide biosynthetic process, biosynthetic process;C:unknown;BOMFPAVO.I.C.G.H.G.
9.599.19.3At4g17240827436unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;POBFO.I.C.G.H.G.
9.399.172.6At4g23800828480high mobility group (HMG1/2) family proteinF:transcription factor activity;P:unknown;C:nucleus, chloroplast;MOBFPAVO.I.C.G.H.G.
9.399.138.5At3g61100825282unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
9.199.146.5At1g72040843535deoxynucleoside kinase familyF:phosphotransferase activity, alcohol group as acceptor, ATP binding;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;C:nucleus;BOMVPO.I.C.G.H.G.
9.199.124.7At1g51100841533unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast, chloroplast stroma;PO.I.C.G.H.G.
9.199.114.6At1g15570838127CYCA2A2-type cyclin. Negatively regulates endocycles and acts as a key regulator of ploidy levels in Arabidopsis endoreduplication. Interacts physically with CDKA;1. Expressed preferentially in trichomes and young developing tissues.O.I.C.G.H.G.
8.999.012.2At2g24970817036unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
8.899.0112.5At2g32180817777PTAC18 (PLASTID TRANSCRIPTIONALLY ACTIVE 18)F:molecular_function unknown;P:biological_process unknown;C:plastid chromosome, nucleoid;PBOO.I.C.G.H.G.
8.899.047.8At3g10690820238DNA gyrase subunit A family proteinF:DNA topoisomerase activity, DNA topoisomerase (ATP-hydrolyzing) activity, DNA binding, catalytic activity, ATP binding;P:DNA topological change, DNA metabolic process;C:mitochondrion, chloroplast, nucleoid;OBMFVPAO.I.C.G.H.G.
8.699.032.9At2g44040819009dihydrodipicolinate reductase family proteinF:dihydrodipicolinate reductase activity;P:oxidation reduction, lysine biosynthetic process via diaminopimelate, metabolic process, diaminopimelate biosynthetic process;C:chloroplast;BOAPMO.I.C.G.H.G.
8.699.019.2At2g02740814803WHY3 (WHIRLY 3)Encodes a homolog of the potato p24 protein. It shares the conserved KGKAAL domain, a putative DNA-binding domain, with potato p24 and is localized to the plastid and not the nucleus.O.I.C.G.H.G.



Back to the CoP portal site

Back to the KAGIANA project homepage