Microarray experiments to specifically-expressed genes

GSM ID GSM131784
Assay name Quick_A41_2-24hr_Rep2_ATH1
GSE experiment GSE5637: Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 2: Elevated CO2 and Ambient Light)

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
37.699.7189.5At2g33850817954unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OMFPBAVO.I.C.G.H.G.
33.799.751.9At4g02850828160phenazine biosynthesis PhzC/PhzF family proteinF:catalytic activity;P:biosynthetic process;C:endomembrane system;BOMFPAO.I.C.G.H.G.
23.799.632.6At1g06100837119fatty acid desaturase family proteinF:oxidoreductase activity;P:lipid metabolic process;C:unknown;BOMFPVO.I.C.G.H.G.
18.399.520.1At4g16750827379DRE-binding transcription factor, putativeencodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.O.I.C.G.H.G.
18.299.513.6At3g61840825357unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
17.999.5102.8At5g12110831084elongation factor 1B alpha-subunit 1 (eEF1Balpha1)F:translation elongation factor activity;P:translational elongation;C:eukaryotic translation elongation factor 1 complex;MOPFO.I.C.G.H.G.
17.799.57.4At3g49950824157scarecrow transcription factor family proteinF:transcription factor activity;P:regulation of transcription;C:unknown;PBO.I.C.G.H.G.
17.399.513.0At5g60880836209unknown proteinF:unknown;P:unknown;C:cellular_component unknown;OPMFO.I.C.G.H.G.
16.799.545.4At4g16140827300proline-rich family proteinF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;MPFOBVAO.I.C.G.H.G.
15.699.512.9At2g35700818139ERF38 (ERF FAMILY PROTEIN 38)encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. Thought to be involved in secondary cell wall metabolism.O.I.C.G.H.G.
15.299.437.9At4g14770827132TCX2 (TESMIN/TSO1-LIKE CXC 2)F:transcription factor activity;P:regulation of transcription;C:chloroplast;OMPFBO.I.C.G.H.G.
15.199.417.0At1g34245840324-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G. proteinF:unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
13.499.412.9At5g53210835402SPCH (SPEECHLESS)Encodes a basic helix-loop-helix (bHLH) transcription factor that is necessary and sufficient for the asymmetric divisions that establish the stomatal lineage in Arabidopsis thaliana. Expression of SPCH in young epidermal cells allows these cells to make asymmetric divisions. SPCH is a substrate of a kinase MPK3 and MPK6.O.I.C.G.H.G.
13.399.4171.5At2g21140816649ATPRP2 (PROLINE-RICH PROTEIN 2)Proline-rich protein expressed in expanding leaves, stems, flowers, and siliques.O.I.C.G.H.G.
13.099.422.4At5g46690834712bHLH071 (beta HLH protein 71)F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFOMO.I.C.G.H.G.
13.099.417.3At3g01140821209MYB106 (myb domain protein 106)Encodes a putative transcription factor that is a member of the MYB family. Loss of function mutations show an increased number of branchpoints in leaf trichomes suggesting a role in negative regulation of trichome branching.O.I.C.G.H.G.
12.799.322.9At5g41460834147fringe-related proteinF:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:unknown;MPFOO.I.C.G.H.G.
12.699.311.5At4g28160828931hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:response to gibberellin stimulus;C:endomembrane system;PO.I.C.G.H.G.
11.899.315.2At3g52550824421-F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFPVBO.I.C.G.H.G.
11.599.3140.5At3g16670820919unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:endomembrane system;PO.I.C.G.H.G.
11.399.312.1At1g49620841386ICK5Kip-related protein (KRP) gene, encodes CDK (cyclin-dependent kinase) inhibitor (CKI), negative regulator of cell division. A member of seven KRP genes found in Arabidopsis thaliana. Differential expression patterns for distinct KRPs were revealed by in situ hybridization. Binds to D type cyclins and may inhibit cell cycle.O.I.C.G.H.G. an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. mRNA levels are not induced in response to wounding or to fungal infection by P. parasitica. mRNA is expressed in flowers, to a lesser degree in mature leaves and siliques and marginally in seedling roots and bolting stems of mature plants. The catalytic efficiency was in the following (descending) order: p-coumaric acid, caffeic acid, ferulic acid, cinnamic acid and 5-OH-ferulic acid. At4CL3 was unable to use sinapic acid as substrate.O.I.C.G.H.G.
10.799.235.7At2g13610815846ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMFAPVO.I.C.G.H.G.
10.699.225.9At5g54530835541unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G. (3-KETOACYL-COA SYNTHASE 5)Encodes KCS5, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).O.I.C.G.H.G. (P-GLYCOPROTEIN 13)F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:integral to membrane;BOMAFPVO.I.C.G.H.G. proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;POO.I.C.G.H.G.
9.499.123.6At3g23210821899basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOBAO.I.C.G.H.G.
9.399.156.7At3g49670824129BAM2 (BARELY ANY MERISTEM 2)Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. Very similar to BAM1,with more than 85% a.a. identity. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. Anthers of double mutants (bam1bam2) appeared abnormal at a very early stage and lack the endothecium, middle, and tapetum layers. Further analyses revealed that cells interior to the epidermis (in anther tissue) acquire some characteristics of pollen mother cells (PMCs), suggesting defects in cell fate specification. The pollen mother-like cells degenerate before the completion of meiosis, suggesting that these cells are defective. In addition, the BAM2 expression pattern supports both an early role in promoting somatic cell fates and a subsequent function in the PMCs.O.I.C.G.H.G. (EXPANSIN A5)Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)O.I.C.G.H.G. proteinF:unknown;P:biological_process unknown;C:endomembrane system;PFO.I.C.G.H.G. proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G. a protein with cytochrome P450 domainO.I.C.G.H.G. proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBOO.I.C.G.H.G.
8.699.093.5At1g06000837109UDP-glucoronosyl/UDP-glucosyl transferase family proteinencodes a flavonol-7-O-rhamnosyltransferase involved in the formation of rhamnosylated flavonolsO.I.C.G.H.G.

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