Microarray experiments to specifically-expressed genes

GSM ID GSM131755
Assay name Quick_A28_1-2hr_Rep2_ATH1
GSE experiment GSE5636: Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 1: Ambient CO2 and Ambient Light)

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
34.299.7180.8At2g33850817954unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OMFPBAVO.I.C.G.H.G.
33.899.738.9At1g06100837119fatty acid desaturase family proteinF:oxidoreductase activity;P:lipid metabolic process;C:unknown;BOMFPVO.I.C.G.H.G.
30.199.770.3At2g28210817367ATACA2 (ALPHA CARBONIC ANHYDRASE 2)F:carbonate dehydratase activity, zinc ion binding;P:response to carbon dioxide, one-carbon compound metabolic process;C:cellular_component unknown;MBPOFVO.I.C.G.H.G.
27.499.716.6At3g61840825357unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
24.099.615.3At5g60880836209unknown proteinF:unknown;P:unknown;C:cellular_component unknown;OPMFO.I.C.G.H.G.
23.999.616.0At2g35700818139ERF38 (ERF FAMILY PROTEIN 38)encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. Thought to be involved in secondary cell wall metabolism.O.I.C.G.H.G.
23.499.656.5At4g28780828999GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
21.799.698.4At1g25450839131KCS5 (3-KETOACYL-COA SYNTHASE 5)Encodes KCS5, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).O.I.C.G.H.G.
21.799.615.1At4g28160828931hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:response to gibberellin stimulus;C:endomembrane system;PO.I.C.G.H.G.
19.999.676.5At3g51870824350binding / transporterF:transporter activity, binding;P:transport, response to nematode;C:mitochondrial inner membrane, chloroplast, chloroplast envelope;MFPOVO.I.C.G.H.G.
18.899.517.0At3g57600824929AP2 domain-containing transcription factor, putativeencodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought.O.I.C.G.H.G.
18.799.553.3At1g65450842857transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO.I.C.G.H.G.
18.099.57.0At1g27940839687PGP13 (P-GLYCOPROTEIN 13)F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:integral to membrane;BOMAFPVO.I.C.G.H.G.
16.799.545.8At5g23070832371thymidine kinase, putativeF:thymidine kinase activity, ATP binding;P:pyrimidine deoxyribonucleoside interconversion, anaerobic respiration;C:unknown;BOVMPAFO.I.C.G.H.G.
16.599.521.2At5g04660830343CYP77A4encodes a protein with cytochrome P450 domainO.I.C.G.H.G.
15.899.544.1At4g16140827300proline-rich family proteinF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;MPFOBVAO.I.C.G.H.G.
15.799.530.2At3g59670825136unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
15.299.453.7At2g34640818029PTAC12 (PLASTID TRANSCRIPTIONALLY ACTIVE12)Present in transcriptionally active plastid chromosomes. Involved in plastid gene expression.O.I.C.G.H.G.
15.099.451.2At2g47990819411SWA1 (SLOW WALKER1)Encodes a transducin family nucleolar protein with six WD40 repeats that is most likely involved in 18S rRNA biogenesis. The slow progression of the gametophytic division cycles in swa1 suggested that the SWA1 protein is required for the normal progression of mitotic division cycles through the regulation of cell metabolism. Ubiquitously expressed throughout the plant.O.I.C.G.H.G.
14.999.457.5At3g04770819637RPSAb (40S ribosomal protein SA B)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, chloroplast, membrane;BMOAFPO.I.C.G.H.G.
14.599.439.3At3g14740820702PHD finger family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;MFPOO.I.C.G.H.G.
14.399.415.5At2g24970817036unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
14.299.444.6At5g57180835824CIA2 (CHLOROPLAST IMPORT APPARATUS 2)Transcription regulator responsible for specific upregulation of the translocon genes atToc33 and atToc75 in leaves. Involved in protein import into chloroplast.O.I.C.G.H.G.
14.099.496.7At2g27840817331HDT4Belongs to the plant specific HD2 type proteins; similar to nucleolar Zea mays histone deacetylase; HD2-p39O.I.C.G.H.G.
14.099.443.7At5g61000836221replication protein, putativeF:DNA binding, nucleic acid binding;P:DNA replication;C:nucleus;PMOFAO.I.C.G.H.G.
13.799.441.0At4g34250829574KCS16 (3-KETOACYL-COA SYNTHASE 16)Encodes KCS16, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).O.I.C.G.H.G.
13.799.411.2At5g26790832737unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
13.299.431.4At5g05990830486mitochondrial glycoprotein family protein / MAM33 family proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion, mitochondrial matrix;PFOMO.I.C.G.H.G.
13.299.412.8At5g53210835402SPCH (SPEECHLESS)Encodes a basic helix-loop-helix (bHLH) transcription factor that is necessary and sufficient for the asymmetric divisions that establish the stomatal lineage in Arabidopsis thaliana. Expression of SPCH in young epidermal cells allows these cells to make asymmetric divisions. SPCH is a substrate of a kinase MPK3 and MPK6.O.I.C.G.H.G.
13.299.49.1At2g26520817193unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO.I.C.G.H.G.
13.199.414.3At2g19640816483ASHR2 (ASH1-RELATED PROTEIN 2)F:molecular_function unknown;P:biological_process unknown;C:unknown;MFOPVO.I.C.G.H.G.
12.999.339.3At1g48460841267unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast envelope;PO.I.C.G.H.G.
12.999.315.8At1g34245840324-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
12.899.349.6At1g69200843251kinaseF:kinase activity;P:acetate fermentation, sucrose biosynthetic process, sucrose catabolic process, using beta-fructofuranosidase;C:nucleoid;BOPAMFO.I.C.G.H.G.
12.899.325.5At2g26550817196HO2 (HEME OXYGENASE 2)encodes a heme oxygenase that catalyzes the oxidation of heme to biliverdin IXalpha, CO and Fe(2+), a committed step in the biosynthesis of the phytochrome chromophore phytochromobilin.O.I.C.G.H.G.
12.899.322.5At5g23420832408HMGB6Encodes HMGB6, a protein belonging to the subgroup of HMGB (high mobility group B) proteins. Localized in the nucleus. Binds to supercoiled DNA in vitro. HMGB6 is phosphorylated by protein kinase CK2alpha within its acidic C-terminal domain.O.I.C.G.H.G.
12.799.380.9At2g29570817506PCNA2 (PROLIFERATING CELL NUCLEAR ANTIGEN 2)Functionally interacts with POLH to repair DNA damaged by UVB damage.O.I.C.G.H.G.
12.799.354.5At3g59010825070pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMOO.I.C.G.H.G.
12.599.343.6At5g57280835833methyltransferaseF:methyltransferase activity;P:metabolic process;C:unknown;BOMFPAO.I.C.G.H.G.
12.599.313.6At5g47380834785unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBOO.I.C.G.H.G.
12.499.381.8At2g25060817044plastocyanin-like domain-containing proteinF:electron carrier activity, copper ion binding;P:unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;PO.I.C.G.H.G.
12.499.355.3At5g08610830762DEAD box RNA helicase (RH26)F:helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity;P:unknown;C:chloroplast;BOMFPAVO.I.C.G.H.G.
12.499.350.5At2g31890817747RAPProtein contains putative RNA binding domain. Expressed in response to Pseudomonas syringae infection. Resistance requires silencing of AtRAP suggesting it functions as a negative regulator of plant disease resistance.O.I.C.G.H.G.
12.499.331.5At4g02850828160phenazine biosynthesis PhzC/PhzF family proteinF:catalytic activity;P:biosynthetic process;C:endomembrane system;BOMFPAO.I.C.G.H.G.
12.499.323.0At1g23280838937MAK16 protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVAO.I.C.G.H.G.
12.299.375.4At3g17170820974RFC3 (REGULATOR OF FATTY-ACID COMPOSITION 3)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, intracellular, chloroplast;MOBFPVAO.I.C.G.H.G.
12.199.336.8At5g50915835164basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:response to gibberellin stimulus;C:nucleus;PFMO.I.C.G.H.G.
11.899.339.3At1g09900837522pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:membrane;POMFBAO.I.C.G.H.G.
11.699.335.9At2g3222081778160S ribosomal protein L27 (RPL27A)F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome, intracellular, membrane;MOFPO.I.C.G.H.G.
11.599.324.5At2g24120816946SCA3 (SCABRA 3)F:DNA-directed RNA polymerase activity, DNA binding;P:transcription;C:mitochondrion;OFPMVBO.I.C.G.H.G.
11.599.320.4At3g06740819859zinc finger (GATA type) family proteinF:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PFMOO.I.C.G.H.G.
11.399.326.0At1g11600837704CYP77B1member of CYP77BO.I.C.G.H.G.
11.299.263.8At5g23310832395FSD3 (FE SUPEROXIDE DISMUTASE 3)Fe superoxide dismutaseO.I.C.G.H.G.
11.199.280.2At3g5749082491640S ribosomal protein S2 (RPS2D)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, ribosome, intracellular, membrane;BOMAFPO.I.C.G.H.G.
11.199.219.7At3g03630821203CS26O-acetylserine (thiol) lyaseO.I.C.G.H.G.
11.199.212.6At1g10930837636RECQ4ADNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination.O.I.C.G.H.G.
11.199.29.6At2g37390818315heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:cellular_component unknown;PBMFO.I.C.G.H.G.
11.099.243.0At4g28310828946unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMO.I.C.G.H.G.
10.999.219.5At3g12170820394DNAJ heat shock N-terminal domain-containing proteinF:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMFPAVO.I.C.G.H.G.
10.999.216.1At2g40435818637-F:unknown;P:unknown;C:unknown;PO.I.C.G.H.G.
10.999.212.8At2g14660815954unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBMFPAO.I.C.G.H.G.
10.899.265.4At3g06730819858thioredoxin family proteinF:unknown;P:cell redox homeostasis;C:thylakoid, chloroplast, nucleoid;BOMPFAO.I.C.G.H.G.
10.799.222.9At5g07900830684mitochondrial transcription termination factor family protein / mTERF family proteinF:molecular_function unknown;P:biological_process unknown;C:membrane;PMOO.I.C.G.H.G.
10.699.212.4At3g49660824128transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:G-protein coupled receptor protein signaling pathway;C:chloroplast, heterotrimeric G-protein complex;MFOPBAVO.I.C.G.H.G.
10.599.268.0At3g5866082503560S ribosomal protein-relatedF:structural constituent of ribosome, RNA binding;P:translation, RNA processing;C:nucleolus, membrane;MOFPBAVO.I.C.G.H.G.
10.599.263.3At4g02790828174GTP-binding family proteinF:GTP binding;P:biological_process unknown;C:intracellular, chloroplast;BOMFPAO.I.C.G.H.G.
10.599.225.4At2g4001081858960S acidic ribosomal protein P0 (RPP0A)F:structural constituent of ribosome;P:translational elongation, translation, ribosome biogenesis;C:cytosolic ribosome, ribosome;MOAFPBO.I.C.G.H.G.
10.599.220.2At5g46690834712bHLH071 (beta HLH protein 71)F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFOMO.I.C.G.H.G.
10.499.235.6At5g40830834083methyltransferaseF:methyltransferase activity;P:metabolic process;C:unknown;PBOO.I.C.G.H.G.
10.499.215.2At4g16750827379DRE-binding transcription factor, putativeencodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.O.I.C.G.H.G.
10.399.281.5At2g3760081833760S ribosomal protein L36 (RPL36A)F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome;MOPFO.I.C.G.H.G.
10.299.225.4At5g54530835541unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
10.299.213.1At1g18090838389exonuclease, putativeF:DNA binding, catalytic activity, nuclease activity;P:DNA repair;C:cellular_component unknown;MOFAPBVO.I.C.G.H.G.
10.299.28.5At3g27920822415ATMYB0 (MYB DOMAIN PROTEIN 0)Encodes a Myb-like protein that is required for induction of trichome development.O.I.C.G.H.G.
10.199.270.5At5g64620836583C/VIF2 (CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 2)Plant cell wall (CWI) and vacuolar invertases (VI) play important roles in carbohydrate metabolism, stress responses and sugar signaling.O.I.C.G.H.G.
10.099.295.7At5g10390830903histone H3F:DNA binding;P:nucleosome assembly;C:nucleus, chloroplast, nucleosome;MFPOO.I.C.G.H.G.
10.099.250.3At2g35020818066UTP--glucose-1-phosphate uridylyltransferase family proteinF:nucleotidyltransferase activity;P:metabolic process;C:cellular_component unknown;MFOBPO.I.C.G.H.G.
10.099.240.0At3g61100825282unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
10.099.222.4At5g65900836719DEAD/DEAH box helicase, putativeF:helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding;P:unknown;C:cellular_component unknown;MOBFPVAO.I.C.G.H.G.
9.999.116.9At3g21300821684RNA methyltransferase family proteinF:methyltransferase activity, RNA binding, RNA methyltransferase activity;P:RNA processing;C:unknown;BOMFAPVO.I.C.G.H.G.
9.999.113.9At3g52550824421-F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFPVBO.I.C.G.H.G.
9.999.17.2At4g17860827509unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;PFO.I.C.G.H.G.
9.899.119.3At3g21950821753methyltransferaseF:methyltransferase activity;P:response to cadmium ion;C:cellular_component unknown;POBMFO.I.C.G.H.G.
9.899.19.3At1g51080841530unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOPFO.I.C.G.H.G.
9.799.123.9At1g12020837754unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;POO.I.C.G.H.G.
9.699.154.7At5g14050831254transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;BMOFPAVO.I.C.G.H.G.
9.699.142.8At3g15680820811zinc finger (Ran-binding) family proteinF:binding, zinc ion binding;P:biological_process unknown;C:intracellular;MPOFBO.I.C.G.H.G.
9.699.138.4At4g34740829626ATASE2 (GLN PHOSPHORIBOSYL PYROPHOSPHATE AMIDOTRANSFERASE 2)Encodes glutamine 5-phosphoribosylpyrophosphate amidotransferase. Mutants are deficient in leaf, but not cotyledon, plastid and palisade cell development. Mutants exhibit defective chloroplast development under non-low light, suggesting that the defect in chloroplast development is caused by photo-oxidative damage.O.I.C.G.H.G.
9.699.19.6At1g69550843291disease resistance protein (TIR-NBS class), putativeF:transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, endomembrane system;PBOMFO.I.C.G.H.G.
9.599.165.3At1g10522837593unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
9.599.162.5At5g63050836425EMB2759 (embryo defective 2759)F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:unknown;PO.I.C.G.H.G.
9.599.120.3At3g15030820732TCP4 (TCP family transcription factor 4)Arabidopsis thaliana TCP family transcription factor. Regulated by miR319. Involved in heterchronic regulation of leaf differentiation.O.I.C.G.H.G.
9.499.114.7At3g01140821209MYB106 (myb domain protein 106)Encodes a putative transcription factor that is a member of the MYB family. Loss of function mutations show an increased number of branchpoints in leaf trichomes suggesting a role in negative regulation of trichome branching.O.I.C.G.H.G.
9.399.156.1At5g10920830959argininosuccinate lyase, putative / arginosuccinase, putativeF:argininosuccinate lyase activity, catalytic activity;P:arginine biosynthetic process via ornithine, arginine biosynthetic process;C:chloroplast, chloroplast stroma;BOAMFPO.I.C.G.H.G.
9.399.144.8At3g07050819890GTP-binding family proteinF:GTP binding;P:biological_process unknown;C:nucleolus;BMOFPAVO.I.C.G.H.G.
9.399.124.6At1g49650841389cell death associated protein-relatedF:hydrolase activity;P:metabolic process;C:unknown;BOPFMAVO.I.C.G.H.G.
9.299.150.2At3g10270820189ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)Protein targeting to mitochondria is influenced by UTR sequences.O.I.C.G.H.G.
9.299.145.1At4g28210828936emb1923 (embryo defective 1923)F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:chloroplast;PO.I.C.G.H.G.
9.299.124.9At1g51100841533unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast, chloroplast stroma;PO.I.C.G.H.G.
9.299.115.8At5g43080834324CYCA3F:cyclin-dependent protein kinase regulator activity;P:regulation of cell cycle;C:nucleus;MPOFVO.I.C.G.H.G.



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