CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM131706

Assay name ATGE_84_A

GSE experiment GSE5634: AtGenExpress: Developmental series (siliques and seeds)

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
598.6 100.0 447.4 At2g42560 818856 late embryogenesis abundant domain-containing protein / LEA domain-containing protein F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;BOMPFVA O.I. C.G. H.G.
567.5 100.0 262.5 At3g22500 821821 ATECP31 late embryogenesis abundant (LEA) protein O.I. C.G. H.G.
547.3 100.0 196.7 At5g55750 835669 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBVA O.I. C.G. H.G.
483.0 100.0 273.9 At4g09610 826546 GASA2 (GAST1 PROTEIN HOMOLOG 2) F:molecular_function unknown;P:response to gibberellin stimulus;C:endomembrane system;P O.I. C.G. H.G.
473.7 100.0 93.2 At3g61040 825276 CYP76C7 encodes a protein with cytochrome P450 domain O.I. C.G. H.G.
450.0 100.0 501.1 At3g05260 819690 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV O.I. C.G. H.G.
421.8 100.0 278.3 At1g02700 839492 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PMFO O.I. C.G. H.G.
416.7 100.0 363.3 At3g12960 820482 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
410.5 100.0 241.6 At2g33520 817917 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMF O.I. C.G. H.G.
403.4 100.0 364.0 At4g21020 827849 late embryogenesis abundant domain-containing protein / LEA domain-containing protein F:unknown;P:embryonic development ending in seed dormancy;C:unknown;OMBPFVA O.I. C.G. H.G.
394.2 100.0 313.9 At3g58450 825014 universal stress protein (USP) family protein F:molecular_function unknown;P:response to stress;C:cellular_component unknown;BPAOFM O.I. C.G. H.G.
383.1 100.0 163.1 At2g23640 816896 reticulon family protein (RTNLB13) F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;MPO O.I. C.G. H.G.
382.3 100.0 226.4 At1g75490 843885 DNA binding / transcription factor encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought. O.I. C.G. H.G.
380.4 100.0 294.0 At1g27990 839692 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
350.1 100.0 117.6 At4g18650 827599 transcription factor-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PM O.I. C.G. H.G.
349.9 100.0 36.9 At1g26400 839182 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;FBPOAM O.I. C.G. H.G.
345.5 100.0 350.2 At3g11050 820276 ATFER2 (ferritin 2) F:oxidoreductase activity, ferric iron binding, binding, transition metal ion binding;P:response to oxidative stress, cellular iron ion homeostasis, response to abscisic acid stimulus, iron ion transport;C:chloroplast;MBPOAF O.I. C.G. H.G.
344.1 100.0 224.6 At2g23110 816843 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
340.8 100.0 476.3 At5g45690 834608 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPF O.I. C.G. H.G.
332.2 100.0 259.4 At4g10020 826593 AtHSD5 (hydroxysteroid dehydrogenase 5) F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endomembrane system;BOMFPAV O.I. C.G. H.G.
330.2 100.0 228.5 At3g18570 821388 glycine-rich protein / oleosin F:molecular_function unknown;P:lipid storage;C:monolayer-surrounded lipid storage body, integral to membrane, membrane;P O.I. C.G. H.G.
328.5 100.0 92.8 At1g70985 843437 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PMBFOVA O.I. C.G. H.G.
317.8 100.0 582.4 At1g05510 837053 - Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. O.I. C.G. H.G.
315.6 100.0 372.4 At5g01670 831701 aldose reductase, putative F:oxidoreductase activity;P:oxidation reduction;C:unknown;BMOFPA O.I. C.G. H.G.
314.6 100.0 190.0 At4g27530 828862 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
314.4 100.0 386.1 At3g56350 824802 superoxide dismutase (Mn), putative / manganese superoxide dismutase, putative F:superoxide dismutase activity, metal ion binding;P:superoxide metabolic process, removal of superoxide radicals;C:mitochondrion, endomembrane system;BOFMPAV O.I. C.G. H.G.
310.7 100.0 164.2 At1g29680 839845 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPF O.I. C.G. H.G.
309.0 100.0 539.8 At5g57550 835859 XTR3 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 3) xyloglucan endotransglycosylase-related protein (XTR3) O.I. C.G. H.G.
307.1 100.0 311.6 At5g22470 832308 NAD+ ADP-ribosyltransferase F:NAD+ ADP-ribosyltransferase activity;P:protein amino acid ADP-ribosylation;C:intracellular, nucleus;MOPFBV O.I. C.G. H.G.
307.0 100.0 340.4 At3g21370 821691 BGLU19 (BETA GLUCOSIDASE 19) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA O.I. C.G. H.G.
304.4 100.0 121.1 At5g42290 834234 transcription activator-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
304.3 100.0 85.7 At5g66110 836743 metal ion binding F:metal ion binding;P:metal ion transport;C:plasma membrane;PFM O.I. C.G. H.G.
301.2 100.0 205.2 At5g55240 835617 caleosin-related family protein / embryo-specific protein, putative F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;PFO O.I. C.G. H.G.
300.8 100.0 363.8 At3g50980 824262 XERO1 (DEHYDRIN XERO 1) F:molecular_function unknown;P:response to water, response to stress;C:cellular_component unknown;PM O.I. C.G. H.G.
300.5 100.0 246.5 At4g09600 826545 GASA3 (GAST1 PROTEIN HOMOLOG 3) One of GASA gene family which is related to a GA-stimulated transcript (GAST) from tomato. O.I. C.G. H.G.
292.7 100.0 479.4 At1g17810 838359 BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN) beta-tonoplast intrinsic protein (beta-TIP) mRNA, complete O.I. C.G. H.G.
291.9 100.0 209.2 At2g19900 816509 ATNADP-ME1 (NADP-malic enzyme 1) The malic enzyme (EC 1.1.1.40) encoded by AtNADP-ME1 is expressed in response to developmental and cell-specific signals. O.I. C.G. H.G.
283.2 100.0 106.8 At5g43770 834399 proline-rich family protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MBPOFVA O.I. C.G. H.G.
280.9 100.0 91.1 At2g19320 816449 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
273.7 100.0 410.2 At2g40170 818608 GEA6 (LATE EMBRYOGENESIS ABUNDANT 6) Encodes a group 1 LEA gene that is activated by direct binding of ABI5 to its promoter and is involved in response to ABA. Is required for normal seed development. Involved in regulating the timing of dessication tolerance and rate of water loss during seed maturation. O.I. C.G. H.G.
271.9 100.0 135.5 At2g42000 818800 plant EC metallothionein-like family 15 protein F:zinc ion binding;P:biological_process unknown;C:unknown;PMOBF O.I. C.G. H.G.
254.9 100.0 323.9 At2g33070 817869 NSP2 (NITRILE SPECIFIER PROTEIN 2) Encodes a nitrile-specifier protein NSP2. NSP2 is one out of five (At3g16400/NSP1, At2g33070/NSP2, At3g16390/NSP3, At3g16410/NSP4 and At5g48180/NSP5) A. thaliana epithiospecifier protein (ESP) homologues that promote simple nitrile, but not epithionitrile or thiocyanate formation. O.I. C.G. H.G.
252.6 100.0 355.9 At2g41280 818727 M10 Encodes a hydrophilic protein similar to Late Embryogenesis Activated (LEA) proteins expressed during embryogenesis, which are thought to be involved in the acquisition of dessication tolerance. O.I. C.G. H.G.
249.2 100.0 111.1 At5g45830 834623 DOG1 (DELAY OF GERMINATION 1) Encodes DOG1 (DELAY OF GERMINATION 1). A quantitative trait locus involved in the control of seed dormancy. Belongs to a novel plant-specific gene family whose members include: DOG1-like 1-4 (DOGL1-4, At4g18660, At4g18680, At4g18690, At4g18650 respectively) and DOG1. DOG1 expression is seed-specific. O.I. C.G. H.G.
249.0 100.0 167.9 At1g72100 843541 late embryogenesis abundant domain-containing protein / LEA domain-containing protein F:unknown;P:embryonic development ending in seed dormancy;C:endomembrane system;BPOMFAV O.I. C.G. H.G.
246.8 100.0 216.5 At1g14930 838058 major latex protein-related / MLP-related F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P O.I. C.G. H.G.
244.6 100.0 491.9 At1g54870 841926 binding / catalytic/ oxidoreductase F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:chloroplast;BOMFPAV O.I. C.G. H.G.
238.5 100.0 383.2 At4g16160 827308 mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein Homologous to pea OEP16 and barley pPORA (OEP16), a member of Arabidopsis OEP16 family. Two OEP16 genes are closely related to each other and are conserved in all land plants, OEP16-2, also named OEP16-S, and OEP16-1 (renamed OEP16-L) are result of the gene duplication event that occurred prior to divergence of bryophytes and seed plants. Predominantly expressed in seed and is not inducible by cold treatment. atOEP16-S gained an additional exon. The promoter region of atOEP16-S (but not atOEP16-L) contains multiple G-box ABA-responsive elements. The atOEP16-S promoter conferred developmentally regulated seed- and pollen-specific GUS expression in tobacco. O.I. C.G. H.G.
237.4 100.0 577.4 At5g50600 835129 AtHSD1 (hydroxysteroid dehydrogenase 1) F:oxidoreductase activity, binding, catalytic activity;P:response to brassinosteroid stimulus, response to abscisic acid stimulus;C:endomembrane system;BOMFPAV O.I. C.G. H.G.
236.1 100.0 450.3 At3g17520 821017 late embryogenesis abundant domain-containing protein / LEA domain-containing protein F:unknown;P:embryonic development ending in seed dormancy;C:endomembrane system;MOBFPVA O.I. C.G. H.G.
233.7 100.0 138.6 At5g60760 836197 2-phosphoglycerate kinase-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPBAFV O.I. C.G. H.G.
233.3 100.0 491.0 At1g54860 841925 unknown protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P O.I. C.G. H.G.
230.6 100.0 342.5 At5g07330 830624 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P O.I. C.G. H.G.
229.6 100.0 579.5 At1g14950 838060 major latex protein-related / MLP-related F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P O.I. C.G. H.G.
227.5 100.0 138.3 At5g45310 834567 unknown protein F:unknown;P:unknown;C:endomembrane system;OMVBFPA O.I. C.G. H.G.
225.1 100.0 310.4 At3g51810 824344 EM1 (LATE EMBRYOGENESIS ABUNDANT 1) Encodes a ABA-inducible protein that accumulates during seed maturation, in parallel with its corresponding mRNA but with a 3 d delay. During germination, AtEm1 protein undergoes two successive cleavages before being degraded. Both proteins are more stable than the corresponding mRNA. The gene can be activated by the basic leucine zipper transcription factor ABI5. Expressed predominantly in provascular tissues with the strongest expression in the root tip. O.I. C.G. H.G.
221.4 100.0 284.3 At2g25890 817130 glycine-rich protein / oleosin F:molecular_function unknown;P:lipid storage;C:monolayer-surrounded lipid storage body, integral to membrane, membrane;PB O.I. C.G. H.G.
221.0 100.0 454.1 At2g21490 816688 LEA (DEHYDRIN LEA) F:molecular_function unknown;P:response to water, response to stress;C:cellular_component unknown;PMFOBV O.I. C.G. H.G.
220.6 100.0 242.9 At4g31830 829312 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
219.3 100.0 322.3 At5g01300 830983 phosphatidylethanolamine-binding family protein F:phosphatidylethanolamine binding;P:biological_process unknown;C:cellular_component unknown;BOAPF O.I. C.G. H.G.
217.0 100.0 156.4 At1g07500 837264 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
216.5 100.0 200.5 At2g28420 817390 lactoylglutathione lyase family protein / glyoxalase I family protein F:lactoylglutathione lyase activity;P:carbohydrate metabolic process;C:cellular_component unknown;BOPMFA O.I. C.G. H.G.
212.4 100.0 247.2 At3g53040 824470 late embryogenesis abundant protein, putative / LEA protein, putative F:unknown;P:embryonic development ending in seed dormancy;C:unknown;MBOFPAV O.I. C.G. H.G.
208.0 100.0 93.8 At3g22490 821820 late embryogenesis abundant protein, putative / LEA protein, putative F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;PBMVAO O.I. C.G. H.G.
207.6 100.0 59.3 At2g34315 817993 disease resistance protein-related F:GTP binding;P:biological_process unknown;C:cellular_component unknown;PMF O.I. C.G. H.G.
207.0 100.0 201.6 At1g03790 839408 SOM (SOMNUS) Encodes SOMNUS (SOM), a nucleus-localized CCCH-type zinc finger protein. SOM negatively regulates light-dependent seed germination downstream of PIL5 (AT2G20180). O.I. C.G. H.G.
206.0 100.0 161.7 At3g15280 820759 unknown protein F:molecular_function unknown;P:unknown;C:mitochondrion;PM O.I. C.G. H.G.
205.5 100.0 585.7 At1g73190 843653 TIP3 Moves to the Protein Storage Vacuole in a Golgi independent manner O.I. C.G. H.G.
196.6 100.0 321.6 At2g21820 816718 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
194.0 100.0 470.5 At2g47770 819389 benzodiazepine receptor-related F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;BMOPAF O.I. C.G. H.G.
192.8 100.0 146.9 At4g02280 828081 SUS3 (sucrose synthase 3) Encodes a protein with sucrose synthase activity (SUS3). O.I. C.G. H.G.
188.7 100.0 464.8 At1g03890 839379 cupin family protein F:nutrient reservoir activity;P:biological_process unknown;C:endomembrane system;PBMO O.I. C.G. H.G.
185.1 100.0 646.6 At3g15670 820810 late embryogenesis abundant protein, putative / LEA protein, putative F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:nucleus;BOMPFVA O.I. C.G. H.G.
184.7 100.0 111.7 At5g47810 834832 PFK2 (PHOSPHOFRUCTOKINASE 2) F:6-phosphofructokinase activity;P:glycolysis;C:cytosol, 6-phosphofructokinase complex;BOMFPAV O.I. C.G. H.G.
181.4 100.0 44.7 At5g54000 835483 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;POBFM O.I. C.G. H.G.
180.2 100.0 186.7 At1g19540 838541 isoflavone reductase, putative F:transcription repressor activity, binding, catalytic activity;P:regulation of nitrogen utilization, metabolic process;C:cellular_component unknown;BPFOVMA O.I. C.G. H.G.
176.5 100.0 417.0 At5g07190 830610 ATS3 (ARABIDOPSIS THALIANA SEED GENE 3) Gene is expressed preferentially in the embryo and encodes a unique protein of unknown function. O.I. C.G. H.G.
174.5 100.0 571.7 At5g59170 836035 proline-rich family protein F:unknown;P:unknown;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
173.9 100.0 260.9 At1g14940 838059 major latex protein-related / MLP-related F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P O.I. C.G. H.G.
172.1 100.0 330.7 At4g26740 828781 ATS1 (ARABIDOPSIS THALIANA SEED GENE 1) Gene is expressed preferentially in the embryo, has similarity to a rice ABA-responsive gene, EFA27. O.I. C.G. H.G.
171.6 100.0 47.9 At4g22100 828299 BGLU3 (BETA GLUCOSIDASE 2) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA O.I. C.G. H.G.
170.3 100.0 41.8 At5g16460 831507 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFO O.I. C.G. H.G.
169.4 100.0 64.2 At5g65550 836681 UDP-glucoronosyl/UDP-glucosyl transferase family protein F:transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBVOF O.I. C.G. H.G.
169.1 100.0 394.8 At5g06760 830565 late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein F:molecular_function unknown;P:embryonic development ending in seed dormancy, embryonic development;C:cellular_component unknown;PMBOFV O.I. C.G. H.G.
169.0 100.0 605.5 At3g27660 822388 OLEO4 (OLEOSIN 4) Encodes oleosin4 (Plant Cell, 2006, 18:1961), a protein found in oil bodies, involved in seed lipid accumulation. Functions in freezing tolerance of seeds. Note: also referred to as OLE3 in Plant Journal 2008, 55:798. O.I. C.G. H.G.
167.7 100.0 71.5 At1g24735 839082 O-methyltransferase F:O-methyltransferase activity;P:unknown;C:cytosol;BOPMFA O.I. C.G. H.G.
167.5 100.0 144.8 At3g21380 821692 - F:unknown;P:unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
166.6 100.0 56.9 At1g08170 837338 histone H2B family protein F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MPOFB O.I. C.G. H.G.
166.5 100.0 564.3 At2g28490 817397 cupin family protein F:nutrient reservoir activity;P:biological_process unknown;C:endomembrane system;BMPOFVA O.I. C.G. H.G.
166.5 100.0 470.4 At1g32560 840150 late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein F:molecular_function unknown;P:embryonic development ending in seed dormancy, embryonic development;C:cellular_component unknown;PMO O.I. C.G. H.G.
165.1 100.0 612.9 At3g22640 821835 PAP85 F:nutrient reservoir activity;P:biological_process unknown;C:plant-type cell wall;POM O.I. C.G. H.G.
164.3 99.9 55.8 At5g64190 836540 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
162.5 99.9 46.7 At5g04500 830329 glycosyltransferase family protein 47 a member of the Glycosyltransferase Family 64 (according to CAZy Database) O.I. C.G. H.G.
159.3 99.9 74.5 At1g22600 838866 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPF O.I. C.G. H.G.
148.1 99.9 329.0 At5g62490 836369 ATHVA22B Part of the AtHVA22 family. Protein expression is ABA- and stress-inducible. O.I. C.G. H.G.
148.0 99.9 312.1 At2g38905 818475 hydrophobic protein, putative / low temperature and salt responsive protein, putative F:unknown;P:hyperosmotic salinity response, response to cold;C:endomembrane system, integral to membrane;BFPMO O.I. C.G. H.G.
147.2 99.9 93.4 At5g50360 835103 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PO O.I. C.G. H.G.
146.6 99.9 152.0 At4g18425 827573 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
144.0 99.9 553.2 At3g01570 821106 glycine-rich protein / oleosin F:molecular_function unknown;P:lipid storage;C:monolayer-surrounded lipid storage body, integral to membrane, membrane;P O.I. C.G. H.G.
139.6 99.9 30.7 At2g25340 817072 ATVAMP712 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 712) Member of Synaptobrevin-like AtVAMP7C, v-SNARE protein family. O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
598.6	100.0	447.4	At2g42560	818856	late embryogenesis abundant domain-containing protein / LEA domain-containing protein	F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;BOMPFVA	O.I.	C.G.	H.G.
567.5	100.0	262.5	At3g22500	821821	ATECP31	late embryogenesis abundant (LEA) protein	O.I.	C.G.	H.G.
547.3	100.0	196.7	At5g55750	835669	hydroxyproline-rich glycoprotein family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBVA	O.I.	C.G.	H.G.
483.0	100.0	273.9	At4g09610	826546	GASA2 (GAST1 PROTEIN HOMOLOG 2)	F:molecular_function unknown;P:response to gibberellin stimulus;C:endomembrane system;P	O.I.	C.G.	H.G.
473.7	100.0	93.2	At3g61040	825276	CYP76C7	encodes a protein with cytochrome P450 domain	O.I.	C.G.	H.G.
450.0	100.0	501.1	At3g05260	819690	short-chain dehydrogenase/reductase (SDR) family protein	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV	O.I.	C.G.	H.G.
421.8	100.0	278.3	At1g02700	839492	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PMFO	O.I.	C.G.	H.G.
416.7	100.0	363.3	At3g12960	820482	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
410.5	100.0	241.6	At2g33520	817917	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMF	O.I.	C.G.	H.G.
403.4	100.0	364.0	At4g21020	827849	late embryogenesis abundant domain-containing protein / LEA domain-containing protein	F:unknown;P:embryonic development ending in seed dormancy;C:unknown;OMBPFVA	O.I.	C.G.	H.G.
394.2	100.0	313.9	At3g58450	825014	universal stress protein (USP) family protein	F:molecular_function unknown;P:response to stress;C:cellular_component unknown;BPAOFM	O.I.	C.G.	H.G.
383.1	100.0	163.1	At2g23640	816896	reticulon family protein (RTNLB13)	F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;MPO	O.I.	C.G.	H.G.
382.3	100.0	226.4	At1g75490	843885	DNA binding / transcription factor	encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought.	O.I.	C.G.	H.G.
380.4	100.0	294.0	At1g27990	839692	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
350.1	100.0	117.6	At4g18650	827599	transcription factor-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PM	O.I.	C.G.	H.G.
349.9	100.0	36.9	At1g26400	839182	FAD-binding domain-containing protein	F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;FBPOAM	O.I.	C.G.	H.G.
345.5	100.0	350.2	At3g11050	820276	ATFER2 (ferritin 2)	F:oxidoreductase activity, ferric iron binding, binding, transition metal ion binding;P:response to oxidative stress, cellular iron ion homeostasis, response to abscisic acid stimulus, iron ion transport;C:chloroplast;MBPOAF	O.I.	C.G.	H.G.
344.1	100.0	224.6	At2g23110	816843	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
340.8	100.0	476.3	At5g45690	834608	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPF	O.I.	C.G.	H.G.
332.2	100.0	259.4	At4g10020	826593	AtHSD5 (hydroxysteroid dehydrogenase 5)	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endomembrane system;BOMFPAV	O.I.	C.G.	H.G.
330.2	100.0	228.5	At3g18570	821388	glycine-rich protein / oleosin	F:molecular_function unknown;P:lipid storage;C:monolayer-surrounded lipid storage body, integral to membrane, membrane;P	O.I.	C.G.	H.G.
328.5	100.0	92.8	At1g70985	843437	hydroxyproline-rich glycoprotein family protein	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PMBFOVA	O.I.	C.G.	H.G.
317.8	100.0	582.4	At1g05510	837053	-	Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.	O.I.	C.G.	H.G.
315.6	100.0	372.4	At5g01670	831701	aldose reductase, putative	F:oxidoreductase activity;P:oxidation reduction;C:unknown;BMOFPA	O.I.	C.G.	H.G.
314.6	100.0	190.0	At4g27530	828862	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
314.4	100.0	386.1	At3g56350	824802	superoxide dismutase (Mn), putative / manganese superoxide dismutase, putative	F:superoxide dismutase activity, metal ion binding;P:superoxide metabolic process, removal of superoxide radicals;C:mitochondrion, endomembrane system;BOFMPAV	O.I.	C.G.	H.G.
310.7	100.0	164.2	At1g29680	839845	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPF	O.I.	C.G.	H.G.
309.0	100.0	539.8	At5g57550	835859	XTR3 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 3)	xyloglucan endotransglycosylase-related protein (XTR3)	O.I.	C.G.	H.G.
307.1	100.0	311.6	At5g22470	832308	NAD+ ADP-ribosyltransferase	F:NAD+ ADP-ribosyltransferase activity;P:protein amino acid ADP-ribosylation;C:intracellular, nucleus;MOPFBV	O.I.	C.G.	H.G.
307.0	100.0	340.4	At3g21370	821691	BGLU19 (BETA GLUCOSIDASE 19)	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA	O.I.	C.G.	H.G.
304.4	100.0	121.1	At5g42290	834234	transcription activator-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
304.3	100.0	85.7	At5g66110	836743	metal ion binding	F:metal ion binding;P:metal ion transport;C:plasma membrane;PFM	O.I.	C.G.	H.G.
301.2	100.0	205.2	At5g55240	835617	caleosin-related family protein / embryo-specific protein, putative	F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;PFO	O.I.	C.G.	H.G.
300.8	100.0	363.8	At3g50980	824262	XERO1 (DEHYDRIN XERO 1)	F:molecular_function unknown;P:response to water, response to stress;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
300.5	100.0	246.5	At4g09600	826545	GASA3 (GAST1 PROTEIN HOMOLOG 3)	One of GASA gene family which is related to a GA-stimulated transcript (GAST) from tomato.	O.I.	C.G.	H.G.
292.7	100.0	479.4	At1g17810	838359	BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN)	beta-tonoplast intrinsic protein (beta-TIP) mRNA, complete	O.I.	C.G.	H.G.
291.9	100.0	209.2	At2g19900	816509	ATNADP-ME1 (NADP-malic enzyme 1)	The malic enzyme (EC 1.1.1.40) encoded by AtNADP-ME1 is expressed in response to developmental and cell-specific signals.	O.I.	C.G.	H.G.
283.2	100.0	106.8	At5g43770	834399	proline-rich family protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MBPOFVA	O.I.	C.G.	H.G.
280.9	100.0	91.1	At2g19320	816449	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
273.7	100.0	410.2	At2g40170	818608	GEA6 (LATE EMBRYOGENESIS ABUNDANT 6)	Encodes a group 1 LEA gene that is activated by direct binding of ABI5 to its promoter and is involved in response to ABA. Is required for normal seed development. Involved in regulating the timing of dessication tolerance and rate of water loss during seed maturation.	O.I.	C.G.	H.G.
271.9	100.0	135.5	At2g42000	818800	plant EC metallothionein-like family 15 protein	F:zinc ion binding;P:biological_process unknown;C:unknown;PMOBF	O.I.	C.G.	H.G.
254.9	100.0	323.9	At2g33070	817869	NSP2 (NITRILE SPECIFIER PROTEIN 2)	Encodes a nitrile-specifier protein NSP2. NSP2 is one out of five (At3g16400/NSP1, At2g33070/NSP2, At3g16390/NSP3, At3g16410/NSP4 and At5g48180/NSP5) A. thaliana epithiospecifier protein (ESP) homologues that promote simple nitrile, but not epithionitrile or thiocyanate formation.	O.I.	C.G.	H.G.
252.6	100.0	355.9	At2g41280	818727	M10	Encodes a hydrophilic protein similar to Late Embryogenesis Activated (LEA) proteins expressed during embryogenesis, which are thought to be involved in the acquisition of dessication tolerance.	O.I.	C.G.	H.G.
249.2	100.0	111.1	At5g45830	834623	DOG1 (DELAY OF GERMINATION 1)	Encodes DOG1 (DELAY OF GERMINATION 1). A quantitative trait locus involved in the control of seed dormancy. Belongs to a novel plant-specific gene family whose members include: DOG1-like 1-4 (DOGL1-4, At4g18660, At4g18680, At4g18690, At4g18650 respectively) and DOG1. DOG1 expression is seed-specific.	O.I.	C.G.	H.G.
249.0	100.0	167.9	At1g72100	843541	late embryogenesis abundant domain-containing protein / LEA domain-containing protein	F:unknown;P:embryonic development ending in seed dormancy;C:endomembrane system;BPOMFAV	O.I.	C.G.	H.G.
246.8	100.0	216.5	At1g14930	838058	major latex protein-related / MLP-related	F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P	O.I.	C.G.	H.G.
244.6	100.0	491.9	At1g54870	841926	binding / catalytic/ oxidoreductase	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:chloroplast;BOMFPAV	O.I.	C.G.	H.G.
238.5	100.0	383.2	At4g16160	827308	mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein	Homologous to pea OEP16 and barley pPORA (OEP16), a member of Arabidopsis OEP16 family. Two OEP16 genes are closely related to each other and are conserved in all land plants, OEP16-2, also named OEP16-S, and OEP16-1 (renamed OEP16-L) are result of the gene duplication event that occurred prior to divergence of bryophytes and seed plants. Predominantly expressed in seed and is not inducible by cold treatment. atOEP16-S gained an additional exon. The promoter region of atOEP16-S (but not atOEP16-L) contains multiple G-box ABA-responsive elements. The atOEP16-S promoter conferred developmentally regulated seed- and pollen-specific GUS expression in tobacco.	O.I.	C.G.	H.G.
237.4	100.0	577.4	At5g50600	835129	AtHSD1 (hydroxysteroid dehydrogenase 1)	F:oxidoreductase activity, binding, catalytic activity;P:response to brassinosteroid stimulus, response to abscisic acid stimulus;C:endomembrane system;BOMFPAV	O.I.	C.G.	H.G.
236.1	100.0	450.3	At3g17520	821017	late embryogenesis abundant domain-containing protein / LEA domain-containing protein	F:unknown;P:embryonic development ending in seed dormancy;C:endomembrane system;MOBFPVA	O.I.	C.G.	H.G.
233.7	100.0	138.6	At5g60760	836197	2-phosphoglycerate kinase-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPBAFV	O.I.	C.G.	H.G.
233.3	100.0	491.0	At1g54860	841925	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
230.6	100.0	342.5	At5g07330	830624	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P	O.I.	C.G.	H.G.
229.6	100.0	579.5	At1g14950	838060	major latex protein-related / MLP-related	F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P	O.I.	C.G.	H.G.
227.5	100.0	138.3	At5g45310	834567	unknown protein	F:unknown;P:unknown;C:endomembrane system;OMVBFPA	O.I.	C.G.	H.G.
225.1	100.0	310.4	At3g51810	824344	EM1 (LATE EMBRYOGENESIS ABUNDANT 1)	Encodes a ABA-inducible protein that accumulates during seed maturation, in parallel with its corresponding mRNA but with a 3 d delay. During germination, AtEm1 protein undergoes two successive cleavages before being degraded. Both proteins are more stable than the corresponding mRNA. The gene can be activated by the basic leucine zipper transcription factor ABI5. Expressed predominantly in provascular tissues with the strongest expression in the root tip.	O.I.	C.G.	H.G.
221.4	100.0	284.3	At2g25890	817130	glycine-rich protein / oleosin	F:molecular_function unknown;P:lipid storage;C:monolayer-surrounded lipid storage body, integral to membrane, membrane;PB	O.I.	C.G.	H.G.
221.0	100.0	454.1	At2g21490	816688	LEA (DEHYDRIN LEA)	F:molecular_function unknown;P:response to water, response to stress;C:cellular_component unknown;PMFOBV	O.I.	C.G.	H.G.
220.6	100.0	242.9	At4g31830	829312	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
219.3	100.0	322.3	At5g01300	830983	phosphatidylethanolamine-binding family protein	F:phosphatidylethanolamine binding;P:biological_process unknown;C:cellular_component unknown;BOAPF	O.I.	C.G.	H.G.
217.0	100.0	156.4	At1g07500	837264	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
216.5	100.0	200.5	At2g28420	817390	lactoylglutathione lyase family protein / glyoxalase I family protein	F:lactoylglutathione lyase activity;P:carbohydrate metabolic process;C:cellular_component unknown;BOPMFA	O.I.	C.G.	H.G.
212.4	100.0	247.2	At3g53040	824470	late embryogenesis abundant protein, putative / LEA protein, putative	F:unknown;P:embryonic development ending in seed dormancy;C:unknown;MBOFPAV	O.I.	C.G.	H.G.
208.0	100.0	93.8	At3g22490	821820	late embryogenesis abundant protein, putative / LEA protein, putative	F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;PBMVAO	O.I.	C.G.	H.G.
207.6	100.0	59.3	At2g34315	817993	disease resistance protein-related	F:GTP binding;P:biological_process unknown;C:cellular_component unknown;PMF	O.I.	C.G.	H.G.
207.0	100.0	201.6	At1g03790	839408	SOM (SOMNUS)	Encodes SOMNUS (SOM), a nucleus-localized CCCH-type zinc finger protein. SOM negatively regulates light-dependent seed germination downstream of PIL5 (AT2G20180).	O.I.	C.G.	H.G.
206.0	100.0	161.7	At3g15280	820759	unknown protein	F:molecular_function unknown;P:unknown;C:mitochondrion;PM	O.I.	C.G.	H.G.
205.5	100.0	585.7	At1g73190	843653	TIP3	Moves to the Protein Storage Vacuole in a Golgi independent manner	O.I.	C.G.	H.G.
196.6	100.0	321.6	At2g21820	816718	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
194.0	100.0	470.5	At2g47770	819389	benzodiazepine receptor-related	F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;BMOPAF	O.I.	C.G.	H.G.
192.8	100.0	146.9	At4g02280	828081	SUS3 (sucrose synthase 3)	Encodes a protein with sucrose synthase activity (SUS3).	O.I.	C.G.	H.G.
188.7	100.0	464.8	At1g03890	839379	cupin family protein	F:nutrient reservoir activity;P:biological_process unknown;C:endomembrane system;PBMO	O.I.	C.G.	H.G.
185.1	100.0	646.6	At3g15670	820810	late embryogenesis abundant protein, putative / LEA protein, putative	F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:nucleus;BOMPFVA	O.I.	C.G.	H.G.
184.7	100.0	111.7	At5g47810	834832	PFK2 (PHOSPHOFRUCTOKINASE 2)	F:6-phosphofructokinase activity;P:glycolysis;C:cytosol, 6-phosphofructokinase complex;BOMFPAV	O.I.	C.G.	H.G.
181.4	100.0	44.7	At5g54000	835483	oxidoreductase, 2OG-Fe(II) oxygenase family protein	F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;POBFM	O.I.	C.G.	H.G.
180.2	100.0	186.7	At1g19540	838541	isoflavone reductase, putative	F:transcription repressor activity, binding, catalytic activity;P:regulation of nitrogen utilization, metabolic process;C:cellular_component unknown;BPFOVMA	O.I.	C.G.	H.G.
176.5	100.0	417.0	At5g07190	830610	ATS3 (ARABIDOPSIS THALIANA SEED GENE 3)	Gene is expressed preferentially in the embryo and encodes a unique protein of unknown function.	O.I.	C.G.	H.G.
174.5	100.0	571.7	At5g59170	836035	proline-rich family protein	F:unknown;P:unknown;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
173.9	100.0	260.9	At1g14940	838059	major latex protein-related / MLP-related	F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P	O.I.	C.G.	H.G.
172.1	100.0	330.7	At4g26740	828781	ATS1 (ARABIDOPSIS THALIANA SEED GENE 1)	Gene is expressed preferentially in the embryo, has similarity to a rice ABA-responsive gene, EFA27.	O.I.	C.G.	H.G.
171.6	100.0	47.9	At4g22100	828299	BGLU3 (BETA GLUCOSIDASE 2)	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA	O.I.	C.G.	H.G.
170.3	100.0	41.8	At5g16460	831507	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFO	O.I.	C.G.	H.G.
169.4	100.0	64.2	At5g65550	836681	UDP-glucoronosyl/UDP-glucosyl transferase family protein	F:transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBVOF	O.I.	C.G.	H.G.
169.1	100.0	394.8	At5g06760	830565	late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein	F:molecular_function unknown;P:embryonic development ending in seed dormancy, embryonic development;C:cellular_component unknown;PMBOFV	O.I.	C.G.	H.G.
169.0	100.0	605.5	At3g27660	822388	OLEO4 (OLEOSIN 4)	Encodes oleosin4 (Plant Cell, 2006, 18:1961), a protein found in oil bodies, involved in seed lipid accumulation. Functions in freezing tolerance of seeds. Note: also referred to as OLE3 in Plant Journal 2008, 55:798.	O.I.	C.G.	H.G.
167.7	100.0	71.5	At1g24735	839082	O-methyltransferase	F:O-methyltransferase activity;P:unknown;C:cytosol;BOPMFA	O.I.	C.G.	H.G.
167.5	100.0	144.8	At3g21380	821692	-	F:unknown;P:unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
166.6	100.0	56.9	At1g08170	837338	histone H2B family protein	F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MPOFB	O.I.	C.G.	H.G.
166.5	100.0	564.3	At2g28490	817397	cupin family protein	F:nutrient reservoir activity;P:biological_process unknown;C:endomembrane system;BMPOFVA	O.I.	C.G.	H.G.
166.5	100.0	470.4	At1g32560	840150	late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein	F:molecular_function unknown;P:embryonic development ending in seed dormancy, embryonic development;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
165.1	100.0	612.9	At3g22640	821835	PAP85	F:nutrient reservoir activity;P:biological_process unknown;C:plant-type cell wall;POM	O.I.	C.G.	H.G.
164.3	99.9	55.8	At5g64190	836540	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
162.5	99.9	46.7	At5g04500	830329	glycosyltransferase family protein 47	a member of the Glycosyltransferase Family 64 (according to CAZy Database)	O.I.	C.G.	H.G.
159.3	99.9	74.5	At1g22600	838866	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPF	O.I.	C.G.	H.G.
148.1	99.9	329.0	At5g62490	836369	ATHVA22B	Part of the AtHVA22 family. Protein expression is ABA- and stress-inducible.	O.I.	C.G.	H.G.
148.0	99.9	312.1	At2g38905	818475	hydrophobic protein, putative / low temperature and salt responsive protein, putative	F:unknown;P:hyperosmotic salinity response, response to cold;C:endomembrane system, integral to membrane;BFPMO	O.I.	C.G.	H.G.
147.2	99.9	93.4	At5g50360	835103	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PO	O.I.	C.G.	H.G.
146.6	99.9	152.0	At4g18425	827573	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
144.0	99.9	553.2	At3g01570	821106	glycine-rich protein / oleosin	F:molecular_function unknown;P:lipid storage;C:monolayer-surrounded lipid storage body, integral to membrane, membrane;P	O.I.	C.G.	H.G.
139.6	99.9	30.7	At2g25340	817072	ATVAMP712 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 712)	Member of Synaptobrevin-like AtVAMP7C, v-SNARE protein family.	O.I.	C.G.	H.G.

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GSM ID	GSM131706
Assay name	ATGE_84_A
GSE experiment	GSE5634: AtGenExpress: Developmental series (siliques and seeds)

Microarray experiments to specifically-expressed genes

GSM ID GSM131706 Assay name ATGE_84_A GSE experiment GSE5634: AtGenExpress: Developmental series (siliques and seeds)

GSM ID GSM131706

Assay name ATGE_84_A

GSE experiment GSE5634: AtGenExpress: Developmental series (siliques and seeds)