Microarray experiments to specifically-expressed genes

GSM ID GSM131703
Assay name ATGE_83_A
GSE experiment GSE5634: AtGenExpress: Developmental series (siliques and seeds)

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
694.3100.0185.4At5g45830834623DOG1 (DELAY OF GERMINATION 1)Encodes DOG1 (DELAY OF GERMINATION 1). A quantitative trait locus involved in the control of seed dormancy. Belongs to a novel plant-specific gene family whose members include: DOG1-like 1-4 (DOGL1-4, At4g18660, At4g18680, At4g18690, At4g18650 respectively) and DOG1. DOG1 expression is seed-specific.O.I.C.G.H.G.
472.1100.0397.3At2g42560818856late embryogenesis abundant domain-containing protein / LEA domain-containing proteinF:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;BOMPFVAO.I.C.G.H.G.
439.5100.0242.7At1g75490843885DNA binding / transcription factorencodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought.O.I.C.G.H.G.
397.6100.0167.6At5g55750835669hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBVAO.I.C.G.H.G.
392.9100.0468.2At3g05260819690short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAVO.I.C.G.H.G.
392.2100.0212.1At4g27530828862unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
382.9100.0354.6At4g21020827849late embryogenesis abundant domain-containing protein / LEA domain-containing proteinF:unknown;P:embryonic development ending in seed dormancy;C:unknown;OMBPFVAO.I.C.G.H.G.
343.4100.0221.0At2g33520817917-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO.I.C.G.H.G.
338.1100.0385.5At5g01670831701aldose reductase, putativeF:oxidoreductase activity;P:oxidation reduction;C:unknown;BMOFPAO.I.C.G.H.G.
334.5100.0383.7At3g50980824262XERO1 (DEHYDRIN XERO 1)F:molecular_function unknown;P:response to water, response to stress;C:cellular_component unknown;PMO.I.C.G.H.G.
323.7100.0271.2At1g27990839692unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
323.3100.0224.1At4g09610826546GASA2 (GAST1 PROTEIN HOMOLOG 2)F:molecular_function unknown;P:response to gibberellin stimulus;C:endomembrane system;PO.I.C.G.H.G.
316.5100.0335.2At3g11050820276ATFER2 (ferritin 2)F:oxidoreductase activity, ferric iron binding, binding, transition metal ion binding;P:response to oxidative stress, cellular iron ion homeostasis, response to abscisic acid stimulus, iron ion transport;C:chloroplast;MBPOAFO.I.C.G.H.G.
305.0100.074.8At3g61040825276CYP76C7encodes a protein with cytochrome P450 domainO.I.C.G.H.G.
304.8100.0570.4At1g05510837053-Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.O.I.C.G.H.G.
303.2100.0309.9At3g12960820482unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
303.1100.0487.8At1g17810838359BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN)beta-tonoplast intrinsic protein (beta-TIP) mRNA, completeO.I.C.G.H.G.
295.6100.0233.0At1g02700839492unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PMFOO.I.C.G.H.G.
294.7100.0305.2At5g22470832308NAD+ ADP-ribosyltransferaseF:NAD+ ADP-ribosyltransferase activity;P:protein amino acid ADP-ribosylation;C:intracellular, nucleus;MOPFBVO.I.C.G.H.G.
293.7100.0233.6At2g28420817390lactoylglutathione lyase family protein / glyoxalase I family proteinF:lactoylglutathione lyase activity;P:carbohydrate metabolic process;C:cellular_component unknown;BOPMFAO.I.C.G.H.G.
293.3100.0243.6At4g09600826545GASA3 (GAST1 PROTEIN HOMOLOG 3)One of GASA gene family which is related to a GA-stimulated transcript (GAST) from tomato.O.I.C.G.H.G.
284.7100.0185.9At3g22500821821ATECP31late embryogenesis abundant (LEA) proteinO.I.C.G.H.G.
279.4100.0525.8At1g54870841926binding / catalytic/ oxidoreductaseF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:chloroplast;BOMFPAVO.I.C.G.H.G.
277.4100.0155.2At1g29680839845unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPFO.I.C.G.H.G.
271.9100.0103.6At4g18650827599transcription factor-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMO.I.C.G.H.G.
268.7100.0503.4At5g57550835859XTR3 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 3)xyloglucan endotransglycosylase-related protein (XTR3)O.I.C.G.H.G.
263.7100.0256.8At3g58450825014universal stress protein (USP) family proteinF:molecular_function unknown;P:response to stress;C:cellular_component unknown;BPAOFMO.I.C.G.H.G.
262.2100.0198.3At2g19900816509ATNADP-ME1 (NADP-malic enzyme 1)The malic enzyme (EC 1.1.1.40) encoded by AtNADP-ME1 is expressed in response to developmental and cell-specific signals.O.I.C.G.H.G.
261.4100.0605.9At5g50600835129AtHSD1 (hydroxysteroid dehydrogenase 1)F:oxidoreductase activity, binding, catalytic activity;P:response to brassinosteroid stimulus, response to abscisic acid stimulus;C:endomembrane system;BOMFPAVO.I.C.G.H.G.
260.6100.0416.5At5g45690834608unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPFO.I.C.G.H.G.
257.4100.0515.7At1g54860841925unknown proteinF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PO.I.C.G.H.G.
250.8100.0259.0At4g31830829312unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
250.8100.0199.1At3g18570821388glycine-rich protein / oleosinF:molecular_function unknown;P:lipid storage;C:monolayer-surrounded lipid storage body, integral to membrane, membrane;PO.I.C.G.H.G.
246.2100.0679.1At5g59170836035proline-rich family proteinF:unknown;P:unknown;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
244.0100.0340.1At3g56350824802superoxide dismutase (Mn), putative / manganese superoxide dismutase, putativeF:superoxide dismutase activity, metal ion binding;P:superoxide metabolic process, removal of superoxide radicals;C:mitochondrion, endomembrane system;BOFMPAVO.I.C.G.H.G.
241.7100.0385.8At4g16160827308mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family proteinHomologous to pea OEP16 and barley pPORA (OEP16), a member of Arabidopsis OEP16 family. Two OEP16 genes are closely related to each other and are conserved in all land plants, OEP16-2, also named OEP16-S, and OEP16-1 (renamed OEP16-L) are result of the gene duplication event that occurred prior to divergence of bryophytes and seed plants. Predominantly expressed in seed and is not inducible by cold treatment. atOEP16-S gained an additional exon. The promoter region of atOEP16-S (but not atOEP16-L) contains multiple G-box ABA-responsive elements. The atOEP16-S promoter conferred developmentally regulated seed- and pollen-specific GUS expression in tobacco.O.I.C.G.H.G.
235.7100.0334.2At5g01300830983phosphatidylethanolamine-binding family proteinF:phosphatidylethanolamine binding;P:biological_process unknown;C:cellular_component unknown;BOAPFO.I.C.G.H.G.
234.7100.083.3At2g19320816449unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
226.7100.0575.9At1g14950838060major latex protein-related / MLP-relatedF:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;PO.I.C.G.H.G.
223.2100.0437.9At3g17520821017late embryogenesis abundant domain-containing protein / LEA domain-containing proteinF:unknown;P:embryonic development ending in seed dormancy;C:endomembrane system;MOBFPVAO.I.C.G.H.G.
220.8100.0607.0At1g73190843653TIP3Moves to the Protein Storage Vacuole in a Golgi independent mannerO.I.C.G.H.G.
220.5100.0136.1At5g45310834567unknown proteinF:unknown;P:unknown;C:endomembrane system;OMVBFPAO.I.C.G.H.G.
219.6100.0211.0At4g10020826593AtHSD5 (hydroxysteroid dehydrogenase 5)F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endomembrane system;BOMFPAVO.I.C.G.H.G.
218.3100.0330.9At2g41280818727M10Encodes a hydrophilic protein similar to Late Embryogenesis Activated (LEA) proteins expressed during embryogenesis, which are thought to be involved in the acquisition of dessication tolerance.O.I.C.G.H.G.
216.3100.0281.0At2g25890817130glycine-rich protein / oleosinF:molecular_function unknown;P:lipid storage;C:monolayer-surrounded lipid storage body, integral to membrane, membrane;PBO.I.C.G.H.G.
216.3100.0102.0At5g42290834234transcription activator-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
214.1100.0362.8At2g40170818608GEA6 (LATE EMBRYOGENESIS ABUNDANT 6)Encodes a group 1 LEA gene that is activated by direct binding of ABI5 to its promoter and is involved in response to ABA. Is required for normal seed development. Involved in regulating the timing of dessication tolerance and rate of water loss during seed maturation.O.I.C.G.H.G.
210.6100.071.3At5g66110836743metal ion bindingF:metal ion binding;P:metal ion transport;C:plasma membrane;PFMO.I.C.G.H.G.
204.4100.028.2At1g26400839182FAD-binding domain-containing proteinF:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;FBPOAMO.I.C.G.H.G.
203.1100.0276.9At3g21370821691BGLU19 (BETA GLUCOSIDASE 19)F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFAO.I.C.G.H.G.
201.5100.0433.6At2g21490816688LEA (DEHYDRIN LEA)F:molecular_function unknown;P:response to water, response to stress;C:cellular_component unknown;PMFOBVO.I.C.G.H.G.
200.4100.0479.0At1g03890839379cupin family proteinF:nutrient reservoir activity;P:biological_process unknown;C:endomembrane system;PBMOO.I.C.G.H.G.
197.1100.089.1At5g43770834399proline-rich family proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;MBPOFVAO.I.C.G.H.G.
193.5100.0126.1At5g607608361972-phosphoglycerate kinase-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPBAFVO.I.C.G.H.G.
192.2100.0349.5At4g26740828781ATS1 (ARABIDOPSIS THALIANA SEED GENE 1)Gene is expressed preferentially in the embryo, has similarity to a rice ABA-responsive gene, EFA27.O.I.C.G.H.G.
192.1100.0286.7At3g51810824344EM1 (LATE EMBRYOGENESIS ABUNDANT 1)Encodes a ABA-inducible protein that accumulates during seed maturation, in parallel with its corresponding mRNA but with a 3 d delay. During germination, AtEm1 protein undergoes two successive cleavages before being degraded. Both proteins are more stable than the corresponding mRNA. The gene can be activated by the basic leucine zipper transcription factor ABI5. Expressed predominantly in provascular tissues with the strongest expression in the root tip.O.I.C.G.H.G.
190.4100.0642.6At3g27660822388OLEO4 (OLEOSIN 4)Encodes oleosin4 (Plant Cell, 2006, 18:1961), a protein found in oil bodies, involved in seed lipid accumulation. Functions in freezing tolerance of seeds. Note: also referred to as OLE3 in Plant Journal 2008, 55:798.O.I.C.G.H.G.
189.9100.0386.2At1g47540841163trypsin inhibitor, putativeF:ion channel inhibitor activity;P:defense response;C:endomembrane system, extracellular region;POO.I.C.G.H.G.
189.5100.0432.1At5g07190830610ATS3 (ARABIDOPSIS THALIANA SEED GENE 3)Gene is expressed preferentially in the embryo and encodes a unique protein of unknown function.O.I.C.G.H.G.
189.3100.0654.0At3g15670820810late embryogenesis abundant protein, putative / LEA protein, putativeF:molecular_function unknown;P:embryonic development ending in seed dormancy;C:nucleus;BOMPFVAO.I.C.G.H.G.
189.3100.060.7At1g08170837338histone H2B family proteinF:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MPOFBO.I.C.G.H.G.
184.7100.0275.7At2g33070817869NSP2 (NITRILE SPECIFIER PROTEIN 2)Encodes a nitrile-specifier protein NSP2. NSP2 is one out of five (At3g16400/NSP1, At2g33070/NSP2, At3g16390/NSP3, At3g16410/NSP4 and At5g48180/NSP5) A. thaliana epithiospecifier protein (ESP) homologues that promote simple nitrile, but not epithionitrile or thiocyanate formation.O.I.C.G.H.G.
182.5100.0492.4At1g32560840150late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing proteinF:molecular_function unknown;P:embryonic development ending in seed dormancy, embryonic development;C:cellular_component unknown;PMOO.I.C.G.H.G.
180.6100.0162.7At2g23110816843-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
174.7100.0156.3At5g55240835617caleosin-related family protein / embryo-specific protein, putativeF:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;PFOO.I.C.G.H.G.
172.4100.0443.6At2g47770819389benzodiazepine receptor-relatedF:molecular_function unknown;P:biological_process unknown;C:integral to membrane;BMOPAFO.I.C.G.H.G.
170.3100.0570.7At2g28490817397cupin family proteinF:nutrient reservoir activity;P:biological_process unknown;C:endomembrane system;BMPOFVAO.I.C.G.H.G.
167.7100.0106.4At2g42000818800plant EC metallothionein-like family 15 proteinF:zinc ion binding;P:biological_process unknown;C:unknown;PMOBFO.I.C.G.H.G.
167.4100.0137.6At1g72100843541late embryogenesis abundant domain-containing protein / LEA domain-containing proteinF:unknown;P:embryonic development ending in seed dormancy;C:endomembrane system;BPOMFAVO.I.C.G.H.G.
166.9100.0616.3At3g22640821835PAP85F:nutrient reservoir activity;P:biological_process unknown;C:plant-type cell wall;POMO.I.C.G.H.G.
166.9100.0331.4At2g38905818475hydrophobic protein, putative / low temperature and salt responsive protein, putativeF:unknown;P:hyperosmotic salinity response, response to cold;C:endomembrane system, integral to membrane;BFPMOO.I.C.G.H.G.
166.8100.0296.2At2g21820816718unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
163.999.9120.6At5g62800836401seven in absentia (SINA) family proteinF:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:multicellular organismal development, protein ubiquitination, ubiquitin-dependent protein catabolic process;C:nucleus;MPOFO.I.C.G.H.G.
162.799.9106.3At2g23640816896reticulon family protein (RTNLB13)F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;MPOO.I.C.G.H.G.
159.199.9477.6At4g271508288232S seed storage protein 2 / 2S albumin storage protein / NWMU2-2S albumin 2F:lipid binding, nutrient reservoir activity;P:lipid transport;C:endomembrane system;POO.I.C.G.H.G.
157.299.941.6At5g54000835483oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;POBFMO.I.C.G.H.G.
156.099.9657.0At4g25140828617OLEO1 (OLEOSIN 1)Encodes oleosin1, a protein found in oil bodies, involved in seed lipid accumulation. Suppression of OLEO1 (and OLEO2) resulted in an aberrant phenotype of embryo cells that contain unusually large oilbodies that are not normally observed in seeds. Changes in the size of oilbodies caused disruption of storage organelles, altering accumulation of lipids and proteins and causing delay in germination. Functions in freezing tolerance of seeds.O.I.C.G.H.G.
156.099.9575.9At3g01570821106glycine-rich protein / oleosinF:molecular_function unknown;P:lipid storage;C:monolayer-surrounded lipid storage body, integral to membrane, membrane;PO.I.C.G.H.G.
152.399.9404.4At3g62730825448unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBO.I.C.G.H.G.
146.099.938.7At5g16460831507-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOO.I.C.G.H.G.
144.599.9462.1At2g02120814743PDF2.1Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.O.I.C.G.H.G.
144.299.9639.8At4g271408288222S seed storage protein 1 / 2S albumin storage protein / NWMU1-2S albumin 1F:lipid binding, nutrient reservoir activity;P:lipid transport;C:endomembrane system;PMOO.I.C.G.H.G.
143.999.9135.1At3g15280820759unknown proteinF:molecular_function unknown;P:unknown;C:mitochondrion;PMO.I.C.G.H.G.
143.599.9611.9At1g04560839491AWPM-19-like membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
142.999.9256.2At1g70670843404caleosin-related family proteinF:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;PFOO.I.C.G.H.G.
141.899.9126.0At4g02280828081SUS3 (sucrose synthase 3)Encodes a protein with sucrose synthase activity (SUS3).O.I.C.G.H.G.
138.999.9138.0At5g44310834454late embryogenesis abundant domain-containing protein / LEA domain-containing proteinF:unknown;P:embryonic development ending in seed dormancy;C:unknown;OMBFPAVO.I.C.G.H.G.
138.999.9125.1At1g07500837264unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
138.499.9453.1At1g48130841231ATPER1encodes a protein similar to the 1-cysteine (1-Cys) peroxiredoxin family of antioxidants. Expression is limited to seed (aleurone and embryo) and is not induced by ABA or drought.O.I.C.G.H.G.
137.599.9198.9At3g53040824470late embryogenesis abundant protein, putative / LEA protein, putativeF:unknown;P:embryonic development ending in seed dormancy;C:unknown;MBOFPAVO.I.C.G.H.G.
137.399.9316.8At5g62490836369ATHVA22BPart of the AtHVA22 family. Protein expression is ABA- and stress-inducible.O.I.C.G.H.G.
137.299.950.3At3g02990821162ATHSFA1Emember of Heat Stress Transcription Factor (Hsf) familyO.I.C.G.H.G.
134.499.964.0At1g24735839082O-methyltransferaseF:O-methyltransferase activity;P:unknown;C:cytosol;BOPMFAO.I.C.G.H.G.
131.799.9348.4At5g06760830565late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing proteinF:molecular_function unknown;P:embryonic development ending in seed dormancy, embryonic development;C:cellular_component unknown;PMBOFVO.I.C.G.H.G.
130.299.9581.1At5g40420834040OLEO2 (OLEOSIN 2)Encodes oleosin2, a protein found in oil bodies, involved in seed lipid accumulation. Suppression of OLEO1 (and OLEO2) resulted in an aberrant phenotype of embryo cells that contain unusually large oilbodies that are not normally observed in seeds. Changes in the size of oilbodies caused disruption of storage organelles, altering accumulation of lipids and proteins and causing delay in germination. Functions in freezing tolerance of seeds.O.I.C.G.H.G.
128.999.9716.5At4g271708288252S seed storage protein 4 / 2S albumin storage protein / NWMU2-2S albumin 4F:lipid binding, nutrient reservoir activity;P:lipid transport;C:endomembrane system;POO.I.C.G.H.G.
128.799.9482.2At2g27380817282ATEPR1Encodes an extensin like gene involved in seed germination.O.I.C.G.H.G.
128.699.9255.8At5g07330830624unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PO.I.C.G.H.G.
127.999.992.9At5g47810834832PFK2 (PHOSPHOFRUCTOKINASE 2)F:6-phosphofructokinase activity;P:glycolysis;C:cytosol, 6-phosphofructokinase complex;BOMFPAVO.I.C.G.H.G.
127.499.9213.1At2g36640818236ATECP63 (EMBRYONIC CELL PROTEIN 63)Encodes putative phosphotyrosine protein belonging to late embryogenesis abundant (LEA) protein in group 3 that might be involved in maturation and desiccation tolerance of seeds. RFLP and CAPS mapping place it on chromosome 4 but the nucleotide sequence maps it to chromosome 2.O.I.C.G.H.G.



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