CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM131691

Assay name ATGE_78_D

GSE experiment GSE5634: AtGenExpress: Developmental series (siliques and seeds)

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
475.1 100.0 360.4 At1g62070 842503 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBF O.I. C.G. H.G.
429.7 100.0 57.7 At5g45770 834616 AtRLP55 (Receptor Like Protein 55) F:protein binding;P:unknown;C:unknown;PMBOFAV O.I. C.G. H.G.
364.8 100.0 289.5 At5g50750 835147 RGP4 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 4) reversibly glycosylated polypeptide RGP-4 (RGP4) O.I. C.G. H.G.
307.9 100.0 126.3 At5g47670 834818 NF-YB6 (NUCLEAR FACTOR Y, SUBUNIT B6) F:transcription activator binding, transcription factor activity, transcription activator activity;P:positive regulation of gene-specific transcription, regulation of transcription;C:nucleus, intracellular;MPFOA O.I. C.G. H.G.
266.1 100.0 53.6 At2g47750 819387 GH3.9 (PUTATIVE INDOLE-3-ACETIC ACID-AMIDO SYNTHETASE GH3.9) F:molecular_function unknown;P:response to auxin stimulus;C:chloroplast envelope;POBMF O.I. C.G. H.G.
262.1 100.0 104.2 At2g23550 816887 MES6 (METHYL ESTERASE 6) Encodes a protein predicted to act as a carboxylesterase. It has similarity to the SABP2 methyl salicylate esterase from tobacco but no enzymatic activity has been identified for this protein. O.I. C.G. H.G.
256.6 100.0 219.5 At1g23200 838928 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFAOM O.I. C.G. H.G.
247.8 100.0 121.9 At2g25540 817092 CESA10 (CELLULOSE SYNTHASE 10) cellulose synthase O.I. C.G. H.G.
227.8 100.0 171.0 At4g11180 826720 disease resistance-responsive family protein / dirigent family protein F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P O.I. C.G. H.G.
213.4 100.0 20.3 At3g21850 821739 ASK9 (ARABIDOPSIS SKP1-LIKE 9) one of Arabidopsis SKP1 homologues O.I. C.G. H.G.
184.2 100.0 41.6 At3g11180 820289 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, iron ion binding;P:unknown;C:cellular_component unknown;POBFM O.I. C.G. H.G.
164.6 100.0 141.2 At1g65480 842859 FT (FLOWERING LOCUS T) FT, together with LFY, promotes flowering and is antagonistic with its homologous gene, TERMINAL FLOWER1 (TFL1). FT is expressed in leaves and is induced by long day treatment. Either the FT mRNA or protein is translocated to the shoot apex where it induces its own expression. Recent data suggests that FT protein acts as a long-range signal. FT is a target of CO and acts upstream of SOC1. O.I. C.G. H.G.
153.3 99.9 66.7 At1g43640 840948 AtTLP5 (TUBBY LIKE PROTEIN 5) Member of TLP family O.I. C.G. H.G.
152.2 99.9 39.4 At4g00220 828084 JLO (JAGGED LATERAL ORGANS) Encodes a protein containing a LOB domain that is expressed in embryos, flower primordium and lateral floral organ boundaries. Overexpression is correlated with activation of STM and KNAT1 and down regulation of PIN1 and reduced auxin transport levels. Ectopic expression in plants results in premature termination of the shoot apical meristem and small, lobed leaves. O.I. C.G. H.G.
151.9 99.9 155.9 At5g50260 835091 cysteine proteinase, putative F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAF O.I. C.G. H.G.
147.9 99.9 103.0 At2g23580 816890 MES4 (METHYL ESTERASE 4) Encodes a protein shown to have carboxylesterase activity and methyl salicylate esterase activity in vitro. This protein does not act on methyl IAA, methyl JA, MeGA4, or MEGA9 in vitro. O.I. C.G. H.G.
145.0 99.9 135.7 At5g15740 831430 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
143.9 99.9 52.3 At1g02720 839475 GATL5 (GALACTURONOSYLTRANSFERASE 5) Encodes a protein with putative galacturonosyltransferase activity. O.I. C.G. H.G.
143.2 99.9 299.8 At1g04660 839454 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBOPFVA O.I. C.G. H.G.
138.9 99.9 154.5 At5g60630 836184 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO O.I. C.G. H.G.
137.3 99.9 23.4 At1g25410 839127 ATIPT6 AB061404 Arabidopsis thaliana AtIPT6 mRNA for cytokinin synthase, complete cds O.I. C.G. H.G.
133.1 99.9 19.7 At1g78390 844175 NCED9 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 9) Encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. The expression of this gene increases during the first 6h of imbibition. O.I. C.G. H.G.
129.1 99.9 84.1 At3g14760 820704 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
127.3 99.9 111.9 At1g18100 838390 E12A11 E12A11 protein (E12A11) O.I. C.G. H.G.
124.6 99.9 63.2 At3g25260 822120 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;BPMOF O.I. C.G. H.G.
121.7 99.9 137.1 At4g34520 829603 KCS18 Encodes KCS18, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). O.I. C.G. H.G.
114.9 99.9 55.3 At1g71890 843520 SUC5 Encodes a sucrose transporter that is expressed in the endosperm. Mutants have delayed accumulation of fatty acids and embryo maturation. O.I. C.G. H.G.
112.1 99.9 363.4 At5g51210 835196 OLEO3 (OLEOSIN3) Encodes oleosin3, a protein found in oil bodies, involved in seed lipid accumulation. O.I. C.G. H.G.
109.1 99.9 20.6 At5g52500 835326 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
107.8 99.9 134.0 At5g07200 830611 YAP169 encodes a gibberellin 20-oxidase. O.I. C.G. H.G.
101.9 99.9 265.1 At4g36700 829823 cupin family protein F:nutrient reservoir activity;P:biological_process unknown;C:endomembrane system;MOFBPVA O.I. C.G. H.G.
100.7 99.9 495.6 At1g62000 842495 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPOF O.I. C.G. H.G.
100.1 99.9 211.8 At5g59845 836106 gibberellin-regulated family protein F:molecular_function unknown;P:response to gibberellin stimulus;C:endomembrane system;P O.I. C.G. H.G.
99.9 99.9 68.7 At1g71250 843466 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, lipase activity, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM O.I. C.G. H.G.
98.1 99.9 166.1 At5g48100 834862 TT10 (TRANSPARENT TESTA 10) Encodes a protein that is similar to laccase-like polyphenol oxidases. Involved in lignin and flavonoids biosynthesis. It has four conserved copper binding domains. Expressed in developing testa, where it colocalizes with the flavonoid end products proanthocyanidins and flavonols. Mutant plants exhibited a delay in developmentally determined browning of the testa, characterized by the pale brown color of seed coat. The tt10 mutant seeds accumulate more epicatechin monomers and more soluble proanthocyanidins than wild-type seeds. Flavonol composition was also affected in tt10 seeds, which exhibited a higher ratio of quercetin rhamnoside monomers versus dimers than wild-type seeds. O.I. C.G. H.G.
95.0 99.9 50.7 At5g51490 835223 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFOM O.I. C.G. H.G.
94.7 99.9 60.7 At2g28650 817414 ATEXO70H8 (exocyst subunit EXO70 family protein H8) A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. O.I. C.G. H.G.
94.5 99.9 399.5 At5g38160 833796 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
94.4 99.9 48.1 At3g54320 824599 WRI1 (WRINKLED 1) WRINKLED1 encodes transcription factor of the AP2/ERWEBP class. Protein has two plant-specific (AP2/EREB) DNA-binding domains and is involved in the control of storage compound biosynthesis in Arabidopsis. Mutants have wrinkled seed phenotype, due to a defect in the incorporation of sucrose and glucose into triacylglycerols. Transgenic sGsL plants (21-day-old) grown on 6% sucrose for 24 hours had 2-fold increase in levels of expressions (sGsL line carries a single copy of T-DNA containing the Spomin::GUS-Spomin::LUC dual reporter genes in the upper arm of chromosome 5 of ecotype Col-0. The sporamin .minimal. promoter directs sugar-inducible expression of the LUC and GUS reporters in leaves). Regulation by LEC2 promotes fatty acid accumulation during seed maturation. O.I. C.G. H.G.
94.3 99.9 99.4 At1g09380 837460 integral membrane family protein / nodulin MtN21-related F:unknown;P:unknown;C:endomembrane system, membrane;BOPAMF O.I. C.G. H.G.
91.4 99.9 244.0 At3g63040 825479 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
91.3 99.9 22.6 At1g28590 839759 lipase, putative F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM O.I. C.G. H.G.
88.7 99.9 85.0 At3g08900 820039 RGP3 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 3) Encodes a reversible autoglycosylated protein peripherally associated with cell membranes. Highly expressed in roots ans suspension-cultured cells. O.I. C.G. H.G.
88.0 99.9 17.0 At4g10490 826641 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:secondary metabolic process;C:cellular_component unknown;POBFM O.I. C.G. H.G.
85.9 99.9 57.4 At3g58740 825043 CSY1 (CITRATE SYNTHASE 1) Encodes a peroxisomal citrate synthase that is expressed in siliques and developing seeds. O.I. C.G. H.G.
82.3 99.9 74.9 At1g79840 844323 GL2 (GLABRA 2) Glabra 2, a homeodomain protein affects epidermal cell identity including trichomes, root hairs, and seed coat. It also down-regulates seed oil content. Expressed in atrichoblasts and required to suppress root hair development. Also expressed abundantly during early seed development. Directly regulated by WER. O.I. C.G. H.G.
81.9 99.9 90.5 At5g57920 835903 plastocyanin-like domain-containing protein F:electron carrier activity, copper ion binding;P:unknown;C:endomembrane system;P O.I. C.G. H.G.
81.7 99.9 51.9 At5g57520 835856 ZFP2 (ZINC FINGER PROTEIN 2) Encodes a zinc finger protein containing only a single zinc finger. O.I. C.G. H.G.
80.4 99.9 245.6 At2g34700 818035 pollen Ole e 1 allergen and extensin family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
80.2 99.9 138.3 At1g56170 842070 NF-YC2 (NUCLEAR FACTOR Y, SUBUNIT C2) Encodes a protein with similarity to a subunit of the CCAAT promoter motif binding complex of yeast.One of two members of this class (HAP5B) and expressed in vegetative and reproductive tissues O.I. C.G. H.G.
78.4 99.9 92.1 At2g35290 818096 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
76.5 99.9 22.9 At5g39130 833906 germin-like protein, putative F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFOB O.I. C.G. H.G.
74.8 99.9 228.7 At3g05020 819664 ACP1 (acyl carrier protein 1) encodes an acyl carrier protein expressed in leaves, roots, and dry seeds. Protein is not regulated by light. O.I. C.G. H.G.
74.8 99.9 66.4 At1g05160 839311 CYP88A3 (CYTOCHROME P450 88 A3) Encodes an ent-kaurenoic acid hydroxylase, a member of the CYP88A cytochrome p450 family. O.I. C.G. H.G.
69.7 99.9 126.5 At5g49190 834978 SUS2 (SUCROSE SYNTHASE 2) Encodes a putative sucrose synthase (SUS2). The activity of the enzyme could not be assayed as proved to be insoluble (PMID 17257168). Induced specifically by O(2) deficiency. O.I. C.G. H.G.
69.4 99.9 315.5 At4g27150 828823 2S seed storage protein 2 / 2S albumin storage protein / NWMU2-2S albumin 2 F:lipid binding, nutrient reservoir activity;P:lipid transport;C:endomembrane system;PO O.I. C.G. H.G.
69.4 99.9 52.1 At2g25940 817135 ALPHA-VPE (alpha-vacuolar processing enzyme) Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteinases that is expressed in vegetative organs and is upregulated in association with various types of cell death and under stressed conditions. O.I. C.G. H.G.
68.4 99.9 68.2 At5g38180 833798 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
66.0 99.8 37.8 At5g22810 832344 GDSL-motif lipase, putative F:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM O.I. C.G. H.G.
65.1 99.8 84.9 At5g27200 832778 ACP5 (acyl carrier protein 5) encodes an acyl carrier protein O.I. C.G. H.G.
64.3 99.8 91.2 At1g01900 839318 SBTI1.1 Encodes AtSBT1.1, a subtilisin-like serine protease. Cleaves the phytosulfokine AtPSK4, a growth promoting peptide. O.I. C.G. H.G.
63.9 99.8 368.5 At3g01570 821106 glycine-rich protein / oleosin F:molecular_function unknown;P:lipid storage;C:monolayer-surrounded lipid storage body, integral to membrane, membrane;P O.I. C.G. H.G.
62.9 99.8 29.7 At1g71120 843452 GLIP6 Contains lipase signature motif and GDSL domain. O.I. C.G. H.G.
61.9 99.8 396.5 At4g27160 828824 AT2S3 F:lipid binding, nutrient reservoir activity;P:lipid transport;C:endomembrane system;PO O.I. C.G. H.G.
61.9 99.8 32.6 At5g44360 834462 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAM O.I. C.G. H.G.
61.6 99.8 68.0 At3g12203 820399 scpl17 (serine carboxypeptidase-like 17) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB O.I. C.G. H.G.
60.4 99.8 32.1 At3g04200 819575 germin-like protein, putative F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFO O.I. C.G. H.G.
60.2 99.8 91.7 At4g32290 829363 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POB O.I. C.G. H.G.
59.5 99.8 58.8 At5g47530 834803 auxin-responsive protein, putative F:unknown;P:multicellular organismal development;C:membrane;PMFOB O.I. C.G. H.G.
57.9 99.8 51.0 At1g50650 841487 stigma-specific Stig1 family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPFOM O.I. C.G. H.G.
57.5 99.8 178.9 At2g46960 819310 CYP709B1 member of CYP709B O.I. C.G. H.G.
57.3 99.8 179.8 At2g19570 816476 CDA1 (CYTIDINE DEAMINASE 1) Encodes a cytidine deaminase that deaminates cytidine and deoxycytidine and is competitively inhibited by cytosine-containing compounds. O.I. C.G. H.G.
55.5 99.8 13.8 At3g52970 824463 CYP76G1 member of CYP76G O.I. C.G. H.G.
53.8 99.8 23.5 At5g07500 830642 PEI1 Encodes an embryo-specific zinc finger transcription factor required for heart-stage embryo formation. O.I. C.G. H.G.
53.7 99.8 250.2 At1g62290 842526 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis, lipid metabolic process;C:vacuole;MFOPB O.I. C.G. H.G.
53.1 99.8 56.3 At4g37050 829859 PLP4 (PATATIN-LIKE PROTEIN 4) F:nutrient reservoir activity;P:metabolic process, lipid metabolic process;C:cellular_component unknown;PBOMF O.I. C.G. H.G.
52.0 99.8 384.1 At4g27140 828822 2S seed storage protein 1 / 2S albumin storage protein / NWMU1-2S albumin 1 F:lipid binding, nutrient reservoir activity;P:lipid transport;C:endomembrane system;PMO O.I. C.G. H.G.
51.8 99.8 108.2 At3g24250 822012 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMPOFVA O.I. C.G. H.G.
50.7 99.8 26.5 At4g31060 829233 AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. O.I. C.G. H.G.
50.0 99.8 41.9 At1g60970 842388 clathrin adaptor complex small chain family protein F:protein binding;P:intracellular protein transport, transport, vesicle-mediated transport;C:membrane coat, clathrin vesicle coat;MPFO O.I. C.G. H.G.
49.2 99.8 37.9 At3g25160 822107 ER lumen protein retaining receptor family protein F:ER retention sequence binding, receptor activity;P:protein retention in ER lumen, protein transport;C:integral to membrane;MOPF O.I. C.G. H.G.
49.1 99.8 73.9 At2g43060 818908 transcription factor F:transcription factor activity;P:regulation of transcription;C:nucleus;P O.I. C.G. H.G.
48.8 99.8 46.9 At5g03190 831909 CPUORF47 (CONSERVED PEPTIDE UPSTREAM OPEN READING FRAME 47) F:molecular_function unknown;P:biological_process unknown;C:unknown;POB O.I. C.G. H.G.
48.6 99.8 16.6 At1g62900 842591 O-methyltransferase, putative F:O-methyltransferase activity;P:unknown;C:cytosol;PBFOM O.I. C.G. H.G.
48.4 99.8 38.5 At1g04380 839535 2-oxoglutarate-dependent dioxygenase, putative encodes a protein similar to a 2-oxoglutarate-dependent dioxygenase O.I. C.G. H.G.
48.0 99.8 102.3 At2g34870 818052 MEE26 (maternal effect embryo arrest 26) F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:endomembrane system;MPOVFBA O.I. C.G. H.G.
48.0 99.8 37.3 At1g68380 843167 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
46.8 99.8 191.7 At1g47540 841163 trypsin inhibitor, putative F:ion channel inhibitor activity;P:defense response;C:endomembrane system, extracellular region;PO O.I. C.G. H.G.
46.5 99.8 106.2 At1g67100 843030 LBD40 (LOB DOMAIN-CONTAINING PROTEIN 40) F:unknown;P:response to gibberellin stimulus;C:unknown;P O.I. C.G. H.G.
45.9 99.8 63.8 At5g62800 836401 seven in absentia (SINA) family protein F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:multicellular organismal development, protein ubiquitination, ubiquitin-dependent protein catabolic process;C:nucleus;MPOF O.I. C.G. H.G.
43.8 99.8 117.9 At1g61720 842469 BAN (BANYULS) Negative regulator of flavonoid biosynthesis, mutants accumulate flavonoid pigments in their seed coat, putative oxidoreductase. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium. O.I. C.G. H.G.
42.4 99.8 109.8 At5g15530 831406 BCCP2 (BIOTIN CARBOXYL CARRIER PROTEIN 2) biotin carboxyl carrier protein isoform 2 (BCCP2) mRNA, O.I. C.G. H.G.
42.2 99.8 107.9 At5g62150 836335 peptidoglycan-binding LysM domain-containing protein F:molecular_function unknown;P:cell wall macromolecule catabolic process;C:endomembrane system;P O.I. C.G. H.G.
42.0 99.8 37.3 At1g05280 837026 fringe-related protein F:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:cellular_component unknown;PFMO O.I. C.G. H.G.
41.8 99.8 471.7 At1g03880 839383 CRU2 (CRUCIFERIN 2) Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. O.I. C.G. H.G.
41.7 99.8 329.0 At5g40420 834040 OLEO2 (OLEOSIN 2) Encodes oleosin2, a protein found in oil bodies, involved in seed lipid accumulation. Suppression of OLEO1 (and OLEO2) resulted in an aberrant phenotype of embryo cells that contain unusually large oilbodies that are not normally observed in seeds. Changes in the size of oilbodies caused disruption of storage organelles, altering accumulation of lipids and proteins and causing delay in germination. Functions in freezing tolerance of seeds. O.I. C.G. H.G.
41.3 99.8 34.4 At3g26790 822293 FUS3 (FUSCA 3) Transcriptional factor with high similarity to the B3 region of the VP1/ABI3-like proteins. Full length FUS3 protein binds to the highly conserved RY motif [DNA motif CATGCA(TG)], present in many seed-specific promoters, and the B3 domains of this transcription factor is necessary for the specific interaction with the RY element. Transcriptional activity of FUS3 requires the B3 DNA-binding domain and an activation domain. FUS3 specifies cotyledon identity. Regulator of gene expression during late embryogenesis. Involved in the control foliar organ identity in Arabidopsis by regulating the synthesis of two hormones, abscisic acid and gibberellin. FUS3 together with LEC1 positively regulate the abundance of the ABI3 protein in the seed. O.I. C.G. H.G.
40.8 99.8 443.3 At5g44120 834435 CRA1 (CRUCIFERINA) Encodes a 12S seed storage protein. The Landsberg erecta genome contains another copy of 12S globulin gene, CRA2, which is located tandemly with CRA1. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. O.I. C.G. H.G.
40.7 99.8 32.0 At5g07260 830617 homeobox protein-related F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
40.4 99.8 61.4 At1g11170 837658 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POB O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
475.1	100.0	360.4	At1g62070	842503	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBF	O.I.	C.G.	H.G.
429.7	100.0	57.7	At5g45770	834616	AtRLP55 (Receptor Like Protein 55)	F:protein binding;P:unknown;C:unknown;PMBOFAV	O.I.	C.G.	H.G.
364.8	100.0	289.5	At5g50750	835147	RGP4 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 4)	reversibly glycosylated polypeptide RGP-4 (RGP4)	O.I.	C.G.	H.G.
307.9	100.0	126.3	At5g47670	834818	NF-YB6 (NUCLEAR FACTOR Y, SUBUNIT B6)	F:transcription activator binding, transcription factor activity, transcription activator activity;P:positive regulation of gene-specific transcription, regulation of transcription;C:nucleus, intracellular;MPFOA	O.I.	C.G.	H.G.
266.1	100.0	53.6	At2g47750	819387	GH3.9 (PUTATIVE INDOLE-3-ACETIC ACID-AMIDO SYNTHETASE GH3.9)	F:molecular_function unknown;P:response to auxin stimulus;C:chloroplast envelope;POBMF	O.I.	C.G.	H.G.
262.1	100.0	104.2	At2g23550	816887	MES6 (METHYL ESTERASE 6)	Encodes a protein predicted to act as a carboxylesterase. It has similarity to the SABP2 methyl salicylate esterase from tobacco but no enzymatic activity has been identified for this protein.	O.I.	C.G.	H.G.
256.6	100.0	219.5	At1g23200	838928	pectinesterase family protein	F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFAOM	O.I.	C.G.	H.G.
247.8	100.0	121.9	At2g25540	817092	CESA10 (CELLULOSE SYNTHASE 10)	cellulose synthase	O.I.	C.G.	H.G.
227.8	100.0	171.0	At4g11180	826720	disease resistance-responsive family protein / dirigent family protein	F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P	O.I.	C.G.	H.G.
213.4	100.0	20.3	At3g21850	821739	ASK9 (ARABIDOPSIS SKP1-LIKE 9)	one of Arabidopsis SKP1 homologues	O.I.	C.G.	H.G.
184.2	100.0	41.6	At3g11180	820289	oxidoreductase, 2OG-Fe(II) oxygenase family protein	F:oxidoreductase activity, iron ion binding;P:unknown;C:cellular_component unknown;POBFM	O.I.	C.G.	H.G.
164.6	100.0	141.2	At1g65480	842859	FT (FLOWERING LOCUS T)	FT, together with LFY, promotes flowering and is antagonistic with its homologous gene, TERMINAL FLOWER1 (TFL1). FT is expressed in leaves and is induced by long day treatment. Either the FT mRNA or protein is translocated to the shoot apex where it induces its own expression. Recent data suggests that FT protein acts as a long-range signal. FT is a target of CO and acts upstream of SOC1.	O.I.	C.G.	H.G.
153.3	99.9	66.7	At1g43640	840948	AtTLP5 (TUBBY LIKE PROTEIN 5)	Member of TLP family	O.I.	C.G.	H.G.
152.2	99.9	39.4	At4g00220	828084	JLO (JAGGED LATERAL ORGANS)	Encodes a protein containing a LOB domain that is expressed in embryos, flower primordium and lateral floral organ boundaries. Overexpression is correlated with activation of STM and KNAT1 and down regulation of PIN1 and reduced auxin transport levels. Ectopic expression in plants results in premature termination of the shoot apical meristem and small, lobed leaves.	O.I.	C.G.	H.G.
151.9	99.9	155.9	At5g50260	835091	cysteine proteinase, putative	F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAF	O.I.	C.G.	H.G.
147.9	99.9	103.0	At2g23580	816890	MES4 (METHYL ESTERASE 4)	Encodes a protein shown to have carboxylesterase activity and methyl salicylate esterase activity in vitro. This protein does not act on methyl IAA, methyl JA, MeGA4, or MEGA9 in vitro.	O.I.	C.G.	H.G.
145.0	99.9	135.7	At5g15740	831430	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
143.9	99.9	52.3	At1g02720	839475	GATL5 (GALACTURONOSYLTRANSFERASE 5)	Encodes a protein with putative galacturonosyltransferase activity.	O.I.	C.G.	H.G.
143.2	99.9	299.8	At1g04660	839454	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBOPFVA	O.I.	C.G.	H.G.
138.9	99.9	154.5	At5g60630	836184	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO	O.I.	C.G.	H.G.
137.3	99.9	23.4	At1g25410	839127	ATIPT6	AB061404 Arabidopsis thaliana AtIPT6 mRNA for cytokinin synthase, complete cds	O.I.	C.G.	H.G.
133.1	99.9	19.7	At1g78390	844175	NCED9 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 9)	Encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. The expression of this gene increases during the first 6h of imbibition.	O.I.	C.G.	H.G.
129.1	99.9	84.1	At3g14760	820704	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
127.3	99.9	111.9	At1g18100	838390	E12A11	E12A11 protein (E12A11)	O.I.	C.G.	H.G.
124.6	99.9	63.2	At3g25260	822120	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport;C:membrane;BPMOF	O.I.	C.G.	H.G.
121.7	99.9	137.1	At4g34520	829603	KCS18	Encodes KCS18, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).	O.I.	C.G.	H.G.
114.9	99.9	55.3	At1g71890	843520	SUC5	Encodes a sucrose transporter that is expressed in the endosperm. Mutants have delayed accumulation of fatty acids and embryo maturation.	O.I.	C.G.	H.G.
112.1	99.9	363.4	At5g51210	835196	OLEO3 (OLEOSIN3)	Encodes oleosin3, a protein found in oil bodies, involved in seed lipid accumulation.	O.I.	C.G.	H.G.
109.1	99.9	20.6	At5g52500	835326	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
107.8	99.9	134.0	At5g07200	830611	YAP169	encodes a gibberellin 20-oxidase.	O.I.	C.G.	H.G.
101.9	99.9	265.1	At4g36700	829823	cupin family protein	F:nutrient reservoir activity;P:biological_process unknown;C:endomembrane system;MOFBPVA	O.I.	C.G.	H.G.
100.7	99.9	495.6	At1g62000	842495	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPOF	O.I.	C.G.	H.G.
100.1	99.9	211.8	At5g59845	836106	gibberellin-regulated family protein	F:molecular_function unknown;P:response to gibberellin stimulus;C:endomembrane system;P	O.I.	C.G.	H.G.
99.9	99.9	68.7	At1g71250	843466	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, lipase activity, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM	O.I.	C.G.	H.G.
98.1	99.9	166.1	At5g48100	834862	TT10 (TRANSPARENT TESTA 10)	Encodes a protein that is similar to laccase-like polyphenol oxidases. Involved in lignin and flavonoids biosynthesis. It has four conserved copper binding domains. Expressed in developing testa, where it colocalizes with the flavonoid end products proanthocyanidins and flavonols. Mutant plants exhibited a delay in developmentally determined browning of the testa, characterized by the pale brown color of seed coat. The tt10 mutant seeds accumulate more epicatechin monomers and more soluble proanthocyanidins than wild-type seeds. Flavonol composition was also affected in tt10 seeds, which exhibited a higher ratio of quercetin rhamnoside monomers versus dimers than wild-type seeds.	O.I.	C.G.	H.G.
95.0	99.9	50.7	At5g51490	835223	pectinesterase family protein	F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFOM	O.I.	C.G.	H.G.
94.7	99.9	60.7	At2g28650	817414	ATEXO70H8 (exocyst subunit EXO70 family protein H8)	A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.	O.I.	C.G.	H.G.
94.5	99.9	399.5	At5g38160	833796	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
94.4	99.9	48.1	At3g54320	824599	WRI1 (WRINKLED 1)	WRINKLED1 encodes transcription factor of the AP2/ERWEBP class. Protein has two plant-specific (AP2/EREB) DNA-binding domains and is involved in the control of storage compound biosynthesis in Arabidopsis. Mutants have wrinkled seed phenotype, due to a defect in the incorporation of sucrose and glucose into triacylglycerols. Transgenic sGsL plants (21-day-old) grown on 6% sucrose for 24 hours had 2-fold increase in levels of expressions (sGsL line carries a single copy of T-DNA containing the Spomin::GUS-Spomin::LUC dual reporter genes in the upper arm of chromosome 5 of ecotype Col-0. The sporamin .minimal. promoter directs sugar-inducible expression of the LUC and GUS reporters in leaves). Regulation by LEC2 promotes fatty acid accumulation during seed maturation.	O.I.	C.G.	H.G.
94.3	99.9	99.4	At1g09380	837460	integral membrane family protein / nodulin MtN21-related	F:unknown;P:unknown;C:endomembrane system, membrane;BOPAMF	O.I.	C.G.	H.G.
91.4	99.9	244.0	At3g63040	825479	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
91.3	99.9	22.6	At1g28590	839759	lipase, putative	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM	O.I.	C.G.	H.G.
88.7	99.9	85.0	At3g08900	820039	RGP3 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 3)	Encodes a reversible autoglycosylated protein peripherally associated with cell membranes. Highly expressed in roots ans suspension-cultured cells.	O.I.	C.G.	H.G.
88.0	99.9	17.0	At4g10490	826641	oxidoreductase, 2OG-Fe(II) oxygenase family protein	F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:secondary metabolic process;C:cellular_component unknown;POBFM	O.I.	C.G.	H.G.
85.9	99.9	57.4	At3g58740	825043	CSY1 (CITRATE SYNTHASE 1)	Encodes a peroxisomal citrate synthase that is expressed in siliques and developing seeds.	O.I.	C.G.	H.G.
82.3	99.9	74.9	At1g79840	844323	GL2 (GLABRA 2)	Glabra 2, a homeodomain protein affects epidermal cell identity including trichomes, root hairs, and seed coat. It also down-regulates seed oil content. Expressed in atrichoblasts and required to suppress root hair development. Also expressed abundantly during early seed development. Directly regulated by WER.	O.I.	C.G.	H.G.
81.9	99.9	90.5	At5g57920	835903	plastocyanin-like domain-containing protein	F:electron carrier activity, copper ion binding;P:unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
81.7	99.9	51.9	At5g57520	835856	ZFP2 (ZINC FINGER PROTEIN 2)	Encodes a zinc finger protein containing only a single zinc finger.	O.I.	C.G.	H.G.
80.4	99.9	245.6	At2g34700	818035	pollen Ole e 1 allergen and extensin family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
80.2	99.9	138.3	At1g56170	842070	NF-YC2 (NUCLEAR FACTOR Y, SUBUNIT C2)	Encodes a protein with similarity to a subunit of the CCAAT promoter motif binding complex of yeast.One of two members of this class (HAP5B) and expressed in vegetative and reproductive tissues	O.I.	C.G.	H.G.
78.4	99.9	92.1	At2g35290	818096	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
76.5	99.9	22.9	At5g39130	833906	germin-like protein, putative	F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFOB	O.I.	C.G.	H.G.
74.8	99.9	228.7	At3g05020	819664	ACP1 (acyl carrier protein 1)	encodes an acyl carrier protein expressed in leaves, roots, and dry seeds. Protein is not regulated by light.	O.I.	C.G.	H.G.
74.8	99.9	66.4	At1g05160	839311	CYP88A3 (CYTOCHROME P450 88 A3)	Encodes an ent-kaurenoic acid hydroxylase, a member of the CYP88A cytochrome p450 family.	O.I.	C.G.	H.G.
69.7	99.9	126.5	At5g49190	834978	SUS2 (SUCROSE SYNTHASE 2)	Encodes a putative sucrose synthase (SUS2). The activity of the enzyme could not be assayed as proved to be insoluble (PMID 17257168). Induced specifically by O(2) deficiency.	O.I.	C.G.	H.G.
69.4	99.9	315.5	At4g27150	828823	2S seed storage protein 2 / 2S albumin storage protein / NWMU2-2S albumin 2	F:lipid binding, nutrient reservoir activity;P:lipid transport;C:endomembrane system;PO	O.I.	C.G.	H.G.
69.4	99.9	52.1	At2g25940	817135	ALPHA-VPE (alpha-vacuolar processing enzyme)	Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteinases that is expressed in vegetative organs and is upregulated in association with various types of cell death and under stressed conditions.	O.I.	C.G.	H.G.
68.4	99.9	68.2	At5g38180	833798	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
66.0	99.8	37.8	At5g22810	832344	GDSL-motif lipase, putative	F:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM	O.I.	C.G.	H.G.
65.1	99.8	84.9	At5g27200	832778	ACP5 (acyl carrier protein 5)	encodes an acyl carrier protein	O.I.	C.G.	H.G.
64.3	99.8	91.2	At1g01900	839318	SBTI1.1	Encodes AtSBT1.1, a subtilisin-like serine protease. Cleaves the phytosulfokine AtPSK4, a growth promoting peptide.	O.I.	C.G.	H.G.
63.9	99.8	368.5	At3g01570	821106	glycine-rich protein / oleosin	F:molecular_function unknown;P:lipid storage;C:monolayer-surrounded lipid storage body, integral to membrane, membrane;P	O.I.	C.G.	H.G.
62.9	99.8	29.7	At1g71120	843452	GLIP6	Contains lipase signature motif and GDSL domain.	O.I.	C.G.	H.G.
61.9	99.8	396.5	At4g27160	828824	AT2S3	F:lipid binding, nutrient reservoir activity;P:lipid transport;C:endomembrane system;PO	O.I.	C.G.	H.G.
61.9	99.8	32.6	At5g44360	834462	FAD-binding domain-containing protein	F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAM	O.I.	C.G.	H.G.
61.6	99.8	68.0	At3g12203	820399	scpl17 (serine carboxypeptidase-like 17)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB	O.I.	C.G.	H.G.
60.4	99.8	32.1	At3g04200	819575	germin-like protein, putative	F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFO	O.I.	C.G.	H.G.
60.2	99.8	91.7	At4g32290	829363	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POB	O.I.	C.G.	H.G.
59.5	99.8	58.8	At5g47530	834803	auxin-responsive protein, putative	F:unknown;P:multicellular organismal development;C:membrane;PMFOB	O.I.	C.G.	H.G.
57.9	99.8	51.0	At1g50650	841487	stigma-specific Stig1 family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPFOM	O.I.	C.G.	H.G.
57.5	99.8	178.9	At2g46960	819310	CYP709B1	member of CYP709B	O.I.	C.G.	H.G.
57.3	99.8	179.8	At2g19570	816476	CDA1 (CYTIDINE DEAMINASE 1)	Encodes a cytidine deaminase that deaminates cytidine and deoxycytidine and is competitively inhibited by cytosine-containing compounds.	O.I.	C.G.	H.G.
55.5	99.8	13.8	At3g52970	824463	CYP76G1	member of CYP76G	O.I.	C.G.	H.G.
53.8	99.8	23.5	At5g07500	830642	PEI1	Encodes an embryo-specific zinc finger transcription factor required for heart-stage embryo formation.	O.I.	C.G.	H.G.
53.7	99.8	250.2	At1g62290	842526	aspartyl protease family protein	F:aspartic-type endopeptidase activity;P:proteolysis, lipid metabolic process;C:vacuole;MFOPB	O.I.	C.G.	H.G.
53.1	99.8	56.3	At4g37050	829859	PLP4 (PATATIN-LIKE PROTEIN 4)	F:nutrient reservoir activity;P:metabolic process, lipid metabolic process;C:cellular_component unknown;PBOMF	O.I.	C.G.	H.G.
52.0	99.8	384.1	At4g27140	828822	2S seed storage protein 1 / 2S albumin storage protein / NWMU1-2S albumin 1	F:lipid binding, nutrient reservoir activity;P:lipid transport;C:endomembrane system;PMO	O.I.	C.G.	H.G.
51.8	99.8	108.2	At3g24250	822012	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMPOFVA	O.I.	C.G.	H.G.
50.7	99.8	26.5	At4g31060	829233	AP2 domain-containing transcription factor, putative	encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.	O.I.	C.G.	H.G.
50.0	99.8	41.9	At1g60970	842388	clathrin adaptor complex small chain family protein	F:protein binding;P:intracellular protein transport, transport, vesicle-mediated transport;C:membrane coat, clathrin vesicle coat;MPFO	O.I.	C.G.	H.G.
49.2	99.8	37.9	At3g25160	822107	ER lumen protein retaining receptor family protein	F:ER retention sequence binding, receptor activity;P:protein retention in ER lumen, protein transport;C:integral to membrane;MOPF	O.I.	C.G.	H.G.
49.1	99.8	73.9	At2g43060	818908	transcription factor	F:transcription factor activity;P:regulation of transcription;C:nucleus;P	O.I.	C.G.	H.G.
48.8	99.8	46.9	At5g03190	831909	CPUORF47 (CONSERVED PEPTIDE UPSTREAM OPEN READING FRAME 47)	F:molecular_function unknown;P:biological_process unknown;C:unknown;POB	O.I.	C.G.	H.G.
48.6	99.8	16.6	At1g62900	842591	O-methyltransferase, putative	F:O-methyltransferase activity;P:unknown;C:cytosol;PBFOM	O.I.	C.G.	H.G.
48.4	99.8	38.5	At1g04380	839535	2-oxoglutarate-dependent dioxygenase, putative	encodes a protein similar to a 2-oxoglutarate-dependent dioxygenase	O.I.	C.G.	H.G.
48.0	99.8	102.3	At2g34870	818052	MEE26 (maternal effect embryo arrest 26)	F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:endomembrane system;MPOVFBA	O.I.	C.G.	H.G.
48.0	99.8	37.3	At1g68380	843167	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
46.8	99.8	191.7	At1g47540	841163	trypsin inhibitor, putative	F:ion channel inhibitor activity;P:defense response;C:endomembrane system, extracellular region;PO	O.I.	C.G.	H.G.
46.5	99.8	106.2	At1g67100	843030	LBD40 (LOB DOMAIN-CONTAINING PROTEIN 40)	F:unknown;P:response to gibberellin stimulus;C:unknown;P	O.I.	C.G.	H.G.
45.9	99.8	63.8	At5g62800	836401	seven in absentia (SINA) family protein	F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:multicellular organismal development, protein ubiquitination, ubiquitin-dependent protein catabolic process;C:nucleus;MPOF	O.I.	C.G.	H.G.
43.8	99.8	117.9	At1g61720	842469	BAN (BANYULS)	Negative regulator of flavonoid biosynthesis, mutants accumulate flavonoid pigments in their seed coat, putative oxidoreductase. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium.	O.I.	C.G.	H.G.
42.4	99.8	109.8	At5g15530	831406	BCCP2 (BIOTIN CARBOXYL CARRIER PROTEIN 2)	biotin carboxyl carrier protein isoform 2 (BCCP2) mRNA,	O.I.	C.G.	H.G.
42.2	99.8	107.9	At5g62150	836335	peptidoglycan-binding LysM domain-containing protein	F:molecular_function unknown;P:cell wall macromolecule catabolic process;C:endomembrane system;P	O.I.	C.G.	H.G.
42.0	99.8	37.3	At1g05280	837026	fringe-related protein	F:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:cellular_component unknown;PFMO	O.I.	C.G.	H.G.
41.8	99.8	471.7	At1g03880	839383	CRU2 (CRUCIFERIN 2)	Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.	O.I.	C.G.	H.G.
41.7	99.8	329.0	At5g40420	834040	OLEO2 (OLEOSIN 2)	Encodes oleosin2, a protein found in oil bodies, involved in seed lipid accumulation. Suppression of OLEO1 (and OLEO2) resulted in an aberrant phenotype of embryo cells that contain unusually large oilbodies that are not normally observed in seeds. Changes in the size of oilbodies caused disruption of storage organelles, altering accumulation of lipids and proteins and causing delay in germination. Functions in freezing tolerance of seeds.	O.I.	C.G.	H.G.
41.3	99.8	34.4	At3g26790	822293	FUS3 (FUSCA 3)	Transcriptional factor with high similarity to the B3 region of the VP1/ABI3-like proteins. Full length FUS3 protein binds to the highly conserved RY motif [DNA motif CATGCA(TG)], present in many seed-specific promoters, and the B3 domains of this transcription factor is necessary for the specific interaction with the RY element. Transcriptional activity of FUS3 requires the B3 DNA-binding domain and an activation domain. FUS3 specifies cotyledon identity. Regulator of gene expression during late embryogenesis. Involved in the control foliar organ identity in Arabidopsis by regulating the synthesis of two hormones, abscisic acid and gibberellin. FUS3 together with LEC1 positively regulate the abundance of the ABI3 protein in the seed.	O.I.	C.G.	H.G.
40.8	99.8	443.3	At5g44120	834435	CRA1 (CRUCIFERINA)	Encodes a 12S seed storage protein. The Landsberg erecta genome contains another copy of 12S globulin gene, CRA2, which is located tandemly with CRA1. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.	O.I.	C.G.	H.G.
40.7	99.8	32.0	At5g07260	830617	homeobox protein-related	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
40.4	99.8	61.4	At1g11170	837658	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POB	O.I.	C.G.	H.G.

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GSM ID	GSM131691
Assay name	ATGE_78_D
GSE experiment	GSE5634: AtGenExpress: Developmental series (siliques and seeds)

Microarray experiments to specifically-expressed genes

GSM ID GSM131691 Assay name ATGE_78_D GSE experiment GSE5634: AtGenExpress: Developmental series (siliques and seeds)

GSM ID GSM131691

Assay name ATGE_78_D

GSE experiment GSE5634: AtGenExpress: Developmental series (siliques and seeds)