Microarray experiments to specifically-expressed genes

GSM ID GSM131690
Assay name ATGE_77_F
GSE experiment GSE5634: AtGenExpress: Developmental series (siliques and seeds)

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
565.8100.033.0At3g21850821739ASK9 (ARABIDOPSIS SKP1-LIKE 9)one of Arabidopsis SKP1 homologuesO.I.C.G.H.G.
421.1100.0281.1At1g23200838928pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFAOMO.I.C.G.H.G.
415.4100.0157.8At2g25540817092CESA10 (CELLULOSE SYNTHASE 10)cellulose synthaseO.I.C.G.H.G.
369.4100.0291.3At5g50750835147RGP4 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 4)reversibly glycosylated polypeptide RGP-4 (RGP4)O.I.C.G.H.G.
302.7100.0197.2At4g11180826720disease resistance-responsive family protein / dirigent family proteinF:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;PO.I.C.G.H.G.
286.3100.091.1At1g43640840948AtTLP5 (TUBBY LIKE PROTEIN 5)Member of TLP familyO.I.C.G.H.G.
279.1100.046.5At5g45770834616AtRLP55 (Receptor Like Protein 55)F:protein binding;P:unknown;C:unknown;PMBOFAVO.I.C.G.H.G.
251.9100.0262.4At1g62070842503unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBFO.I.C.G.H.G.
234.9100.095.6At2g28650817414ATEXO70H8 (exocyst subunit EXO70 family protein H8)A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.O.I.C.G.H.G.
210.3100.074.8At1g71890843520SUC5Encodes a sucrose transporter that is expressed in the endosperm. Mutants have delayed accumulation of fatty acids and embryo maturation.O.I.C.G.H.G.
199.2100.090.8At2g23550816887MES6 (METHYL ESTERASE 6)Encodes a protein predicted to act as a carboxylesterase. It has similarity to the SABP2 methyl salicylate esterase from tobacco but no enzymatic activity has been identified for this protein.O.I.C.G.H.G.
187.4100.0179.4At5g60630836184unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POO.I.C.G.H.G.
165.2100.0105.9At5g38180833798protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
164.299.9367.6At1g56100842062pectinesterase inhibitor domain-containing proteinF:enzyme inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;OMFPBAVO.I.C.G.H.G.
153.099.9102.2At1g79840844323GL2 (GLABRA 2)Glabra 2, a homeodomain protein affects epidermal cell identity including trichomes, root hairs, and seed coat. It also down-regulates seed oil content. Expressed in atrichoblasts and required to suppress root hair development. Also expressed abundantly during early seed development. Directly regulated by WER.O.I.C.G.H.G.
152.499.924.4At5g52500835326unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
149.299.987.9At5g47670834818NF-YB6 (NUCLEAR FACTOR Y, SUBUNIT B6)F:transcription activator binding, transcription factor activity, transcription activator activity;P:positive regulation of gene-specific transcription, regulation of transcription;C:nucleus, intracellular;MPFOAO.I.C.G.H.G.
148.999.9134.3At1g65480842859FT (FLOWERING LOCUS T)FT, together with LFY, promotes flowering and is antagonistic with its homologous gene, TERMINAL FLOWER1 (TFL1). FT is expressed in leaves and is induced by long day treatment. Either the FT mRNA or protein is translocated to the shoot apex where it induces its own expression. Recent data suggests that FT protein acts as a long-range signal. FT is a target of CO and acts upstream of SOC1.O.I.C.G.H.G.
138.499.980.8At1g71250843466GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, lipase activity, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOMO.I.C.G.H.G.
132.899.987.8At5g47530834803auxin-responsive protein, putativeF:unknown;P:multicellular organismal development;C:membrane;PMFOBO.I.C.G.H.G.
128.199.9201.5At1g61720842469BAN (BANYULS)Negative regulator of flavonoid biosynthesis, mutants accumulate flavonoid pigments in their seed coat, putative oxidoreductase. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium.O.I.C.G.H.G.
115.399.996.9At3g08900820039RGP3 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 3)Encodes a reversible autoglycosylated protein peripherally associated with cell membranes. Highly expressed in roots ans suspension-cultured cells.O.I.C.G.H.G.
110.599.989.0At2g23580816890MES4 (METHYL ESTERASE 4)Encodes a protein shown to have carboxylesterase activity and methyl salicylate esterase activity in vitro. This protein does not act on methyl IAA, methyl JA, MeGA4, or MEGA9 in vitro.O.I.C.G.H.G.
109.499.959.2At3g25260822120proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport;C:membrane;BPMOFO.I.C.G.H.G.
107.999.9156.2At3g24250822012glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMPOFVAO.I.C.G.H.G.
100.499.967.2At1g50650841487stigma-specific Stig1 family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPFOMO.I.C.G.H.G.
99.799.967.1At5g03190831909CPUORF47 (CONSERVED PEPTIDE UPSTREAM OPEN READING FRAME 47)F:molecular_function unknown;P:biological_process unknown;C:unknown;POBO.I.C.G.H.G.
97.899.9233.4At2g46960819310CYP709B1member of CYP709BO.I.C.G.H.G.
96.299.9207.6At5g59845836106gibberellin-regulated family proteinF:molecular_function unknown;P:response to gibberellin stimulus;C:endomembrane system;PO.I.C.G.H.G.
95.899.923.3At1g62900842591O-methyltransferase, putativeF:O-methyltransferase activity;P:unknown;C:cytosol;PBFOMO.I.C.G.H.G.
91.599.994.4At4g26590828766OPT5 (OLIGOPEPTIDE TRANSPORTER 5)oligopeptide transporterO.I.C.G.H.G.
89.299.916.1At1g78390844175NCED9 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 9)Encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. The expression of this gene increases during the first 6h of imbibition.O.I.C.G.H.G.
85.199.995.9At2g35290818096unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
83.399.9223.5At3g20210821565DELTA-VPEEncodes a vacuolar processing enzyme with caspase-1-like activity that is specifically expressed in inner integument of developing seeds. Mutants display abnormal seed coat development. It is speculated to be involved in cell death of limited cell layers, the purpose of which is to form a seed coat.O.I.C.G.H.G.
83.299.931.0At2g32370817798HDG3 (HOMEODOMAIN GLABROUS 3)Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Together with ATML1 and PDF2, it is involved in cotyledon development.O.I.C.G.H.G.
82.799.9102.5At5g15740831430unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
80.999.9225.4At1g04660839454glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBOPFVAO.I.C.G.H.G.
80.799.951.6At5g57520835856ZFP2 (ZINC FINGER PROTEIN 2)Encodes a zinc finger protein containing only a single zinc finger.O.I.C.G.H.G.
79.599.949.7At1g71690843495unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBO.I.C.G.H.G.
79.399.989.0At5g57920835903plastocyanin-like domain-containing proteinF:electron carrier activity, copper ion binding;P:unknown;C:endomembrane system;PO.I.C.G.H.G.
79.199.964.5At5g58500835963LSH5 (LIGHT SENSITIVE HYPOCOTYLS 5)F:molecular_function unknown;P:biological_process unknown;C:unknown;PMO.I.C.G.H.G.
78.299.920.9At1g28590839759lipase, putativeF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
78.199.9436.5At1g62000842495unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPOFO.I.C.G.H.G.
77.499.940.9At5g22810832344GDSL-motif lipase, putativeF:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
75.399.926.6At3g11180820289oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:oxidoreductase activity, iron ion binding;P:unknown;C:cellular_component unknown;POBFMO.I.C.G.H.G.
70.799.941.6At3g54320824599WRI1 (WRINKLED 1)WRINKLED1 encodes transcription factor of the AP2/ERWEBP class. Protein has two plant-specific (AP2/EREB) DNA-binding domains and is involved in the control of storage compound biosynthesis in Arabidopsis. Mutants have wrinkled seed phenotype, due to a defect in the incorporation of sucrose and glucose into triacylglycerols. Transgenic sGsL plants (21-day-old) grown on 6% sucrose for 24 hours had 2-fold increase in levels of expressions (sGsL line carries a single copy of T-DNA containing the Spomin::GUS-Spomin::LUC dual reporter genes in the upper arm of chromosome 5 of ecotype Col-0. The sporamin .minimal. promoter directs sugar-inducible expression of the LUC and GUS reporters in leaves). Regulation by LEC2 promotes fatty acid accumulation during seed maturation.O.I.C.G.H.G.
69.999.926.8At5g26120832681ASD2 (ALPHA-L-ARABINOFURANOSIDASE 2)F:hydrolase activity, acting on glycosyl bonds, alpha-N-arabinofuranosidase activity;P:L-arabinose metabolic process;C:endomembrane system;BFPOO.I.C.G.H.G.
69.099.9341.4At5g38160833796protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
68.499.9138.7At5g48100834862TT10 (TRANSPARENT TESTA 10)Encodes a protein that is similar to laccase-like polyphenol oxidases. Involved in lignin and flavonoids biosynthesis. It has four conserved copper binding domains. Expressed in developing testa, where it colocalizes with the flavonoid end products proanthocyanidins and flavonols. Mutant plants exhibited a delay in developmentally determined browning of the testa, characterized by the pale brown color of seed coat. The tt10 mutant seeds accumulate more epicatechin monomers and more soluble proanthocyanidins than wild-type seeds. Flavonol composition was also affected in tt10 seeds, which exhibited a higher ratio of quercetin rhamnoside monomers versus dimers than wild-type seeds.O.I.C.G.H.G.
67.299.860.6At3g14760820704unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
66.599.862.6At1g05160839311CYP88A3 (CYTOCHROME P450 88 A3)Encodes an ent-kaurenoic acid hydroxylase, a member of the CYP88A cytochrome p450 family.O.I.C.G.H.G.
65.599.8125.0At1g56170842070NF-YC2 (NUCLEAR FACTOR Y, SUBUNIT C2)Encodes a protein with similarity to a subunit of the CCAAT promoter motif binding complex of yeast.One of two members of this class (HAP5B) and expressed in vegetative and reproductive tissuesO.I.C.G.H.G.
63.899.8101.1At5g50260835091cysteine proteinase, putativeF:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAFO.I.C.G.H.G.
61.999.8300.2At4g15750827253invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;POO.I.C.G.H.G.
61.799.825.8At2g47750819387GH3.9 (PUTATIVE INDOLE-3-ACETIC ACID-AMIDO SYNTHETASE GH3.9)F:molecular_function unknown;P:response to auxin stimulus;C:chloroplast envelope;POBMFO.I.C.G.H.G.
61.299.886.3At1g19640838551JMT (JASMONIC ACID CARBOXYL METHYLTRANSFERASE)Encodes a S-adenosyl-L-methionine:jasmonic acid carboxyl methyltransferase that catalyzes the formation of methyljasmonate from jasmonic acid. Its expression is induced in response to wounding or methyljasmonate treatment.O.I.C.G.H.G.
60.099.8175.6At5g49180834977pectinesterase family proteinEncodes a putative pectin methylesterase. The gene is preferentially expressed in floral buds.O.I.C.G.H.G.
58.799.836.1At5g13670831212nodulin MtN21 family proteinF:unknown;P:unknown;C:endomembrane system, membrane;BOPAMO.I.C.G.H.G.
58.199.858.5At5g39220833918hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:unknown;C:unknown;BOMPAFO.I.C.G.H.G.
56.199.819.7At2g47670819380invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
55.899.823.8At4g00220828084JLO (JAGGED LATERAL ORGANS)Encodes a protein containing a LOB domain that is expressed in embryos, flower primordium and lateral floral organ boundaries. Overexpression is correlated with activation of STM and KNAT1 and down regulation of PIN1 and reduced auxin transport levels. Ectopic expression in plants results in premature termination of the shoot apical meristem and small, lobed leaves.O.I.C.G.H.G.
54.899.8491.5At4g12960826908gamma interferon responsive lysosomal thiol reductase family protein / GILT family proteinF:catalytic activity;P:biological_process unknown;C:endomembrane system;MPOFO.I.C.G.H.G.
54.699.8122.7At5g62150836335peptidoglycan-binding LysM domain-containing proteinF:molecular_function unknown;P:cell wall macromolecule catabolic process;C:endomembrane system;PO.I.C.G.H.G.
53.199.871.3At1g10540837595xanthine/uracil permease family proteinF:transmembrane transporter activity;P:transport;C:membrane;BOMPFAVO.I.C.G.H.G.
52.999.8172.6At2g19570816476CDA1 (CYTIDINE DEAMINASE 1)Encodes a cytidine deaminase that deaminates cytidine and deoxycytidine and is competitively inhibited by cytosine-containing compounds.O.I.C.G.H.G.
52.699.8118.5At5g07990830693TT7 (TRANSPARENT TESTA 7)Required for flavonoid 3' hydroxylase activity.O.I.C.G.H.G.
50.799.855.0At4g37050829859PLP4 (PATATIN-LIKE PROTEIN 4)F:nutrient reservoir activity;P:metabolic process, lipid metabolic process;C:cellular_component unknown;PBOMFO.I.C.G.H.G.
49.699.874.3At2g43060818908transcription factorF:transcription factor activity;P:regulation of transcription;C:nucleus;PO.I.C.G.H.G.
47.599.8236.6At5g51210835196OLEO3 (OLEOSIN3)Encodes oleosin3, a protein found in oil bodies, involved in seed lipid accumulation.O.I.C.G.H.G.
46.399.822.9At4g09820826571TT8 (TRANSPARENT TESTA 8)TT8 is a regulation factor that acts in a concerted action with TT1, PAP1 and TTG1 on the regulation of flavonoid pathways, namely proanthocyanidin and anthocyanin biosynthesis. Affects dihydroflavonol 4-reductase gene expression. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium. Also important for important for marginal trichome development.O.I.C.G.H.G.
45.899.818.4At3g62610825435ATMYB11 (MYB DOMAIN PROTEIN 11)Member of the R2R3 factor gene family.O.I.C.G.H.G.
45.299.8123.4At4g12890826901gamma interferon responsive lysosomal thiol reductase family protein / GILT family proteinF:catalytic activity;P:biological_process unknown;C:endomembrane system;MPOFO.I.C.G.H.G.
44.899.829.2At5g01200831676myb family transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;POMFO.I.C.G.H.G.
44.799.835.6At1g34580840362monosaccharide transporter, putativeF:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOAO.I.C.G.H.G.
44.699.835.3At5g47150834761YDG/SRA domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOBFO.I.C.G.H.G.
44.599.8182.8At2g34700818035pollen Ole e 1 allergen and extensin family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
43.599.817.2At5g39130833906germin-like protein, putativeF:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFOBO.I.C.G.H.G.
43.499.840.0At2g29370817486tropinone reductase, putative / tropine dehydrogenase, putativeF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAVO.I.C.G.H.G.
43.399.856.2At2g22620816793lyaseF:lyase activity;P:carbohydrate metabolic process;C:unknown;PFBOO.I.C.G.H.G.
43.199.819.3At5g53100835390oxidoreductase, putativeF:oxidoreductase activity, binding, catalytic activity;P:multicellular organismal development, metabolic process;C:cellular_component unknown;BOMFPAO.I.C.G.H.G.
42.599.824.4At1g71120843452GLIP6Contains lipase signature motif and GDSL domain.O.I.C.G.H.G.
42.299.828.7At3g52550824421-F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFPVBO.I.C.G.H.G.
40.899.827.9At1g02720839475GATL5 (GALACTURONOSYLTRANSFERASE 5)Encodes a protein with putative galacturonosyltransferase activity.O.I.C.G.H.G.
40.499.8101.6At1g22480838854plastocyanin-like domain-containing proteinF:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;PFOO.I.C.G.H.G.
39.699.8130.3At5g44030834426CESA4 (CELLULOSE SYNTHASE A4)Encodes a cellulose synthase involved in secondary cell wall biosynthesis. Confers resistance towards bacterial and fungal pathogens, independent of salicylic acid, ethylene and jasmonate signaling.O.I.C.G.H.G.
39.699.837.3At1g60970842388clathrin adaptor complex small chain family proteinF:protein binding;P:intracellular protein transport, transport, vesicle-mediated transport;C:membrane coat, clathrin vesicle coat;MPFOO.I.C.G.H.G.
38.599.8154.3At1g29050839779unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;POO.I.C.G.H.G.
38.599.849.4At5g54530835541unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
37.899.815.9At2g14690815957endo-1,4-beta-xylanase/ hydrolase, hydrolyzing O-glycosyl compoundsEncodes a putative glycosyl hydrolase family 10 protein (xylanase).O.I.C.G.H.G.
37.599.769.7At1g01900839318SBTI1.1Encodes AtSBT1.1, a subtilisin-like serine protease. Cleaves the phytosulfokine AtPSK4, a growth promoting peptide.O.I.C.G.H.G.
37.199.755.9At1g09550837481pectinacetylesterase, putativeF:carboxylesterase activity;P:biological_process unknown;C:endomembrane system;PMOBO.I.C.G.H.G.
36.999.7516.6At5g59310836050LTP4 (LIPID TRANSFER PROTEIN 4)Encodes a member of the lipid transfer protein family. Proteins of this family are generally small (~9 kD), basic, expressed abundantly and contain eight Cys residues. The proteins can bind fatty acids and acylCoA esters and can transfer several different phospholipids. They are localized to the cell wall. The mRNA is present in flowers and siliques, and is strongly up-regulated by abscisic acid. Predicted to be a member of PR-14 pathogenesis-related protein family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.O.I.C.G.H.G.
36.799.734.8At1g05280837026fringe-related proteinF:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:cellular_component unknown;PFMOO.I.C.G.H.G.
35.899.773.5At5g65710836700HSL2 (HAESA-Like 2)F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
35.799.720.1At1g47610841170transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:heterotrimeric G-protein complex;MFOBPAO.I.C.G.H.G.
35.399.714.6At1g19190838502hydrolaseF:hydrolase activity;P:metabolic process;C:cellular_component unknown;BOPMFAVO.I.C.G.H.G.
35.099.723.3At1g205008386384-coumarate-CoA ligaseF:4-coumarate-CoA ligase activity;P:phenylpropanoid metabolic process, metabolic process;C:unknown;BOMFPAVO.I.C.G.H.G.
34.999.7462.9At5g38170833797protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
34.999.7238.5At2g43050818907ATPMEPCRDF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMO.I.C.G.H.G.
34.299.7201.2At4g12910826903scpl20 (serine carboxypeptidase-like 20)F:serine-type carboxypeptidase activity;P:proteolysis;C:vacuole;PMFOBO.I.C.G.H.G.



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