Microarray experiments to specifically-expressed genes

GSM ID GSM131689
Assay name ATGE_77_E
GSE experiment GSE5634: AtGenExpress: Developmental series (siliques and seeds)

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
434.3100.0161.4At2g25540817092CESA10 (CELLULOSE SYNTHASE 10)cellulose synthaseO.I.C.G.H.G.
408.3100.028.0At3g21850821739ASK9 (ARABIDOPSIS SKP1-LIKE 9)one of Arabidopsis SKP1 homologuesO.I.C.G.H.G.
334.2100.0114.0At2g28650817414ATEXO70H8 (exocyst subunit EXO70 family protein H8)A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.O.I.C.G.H.G.
332.2100.0249.7At1g23200838928pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFAOMO.I.C.G.H.G.
308.4100.0199.0At4g11180826720disease resistance-responsive family protein / dirigent family proteinF:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;PO.I.C.G.H.G.
307.0100.0265.5At5g50750835147RGP4 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 4)reversibly glycosylated polypeptide RGP-4 (RGP4)O.I.C.G.H.G.
291.7100.092.0At1g43640840948AtTLP5 (TUBBY LIKE PROTEIN 5)Member of TLP familyO.I.C.G.H.G.
249.4100.044.0At5g45770834616AtRLP55 (Receptor Like Protein 55)F:protein binding;P:unknown;C:unknown;PMBOFAVO.I.C.G.H.G.
238.2100.0255.2At1g62070842503unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBFO.I.C.G.H.G.
224.7100.077.3At1g71890843520SUC5Encodes a sucrose transporter that is expressed in the endosperm. Mutants have delayed accumulation of fatty acids and embryo maturation.O.I.C.G.H.G.
205.2100.092.2At2g23550816887MES6 (METHYL ESTERASE 6)Encodes a protein predicted to act as a carboxylesterase. It has similarity to the SABP2 methyl salicylate esterase from tobacco but no enzymatic activity has been identified for this protein.O.I.C.G.H.G.
185.7100.0178.6At5g60630836184unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POO.I.C.G.H.G.
183.4100.0111.6At5g38180833798protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
179.5100.0110.7At1g79840844323GL2 (GLABRA 2)Glabra 2, a homeodomain protein affects epidermal cell identity including trichomes, root hairs, and seed coat. It also down-regulates seed oil content. Expressed in atrichoblasts and required to suppress root hair development. Also expressed abundantly during early seed development. Directly regulated by WER.O.I.C.G.H.G.
171.1100.0143.9At1g65480842859FT (FLOWERING LOCUS T)FT, together with LFY, promotes flowering and is antagonistic with its homologous gene, TERMINAL FLOWER1 (TFL1). FT is expressed in leaves and is induced by long day treatment. Either the FT mRNA or protein is translocated to the shoot apex where it induces its own expression. Recent data suggests that FT protein acts as a long-range signal. FT is a target of CO and acts upstream of SOC1.O.I.C.G.H.G.
161.699.991.5At5g47670834818NF-YB6 (NUCLEAR FACTOR Y, SUBUNIT B6)F:transcription activator binding, transcription factor activity, transcription activator activity;P:positive regulation of gene-specific transcription, regulation of transcription;C:nucleus, intracellular;MPFOAO.I.C.G.H.G.
160.999.925.1At5g52500835326unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
140.199.990.2At5g47530834803auxin-responsive protein, putativeF:unknown;P:multicellular organismal development;C:membrane;PMFOBO.I.C.G.H.G.
133.699.9205.9At1g61720842469BAN (BANYULS)Negative regulator of flavonoid biosynthesis, mutants accumulate flavonoid pigments in their seed coat, putative oxidoreductase. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium.O.I.C.G.H.G.
133.099.9104.1At3g08900820039RGP3 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 3)Encodes a reversible autoglycosylated protein peripherally associated with cell membranes. Highly expressed in roots ans suspension-cultured cells.O.I.C.G.H.G.
131.599.9329.0At1g56100842062pectinesterase inhibitor domain-containing proteinF:enzyme inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;OMFPBAVO.I.C.G.H.G.
128.999.978.0At1g71250843466GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, lipase activity, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOMO.I.C.G.H.G.
128.999.964.3At3g25260822120proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport;C:membrane;BPMOFO.I.C.G.H.G.
121.699.918.8At1g78390844175NCED9 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 9)Encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. The expression of this gene increases during the first 6h of imbibition.O.I.C.G.H.G.
120.399.973.7At5g03190831909CPUORF47 (CONSERVED PEPTIDE UPSTREAM OPEN READING FRAME 47)F:molecular_function unknown;P:biological_process unknown;C:unknown;POBO.I.C.G.H.G.
111.199.970.6At1g50650841487stigma-specific Stig1 family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPFOMO.I.C.G.H.G.
105.999.924.5At1g62900842591O-methyltransferase, putativeF:O-methyltransferase activity;P:unknown;C:cytosol;PBFOMO.I.C.G.H.G.
103.899.9153.3At3g24250822012glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMPOFVAO.I.C.G.H.G.
100.299.984.8At2g23580816890MES4 (METHYL ESTERASE 4)Encodes a protein shown to have carboxylesterase activity and methyl salicylate esterase activity in vitro. This protein does not act on methyl IAA, methyl JA, MeGA4, or MEGA9 in vitro.O.I.C.G.H.G.
98.999.9249.2At1g04660839454glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBOPFVAO.I.C.G.H.G.
98.699.955.4At1g71690843495unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBO.I.C.G.H.G.
96.499.9231.7At2g46960819310CYP709B1member of CYP709BO.I.C.G.H.G.
94.999.996.1At4g26590828766OPT5 (OLIGOPEPTIDE TRANSPORTER 5)oligopeptide transporterO.I.C.G.H.G.
92.899.932.7At2g32370817798HDG3 (HOMEODOMAIN GLABROUS 3)Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Together with ATML1 and PDF2, it is involved in cotyledon development.O.I.C.G.H.G.
92.499.9203.6At5g59845836106gibberellin-regulated family proteinF:molecular_function unknown;P:response to gibberellin stimulus;C:endomembrane system;PO.I.C.G.H.G.
90.899.999.1At2g35290818096unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
90.099.9232.2At3g20210821565DELTA-VPEEncodes a vacuolar processing enzyme with caspase-1-like activity that is specifically expressed in inner integument of developing seeds. Mutants display abnormal seed coat development. It is speculated to be involved in cell death of limited cell layers, the purpose of which is to form a seed coat.O.I.C.G.H.G.
88.799.954.1At5g57520835856ZFP2 (ZINC FINGER PROTEIN 2)Encodes a zinc finger protein containing only a single zinc finger.O.I.C.G.H.G.
88.699.994.1At5g57920835903plastocyanin-like domain-containing proteinF:electron carrier activity, copper ion binding;P:unknown;C:endomembrane system;PO.I.C.G.H.G.
82.699.9102.5At5g15740831430unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
80.899.927.5At3g11180820289oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:oxidoreductase activity, iron ion binding;P:unknown;C:cellular_component unknown;POBFMO.I.C.G.H.G.
80.599.9138.6At1g56170842070NF-YC2 (NUCLEAR FACTOR Y, SUBUNIT C2)Encodes a protein with similarity to a subunit of the CCAAT promoter motif binding complex of yeast.One of two members of this class (HAP5B) and expressed in vegetative and reproductive tissuesO.I.C.G.H.G.
73.699.920.3At1g28590839759lipase, putativeF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
73.599.942.5At3g54320824599WRI1 (WRINKLED 1)WRINKLED1 encodes transcription factor of the AP2/ERWEBP class. Protein has two plant-specific (AP2/EREB) DNA-binding domains and is involved in the control of storage compound biosynthesis in Arabidopsis. Mutants have wrinkled seed phenotype, due to a defect in the incorporation of sucrose and glucose into triacylglycerols. Transgenic sGsL plants (21-day-old) grown on 6% sucrose for 24 hours had 2-fold increase in levels of expressions (sGsL line carries a single copy of T-DNA containing the Spomin::GUS-Spomin::LUC dual reporter genes in the upper arm of chromosome 5 of ecotype Col-0. The sporamin .minimal. promoter directs sugar-inducible expression of the LUC and GUS reporters in leaves). Regulation by LEC2 promotes fatty acid accumulation during seed maturation.O.I.C.G.H.G.
73.499.922.5At2g47670819380invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
71.899.961.5At5g58500835963LSH5 (LIGHT SENSITIVE HYPOCOTYLS 5)F:molecular_function unknown;P:biological_process unknown;C:unknown;PMO.I.C.G.H.G.
70.399.9140.7At5g48100834862TT10 (TRANSPARENT TESTA 10)Encodes a protein that is similar to laccase-like polyphenol oxidases. Involved in lignin and flavonoids biosynthesis. It has four conserved copper binding domains. Expressed in developing testa, where it colocalizes with the flavonoid end products proanthocyanidins and flavonols. Mutant plants exhibited a delay in developmentally determined browning of the testa, characterized by the pale brown color of seed coat. The tt10 mutant seeds accumulate more epicatechin monomers and more soluble proanthocyanidins than wild-type seeds. Flavonol composition was also affected in tt10 seeds, which exhibited a higher ratio of quercetin rhamnoside monomers versus dimers than wild-type seeds.O.I.C.G.H.G.
69.999.9413.1At1g62000842495unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPOFO.I.C.G.H.G.
69.999.9105.8At5g50260835091cysteine proteinase, putativeF:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAFO.I.C.G.H.G.
69.899.964.1At1g05160839311CYP88A3 (CYTOCHROME P450 88 A3)Encodes an ent-kaurenoic acid hydroxylase, a member of the CYP88A cytochrome p450 family.O.I.C.G.H.G.
69.599.9342.6At5g38160833796protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
69.599.938.8At5g22810832344GDSL-motif lipase, putativeF:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
66.699.862.6At5g39220833918hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:unknown;C:unknown;BOMPAFO.I.C.G.H.G.
66.099.826.7At2g47750819387GH3.9 (PUTATIVE INDOLE-3-ACETIC ACID-AMIDO SYNTHETASE GH3.9)F:molecular_function unknown;P:response to auxin stimulus;C:chloroplast envelope;POBMFO.I.C.G.H.G.
65.499.8132.2At5g07990830693TT7 (TRANSPARENT TESTA 7)Required for flavonoid 3' hydroxylase activity.O.I.C.G.H.G.
64.999.888.9At1g19640838551JMT (JASMONIC ACID CARBOXYL METHYLTRANSFERASE)Encodes a S-adenosyl-L-methionine:jasmonic acid carboxyl methyltransferase that catalyzes the formation of methyljasmonate from jasmonic acid. Its expression is induced in response to wounding or methyljasmonate treatment.O.I.C.G.H.G.
62.899.825.3At4g00220828084JLO (JAGGED LATERAL ORGANS)Encodes a protein containing a LOB domain that is expressed in embryos, flower primordium and lateral floral organ boundaries. Overexpression is correlated with activation of STM and KNAT1 and down regulation of PIN1 and reduced auxin transport levels. Ectopic expression in plants results in premature termination of the shoot apical meristem and small, lobed leaves.O.I.C.G.H.G.
61.699.8178.0At5g49180834977pectinesterase family proteinEncodes a putative pectin methylesterase. The gene is preferentially expressed in floral buds.O.I.C.G.H.G.
60.599.860.1At4g37050829859PLP4 (PATATIN-LIKE PROTEIN 4)F:nutrient reservoir activity;P:metabolic process, lipid metabolic process;C:cellular_component unknown;PBOMFO.I.C.G.H.G.
60.499.876.1At1g10540837595xanthine/uracil permease family proteinF:transmembrane transporter activity;P:transport;C:membrane;BOMPFAVO.I.C.G.H.G.
59.899.8294.9At4g15750827253invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;POO.I.C.G.H.G.
59.899.833.7At5g01200831676myb family transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;POMFO.I.C.G.H.G.
57.399.840.3At1g34580840362monosaccharide transporter, putativeF:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOAO.I.C.G.H.G.
56.799.8178.7At2g19570816476CDA1 (CYTIDINE DEAMINASE 1)Encodes a cytidine deaminase that deaminates cytidine and deoxycytidine and is competitively inhibited by cytosine-containing compounds.O.I.C.G.H.G.
55.699.823.9At5g26120832681ASD2 (ALPHA-L-ARABINOFURANOSIDASE 2)F:hydrolase activity, acting on glycosyl bonds, alpha-N-arabinofuranosidase activity;P:L-arabinose metabolic process;C:endomembrane system;BFPOO.I.C.G.H.G.
55.099.878.2At2g43060818908transcription factorF:transcription factor activity;P:regulation of transcription;C:nucleus;PO.I.C.G.H.G.
53.999.838.8At5g47150834761YDG/SRA domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOBFO.I.C.G.H.G.
52.999.8249.7At5g51210835196OLEO3 (OLEOSIN3)Encodes oleosin3, a protein found in oil bodies, involved in seed lipid accumulation.O.I.C.G.H.G.
50.899.831.1At1g02720839475GATL5 (GALACTURONOSYLTRANSFERASE 5)Encodes a protein with putative galacturonosyltransferase activity.O.I.C.G.H.G.
50.799.8118.2At5g62150836335peptidoglycan-binding LysM domain-containing proteinF:molecular_function unknown;P:cell wall macromolecule catabolic process;C:endomembrane system;PO.I.C.G.H.G.
50.299.823.9At4g09820826571TT8 (TRANSPARENT TESTA 8)TT8 is a regulation factor that acts in a concerted action with TT1, PAP1 and TTG1 on the regulation of flavonoid pathways, namely proanthocyanidin and anthocyanin biosynthesis. Affects dihydroflavonol 4-reductase gene expression. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium. Also important for important for marginal trichome development.O.I.C.G.H.G.
49.299.826.3At1g71120843452GLIP6Contains lipase signature motif and GDSL domain.O.I.C.G.H.G.
49.199.823.6At1g47610841170transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:heterotrimeric G-protein complex;MFOBPAO.I.C.G.H.G.
48.499.851.5At3g14760820704unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
47.799.812.8At3g52970824463CYP76G1member of CYP76GO.I.C.G.H.G.
47.599.858.9At2g22620816793lyaseF:lyase activity;P:carbohydrate metabolic process;C:unknown;PFBOO.I.C.G.H.G.
46.699.820.0At5g53100835390oxidoreductase, putativeF:oxidoreductase activity, binding, catalytic activity;P:multicellular organismal development, metabolic process;C:cellular_component unknown;BOMFPAO.I.C.G.H.G.
46.499.8186.7At2g34700818035pollen Ole e 1 allergen and extensin family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
46.199.832.0At5g13670831212nodulin MtN21 family proteinF:unknown;P:unknown;C:endomembrane system, membrane;BOPAMO.I.C.G.H.G.
45.199.8446.0At4g12960826908gamma interferon responsive lysosomal thiol reductase family protein / GILT family proteinF:catalytic activity;P:biological_process unknown;C:endomembrane system;MPOFO.I.C.G.H.G.
45.099.8123.2At4g12890826901gamma interferon responsive lysosomal thiol reductase family protein / GILT family proteinF:catalytic activity;P:biological_process unknown;C:endomembrane system;MPOFO.I.C.G.H.G.
44.799.838.5At1g05280837026fringe-related proteinF:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:cellular_component unknown;PFMOO.I.C.G.H.G.
43.699.834.9At1g19940838583AtGH9B5 (Arabidopsis thaliana Glycosyl Hydrolase 9B5)F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOFO.I.C.G.H.G.
42.799.8196.3At2g38900818474serine protease inhibitor, potato inhibitor I-type family proteinPredicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family. Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860.O.I.C.G.H.G.
42.699.8135.2At5g44030834426CESA4 (CELLULOSE SYNTHASE A4)Encodes a cellulose synthase involved in secondary cell wall biosynthesis. Confers resistance towards bacterial and fungal pathogens, independent of salicylic acid, ethylene and jasmonate signaling.O.I.C.G.H.G.
42.299.883.9At5g07200830611YAP169encodes a gibberellin 20-oxidase.O.I.C.G.H.G.
41.599.828.5At3g52550824421-F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFPVBO.I.C.G.H.G.
41.599.816.8At5g39130833906germin-like protein, putativeF:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFOBO.I.C.G.H.G.
41.399.873.2At1g01900839318SBTI1.1Encodes AtSBT1.1, a subtilisin-like serine protease. Cleaves the phytosulfokine AtPSK4, a growth promoting peptide.O.I.C.G.H.G.
41.099.8159.3At1g29050839779unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;POO.I.C.G.H.G.
40.799.838.7At2g29370817486tropinone reductase, putative / tropine dehydrogenase, putativeF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAVO.I.C.G.H.G.
40.699.817.4At3g62610825435ATMYB11 (MYB DOMAIN PROTEIN 11)Member of the R2R3 factor gene family.O.I.C.G.H.G.
40.599.825.1At1g205008386384-coumarate-CoA ligaseF:4-coumarate-CoA ligase activity;P:phenylpropanoid metabolic process, metabolic process;C:unknown;BOMFPAVO.I.C.G.H.G.
40.099.819.6At5g55950835693transporter-relatedF:unknown;P:N-terminal protein myristoylation;C:membrane;PMFOBAO.I.C.G.H.G.
39.999.8101.1At1g22480838854plastocyanin-like domain-containing proteinF:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;PFOO.I.C.G.H.G.
39.499.849.9At5g54530835541unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
38.199.845.9At3g15510820790ATNAC2 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 2)Note of caution: not to be confused with another protein (AtNAC6 locus AT5G39610) which on occasion has also been referred to as AtNAC2.O.I.C.G.H.G.
37.999.815.9At2g14690815957endo-1,4-beta-xylanase/ hydrolase, hydrolyzing O-glycosyl compoundsEncodes a putative glycosyl hydrolase family 10 protein (xylanase).O.I.C.G.H.G.
37.499.733.9At1g043808395352-oxoglutarate-dependent dioxygenase, putativeencodes a protein similar to a 2-oxoglutarate-dependent dioxygenaseO.I.C.G.H.G.
36.999.7159.7At4g36700829823cupin family proteinF:nutrient reservoir activity;P:biological_process unknown;C:endomembrane system;MOFBPVAO.I.C.G.H.G.



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