CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM131679

Assay name ATGE_51_A

GSE experiment GSE5633: AtGenExpress: Developmental series (shoots and stems)

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
56.5 99.8 121.1 At1g69120 843244 AP1 (APETALA1) Floral homeotic gene encoding a MADS domain protein homologous to SRF transcription factors. Specifies floral meristem and sepal identity. Required for the transcriptional activation of AGAMOUS. Interacts with LEAFY.Binds to promoter and regulates the expression of flowering time genes SVP, SOC1 and AGL24. O.I. C.G. H.G.
46.3 99.8 103.2 At5g20740 832197 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
40.6 99.8 87.6 At1g53160 841749 SPL4 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 4) Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR. O.I. C.G. H.G.
40.2 99.8 55.3 At3g06220 819796 DNA binding / transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P O.I. C.G. H.G.
34.9 99.7 68.1 At2g42200 818820 SPL9 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 9) Encodes a putative transcriptional regulator that is involved in the vegetative to reproductive phase transition. Expresssion is regulated by MIR156b. O.I. C.G. H.G.
33.3 99.7 25.8 At5g03390 831852 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
32.6 99.7 29.6 At1g75090 843846 methyladenine glycosylase family protein F:DNA-3-methyladenine glycosylase I activity, catalytic activity;P:DNA repair, base-excision repair;C:unknown;BOPAMF O.I. C.G. H.G.
31.2 99.7 18.6 At3g06160 819790 transcriptional factor B3 family protein F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;PO O.I. C.G. H.G.
31.1 99.7 48.2 At2g42800 818880 AtRLP29 (Receptor Like Protein 29) F:protein binding;P:unknown;C:anchored to membrane, plant-type cell wall;PMOBFA O.I. C.G. H.G.
30.9 99.7 404.5 At4g29030 829024 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVA O.I. C.G. H.G.
29.5 99.7 30.3 At3g11000 820271 - F:unknown;P:unknown;C:endomembrane system;POBFMV O.I. C.G. H.G.
29.5 99.7 24.4 At4g30130 829136 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PMF O.I. C.G. H.G.
29.1 99.7 62.1 At4g34400 829590 DNA binding / transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:endomembrane system;MOBFPVA O.I. C.G. H.G.
28.5 99.7 19.0 At4g00870 827990 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFO O.I. C.G. H.G.
28.0 99.7 57.6 At1g02800 839385 ATCEL2 Encodes a protein with similarity to endo-1,4-b-glucanases and is a member of Glycoside Hydrolase Family 9. CEL2 is induced by nemotodes and is expressed in syncitia induced by Heterodera schachtii.May be involved in the development and function of syncitia. O.I. C.G. H.G.
27.9 99.7 62.6 At1g24070 839019 ATCSLA10 encodes a gene similar to cellulose synthase O.I. C.G. H.G.
27.7 99.7 46.4 At5g50740 835146 metal ion binding F:metal ion binding;P:metal ion transport;C:cellular_component unknown;POMBFV O.I. C.G. H.G.
27.3 99.7 42.4 At2g34650 818030 PID (PINOID) Encodes a protein serine/threonine kinase that may act as a positive regulator of cellular auxin efflux, as a a binary switch for PIN polarity, and as a negative regulator of auxin signaling. Recessive mutants exhibit similar phenotypes as pin-formed mutants in flowers and inflorescence but distinct phenotypes in cotyledons and leaves. Expressed in the vascular tissue proximal to root and shoot meristems, shoot apex, and embryos. Expression is induced by auxin. Overexpression of the gene results in phenotypes in the root and shoot similar to those found in auxin-insensitive mutants. The protein physically interacts with TCH3 (TOUCH3) and PID-BINDING PROTEIN 1 (PBP1), a previously uncharacterized protein containing putative EF-hand calcium-binding motifs. Acts together with ENP (ENHANCER OF PINOID) to instruct precursor cells to elaborate cotyledons in the transition stage embryo. Interacts with PDK1. PID autophosphorylation is required for the ability of PID to phosphorylate an exogenous substrate. PID activation loop is required for PDK1-dependent PID phosphorylation and requires the PIF domain. Negative regulator of root hair growth. PID kinase activity is critical for the inhibition of root hair growth and for maintaining the proper subcellular localization of PID. O.I. C.G. H.G.
26.9 99.7 37.4 At1g27370 839626 squamosa promoter-binding protein-like 10 (SPL10) F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PM O.I. C.G. H.G.
26.6 99.7 94.0 At5g44620 834490 CYP706A3 member of CYP706A O.I. C.G. H.G.
26.1 99.7 65.1 At4g29700 829091 type I phosphodiesterase/nucleotide pyrophosphatase family protein F:hydrolase activity, catalytic activity;P:metabolic process, nucleotide metabolic process;C:vacuole;MBOFPAV O.I. C.G. H.G.
25.9 99.7 203.0 At5g08000 830694 E13L3 (GLUCAN ENDO-1,3-BETA-GLUCOSIDASE-LIKE PROTEIN 3) Encodes a member of the X8-GPI family of proteins. It localizes to the plasmodesmata and binds callose. O.I. C.G. H.G.
25.6 99.7 40.3 At3g13960 820609 AtGRF5 (GROWTH-REGULATING FACTOR 5) Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in root, shoot and flower. O.I. C.G. H.G.
25.3 99.6 29.1 At1g67040 843024 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMF O.I. C.G. H.G.
25.2 99.6 286.1 At1g52030 841632 MBP2 (MYROSINASE-BINDING PROTEIN 2) Similar to myrosinase binding proteins which may be involved in metabolizing glucosinolates and forming defense compounds to protect against herbivory. Also similar to lectins and other agglutinating factors. Expressed only in flowers. O.I. C.G. H.G.
25.0 99.6 43.0 At5g43020 834317 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
23.6 99.6 251.1 At3g28500 822480 60S acidic ribosomal protein P2 (RPP2C) F:structural constituent of ribosome;P:translational elongation;C:cytosol, cytosolic ribosome, ribosome, plasma membrane;MFOPAB O.I. C.G. H.G.
23.4 99.6 252.6 At1g62500 842547 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;MBPOFVA O.I. C.G. H.G.
23.0 99.6 34.5 At2g34190 817980 xanthine/uracil permease family protein F:transmembrane transporter activity;P:transport;C:membrane;BOMPFAV O.I. C.G. H.G.
22.4 99.6 55.4 At5g48360 834889 formin homology 2 domain-containing protein / FH2 domain-containing protein F:actin binding;P:cellular component organization, actin cytoskeleton organization;C:unknown;MPOFVBA O.I. C.G. H.G.
21.8 99.6 84.9 At1g75240 843861 AtHB33 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 33) F:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;PMOFBV O.I. C.G. H.G.
21.3 99.6 115.6 At2g33810 817948 SPL3 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 3) Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It binds DNA, may directly regulate AP1, and is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR. O.I. C.G. H.G.
20.9 99.6 64.0 At1g30330 839913 ARF6 (AUXIN RESPONSE FACTOR 6) Encodes a member of the auxin response factor family. Mediates auxin response via expression of auxin regulated genes. Acts redundantly with ARF8 to control stamen elongation and flower maturation. Expression of ARF6 is controlled by miR167. O.I. C.G. H.G.
20.8 99.6 100.9 At5g10400 830904 histone H3 F:DNA binding;P:nucleosome assembly;C:nucleus, chloroplast, nucleosome;MFPO O.I. C.G. H.G.
20.6 99.6 20.3 At1g75640 843899 leucine-rich repeat family protein / protein kinase family protein F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. C.G. H.G.
20.5 99.6 29.6 At4g15140 827180 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
20.0 99.6 60.1 At3g23890 821972 TOPII (TOPOISOMERASE II) Encodes a topoisomerase II that is highly expressed in young seedlings. The protein is localized in the nucleus and gene expression levels are increased in proliferative tissues. O.I. C.G. H.G.
19.7 99.6 109.9 At5g62210 836342 embryo-specific protein-related F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;MPOFVBA O.I. C.G. H.G.
19.6 99.6 120.5 At4g38660 830022 thaumatin, putative F:molecular_function unknown;P:response to other organism;C:anchored to membrane;PFMBOV O.I. C.G. H.G.
19.6 99.6 35.3 At4g29360 829057 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to plasma membrane, anchored to membrane;PFOB O.I. C.G. H.G.
19.5 99.6 72.2 At3g50070 824169 CYCD3 Encode CYCD3;3, a CYCD3 D-type cyclin. Important for determining cell number in developing lateral organs. Mediating cytokinin effects in apical growth and development. O.I. C.G. H.G.
19.5 99.6 43.4 At5g44560 834483 VPS2.2 F:unknown;P:vesicle-mediated transport;C:ESCRT III complex;MPFOB O.I. C.G. H.G.
19.4 99.6 45.5 At5g25090 832580 plastocyanin-like domain-containing protein F:electron carrier activity, copper ion binding;P:unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;P O.I. C.G. H.G.
19.3 99.6 49.5 At4g20320 827780 CTP synthase/ catalytic F:CTP synthase activity, catalytic activity;P:pyrimidine ribonucleotide metabolic process, pyrimidine nucleotide biosynthetic process;C:cellular_component unknown;OBMFAP O.I. C.G. H.G.
19.2 99.6 15.8 At3g57920 824961 SPL15 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 15) Encodes a putative transcriptional regulator that is involved in the vegetative to reproductive phase transition. Expression is regulated by MIR156b. O.I. C.G. H.G.
18.9 99.5 62.3 At4g15830 827264 binding F:binding;P:biological_process unknown;C:cellular_component unknown;MPOF O.I. C.G. H.G.
18.9 99.5 13.9 At1g19830 838570 auxin-responsive protein, putative F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PO O.I. C.G. H.G.
18.5 99.5 115.7 At5g16250 831485 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
18.3 99.5 215.1 At5g51750 835249 ATSBT1.3 (ARABIDOPSIS THALIANA SUBTILASE 1.3) F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast;BPFOAM O.I. C.G. H.G.
18.3 99.5 28.0 At4g02800 828171 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMFBPVA O.I. C.G. H.G.
18.0 99.5 58.1 At1g53070 841741 legume lectin family protein F:carbohydrate binding, sugar binding;P:biological_process unknown;C:cell wall, plant-type cell wall;PBO O.I. C.G. H.G.
17.9 99.5 190.5 At5g48485 834904 DIR1 (DEFECTIVE IN INDUCED RESISTANCE 1) encodes a putative apoplastic lipid transfer protein that is involved in systemic acquired resistance. Mutants in this gene exhibit wild-type local resistance to avirulent and virulent Pseudomonas syringae, but pathogenesis-related gene expression is abolished in uninoculated distant leaves and fail to develop SAR to virulent Pseudomonas or Peronospora parasitica. O.I. C.G. H.G.
17.8 99.5 102.8 At5g22880 832352 HTB2 Encodes a histone 2B (H2B) protein. This protein can be ubiquitinated in planta, and this modification depends on the HUB1 and HUB2 E3 ubiquitin ligases. O.I. C.G. H.G.
17.8 99.5 23.7 At4g32710 3770575 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVA O.I. C.G. H.G.
17.6 99.5 131.5 At1g13710 837932 CYP78A5 member of CYP78A O.I. C.G. H.G.
17.6 99.5 84.1 At1g02730 839467 ATCSLD5 Encodes a gene similar to cellulose synthase. Knock-out mutant has reduced growth, reduced xylan level and reduced xylan synthase activity in stems. O.I. C.G. H.G.
17.4 99.5 95.6 At4g33260 829462 CDC20.2 putative cdc20 protein (CDC20.2) O.I. C.G. H.G.
17.2 99.5 272.5 At3g04290 819584 LTL1 (LI-TOLERANT LIPASE 1) F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM O.I. C.G. H.G.
17.0 99.5 77.2 At4g37750 829931 ANT (AINTEGUMENTA) ANT is required for control of cell proliferation and encodes a putative transcriptional regulator similar to AP2. Loss of function alleles have reduced fertility, abnormal ovules and abnormal lateral organs. Expressed specifically in the chalaza and in floral organ primordia. O.I. C.G. H.G.
17.0 99.5 26.6 At5g59000 836017 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOFPVBA O.I. C.G. H.G.
16.9 99.5 109.4 At1g70710 843408 ATGH9B1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B1) endo-1,4-beta-glucanase. Involved in cell elongation. O.I. C.G. H.G.
16.8 99.5 327.1 At2g28790 817428 osmotin-like protein, putative F:molecular_function unknown;P:response to other organism;C:plant-type cell wall;PFMBO O.I. C.G. H.G.
16.8 99.5 34.8 At1g18370 838418 HIK (HINKEL) Mutant has cytokinesis defects; seedling lethal O.I. C.G. H.G.
16.7 99.5 227.8 At5g48480 834903 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPO O.I. C.G. H.G.
16.6 99.5 9.3 At1g01130 839359 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
16.5 99.5 296.8 At2g20870 816620 cell wall protein precursor, putative F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPMF O.I. C.G. H.G.
16.4 99.5 145.4 At2g26330 817173 ER (ERECTA) Homologous to receptor protein kinases. Involved in specification of organs originating from the shoot apical meristem. Contains a cytoplasmic protein kinase catalytic domain, a transmembrane region, and an extracellular leucine-rich repeat. ER has been identified as a quantitative trait locus for transpiration efficiency by influencing epidermal and mesophyll development, stomatal density and porosity of leaves. It has been implicated in resistance to the bacterium Ralstonia solanacearum and to the necrotrophic fungus Plectosphaerella cucumerina. Together with ERL1 and ERL2, ER governs the initial decision of protodermal cells to either divide proliferatively to produce pavement cells or divide asymmetrically to generate stomatal complexes. O.I. C.G. H.G.
16.4 99.5 68.9 At4g36180 829775 leucine-rich repeat family protein F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. C.G. H.G.
16.4 99.5 44.6 At5g11160 830985 APT5 (Adenine phosphoribosyltransferase 5) F:adenine phosphoribosyltransferase activity;P:nucleoside metabolic process, adenine salvage, anaerobic respiration, nucleotide metabolic process;C:cellular_component unknown;BOAMFP O.I. C.G. H.G.
16.3 99.5 89.8 At1g44760 841040 universal stress protein (USP) family protein F:molecular_function unknown;P:response to stress;C:unknown;PMO O.I. C.G. H.G.
16.3 99.5 20.6 At1g60060 842300 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPFMB O.I. C.G. H.G.
16.0 99.5 81.4 At5g28640 832968 AN3 (ANGUSTIFOLIA 3) Encodes a protein with similarity to mammalian transcriptional coactivator that is involved in cell proliferation during leaf and flower development. Loss of function mutations have narrow, pointed leaves and narrow floral organs. AN3 interacts with members of the growth regulating factor (GRF) family of transcription factors. O.I. C.G. H.G.
16.0 99.5 13.1 At4g21270 827876 ATK1 (ARABIDOPSIS THALIANA KINESIN 1) Encodes a kinesin-like motor protein heavy chain. Loss of function mutations have reduced fertility and are defective in spindle formation in male meiosis. O.I. C.G. H.G.
15.9 99.5 33.0 At2g25270 817065 unknown protein F:unknown;P:unknown;C:plasma membrane;POBM O.I. C.G. H.G.
15.8 99.5 128.4 At4g02290 828080 AtGH9B13 (Arabidopsis thaliana glycosyl hydrolase 9B13) F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOF O.I. C.G. H.G.
15.8 99.5 119.7 At5g47500 834800 pectinesterase family protein F:pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFM O.I. C.G. H.G.
15.8 99.5 58.1 At5g51560 835230 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
15.7 99.5 43.9 At2g32765 817837 SUMO5 (SMALL UBIQUITINRELATED MODIFIER 5) Encodes a small ubiquitin-like modifier (SUMO) protein that becomes covalently attached to various intracellular protein targets through an isopeptide bond. SUMOylation typically has a post-translational effect on the behavior of the target protein. O.I. C.G. H.G.
15.6 99.5 61.8 At1g57820 842157 VIM1 (VARIANT IN METHYLATION 1) Encodes a 645-amino acid methylcytosine-binding protein with a PHD domain, two RING finger domains, and an SRA domain that is involved in centromere heterochromatinization. This protein functions as an E3 ubiquitin ligase in vitro. The protein has been shown to bind to methylated cytosines of CG, CNG and CNN motifs via its SRA domain but has a preference for the former. It plays a role in the establishment/maintenance of chromatin structure during cell division and is localized in the nucleus. Plants over-expressing VIM1/ORTH2 show an inhibition in root growth and a delay in flowering. Both over-expression of GFP:ORTH2 and loss of ORTH2/VIM1 lead to decreased levels of DNA methylation. GFP:ORTH2 over-expressers also have increased levels of FWA transcripts. O.I. C.G. H.G.
15.4 99.5 356.1 At4g03210 828024 XTH9 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 9) encodes a member of xyloglucan endotransglucosylase/hydrolases (XTHs) that catalyze the cleavage and molecular grafting of xyloglucan chains function in loosening and rearrangement of the cell wall. Gene is expressed in shoot apex region, flower buds, flower stalks and internodes bearing flowers. O.I. C.G. H.G.
15.4 99.5 153.0 At4g31840 829313 plastocyanin-like domain-containing protein F:electron carrier activity, copper ion binding;P:unknown;C:plasma membrane, anchored to membrane;P O.I. C.G. H.G.
15.4 99.5 128.1 At3g02110 821207 scpl25 (serine carboxypeptidase-like 25) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PFMOB O.I. C.G. H.G.
15.4 99.5 93.6 At4g23800 828480 high mobility group (HMG1/2) family protein F:transcription factor activity;P:unknown;C:nucleus, chloroplast;MOBFPAV O.I. C.G. H.G.
15.0 99.4 33.7 At3g61250 825297 AtMYB17 (myb domain protein 17) Member of the R2R3 factor gene family. O.I. C.G. H.G.
15.0 99.4 22.1 At5g11510 831023 MYB3R-4 (myb domain protein 3R-4) Arabidopsis thaliana putative c-myb-like transcription factor MYB3R-4 O.I. C.G. H.G.
14.9 99.4 171.1 At1g18250 838405 ATLP-1 encodes a thaumatin-like protein O.I. C.G. H.G.
14.9 99.4 120.4 At4g15210 827185 BAM5 (BETA-AMYLASE 5) cytosolic beta-amylase expressed in rosette leaves and inducible by sugar. RAM1 mutants have reduced beta amylase in leaves and stems. O.I. C.G. H.G.
14.9 99.4 97.7 At3g02640 821289 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PO O.I. C.G. H.G.
14.7 99.4 49.9 At3g14190 820636 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
14.7 99.4 26.6 At5g56220 835721 nucleoside-triphosphatase/ nucleotide binding F:nucleoside-triphosphatase activity, nucleotide binding;P:unknown;C:chloroplast;OPMBFVA O.I. C.G. H.G.
14.7 99.4 20.3 At1g76310 843964 CYCB2 core cell cycle genes O.I. C.G. H.G.
14.7 99.4 18.6 At4g27240 828832 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;PFO O.I. C.G. H.G.
14.7 99.4 12.7 At1g31310 840019 hydroxyproline-rich glycoprotein family protein F:transcription factor activity;P:regulation of transcription;C:unknown;MPOBFVA O.I. C.G. H.G.
14.6 99.4 8.4 At3g13662 820571 - F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P O.I. C.G. H.G.
14.4 99.4 117.3 At3g53190 824485 pectate lyase family protein F:lyase activity, pectate lyase activity;P:biological_process unknown;C:anchored to membrane;BPFO O.I. C.G. H.G.
14.3 99.4 210.2 At3g20670 821614 HTA13 Encodes HTA13, a histone H2A protein. O.I. C.G. H.G.
14.3 99.4 83.8 At3g54340 824601 AP3 (APETALA 3) Floral homeotic gene encoding a MADS domain protein homologous to SRF transcription factors. Specifies petal and stamen identities. Associates with PISTILLATA. O.I. C.G. H.G.
14.3 99.4 60.9 At1g58430 842212 RXF26 Encodes an anther-specific proline-rich protein. O.I. C.G. H.G.
14.3 99.4 24.4 At1g03780 839140 targeting protein-related Homolog of vertebrate TPX2. Protein has three domains involved in nuclear targeting, one in nuclear export and two in microtubule binding. Involved in mitotic spindle assembly during late prophase and early prometaphase. O.I. C.G. H.G.
14.2 99.4 143.8 At2g07783 3768188 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
56.5	99.8	121.1	At1g69120	843244	AP1 (APETALA1)	Floral homeotic gene encoding a MADS domain protein homologous to SRF transcription factors. Specifies floral meristem and sepal identity. Required for the transcriptional activation of AGAMOUS. Interacts with LEAFY.Binds to promoter and regulates the expression of flowering time genes SVP, SOC1 and AGL24.	O.I.	C.G.	H.G.
46.3	99.8	103.2	At5g20740	832197	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
40.6	99.8	87.6	At1g53160	841749	SPL4 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 4)	Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR.	O.I.	C.G.	H.G.
40.2	99.8	55.3	At3g06220	819796	DNA binding / transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P	O.I.	C.G.	H.G.
34.9	99.7	68.1	At2g42200	818820	SPL9 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 9)	Encodes a putative transcriptional regulator that is involved in the vegetative to reproductive phase transition. Expresssion is regulated by MIR156b.	O.I.	C.G.	H.G.
33.3	99.7	25.8	At5g03390	831852	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
32.6	99.7	29.6	At1g75090	843846	methyladenine glycosylase family protein	F:DNA-3-methyladenine glycosylase I activity, catalytic activity;P:DNA repair, base-excision repair;C:unknown;BOPAMF	O.I.	C.G.	H.G.
31.2	99.7	18.6	At3g06160	819790	transcriptional factor B3 family protein	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;PO	O.I.	C.G.	H.G.
31.1	99.7	48.2	At2g42800	818880	AtRLP29 (Receptor Like Protein 29)	F:protein binding;P:unknown;C:anchored to membrane, plant-type cell wall;PMOBFA	O.I.	C.G.	H.G.
30.9	99.7	404.5	At4g29030	829024	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVA	O.I.	C.G.	H.G.
29.5	99.7	30.3	At3g11000	820271	-	F:unknown;P:unknown;C:endomembrane system;POBFMV	O.I.	C.G.	H.G.
29.5	99.7	24.4	At4g30130	829136	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PMF	O.I.	C.G.	H.G.
29.1	99.7	62.1	At4g34400	829590	DNA binding / transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:endomembrane system;MOBFPVA	O.I.	C.G.	H.G.
28.5	99.7	19.0	At4g00870	827990	basic helix-loop-helix (bHLH) family protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFO	O.I.	C.G.	H.G.
28.0	99.7	57.6	At1g02800	839385	ATCEL2	Encodes a protein with similarity to endo-1,4-b-glucanases and is a member of Glycoside Hydrolase Family 9. CEL2 is induced by nemotodes and is expressed in syncitia induced by Heterodera schachtii.May be involved in the development and function of syncitia.	O.I.	C.G.	H.G.
27.9	99.7	62.6	At1g24070	839019	ATCSLA10	encodes a gene similar to cellulose synthase	O.I.	C.G.	H.G.
27.7	99.7	46.4	At5g50740	835146	metal ion binding	F:metal ion binding;P:metal ion transport;C:cellular_component unknown;POMBFV	O.I.	C.G.	H.G.
27.3	99.7	42.4	At2g34650	818030	PID (PINOID)	Encodes a protein serine/threonine kinase that may act as a positive regulator of cellular auxin efflux, as a a binary switch for PIN polarity, and as a negative regulator of auxin signaling. Recessive mutants exhibit similar phenotypes as pin-formed mutants in flowers and inflorescence but distinct phenotypes in cotyledons and leaves. Expressed in the vascular tissue proximal to root and shoot meristems, shoot apex, and embryos. Expression is induced by auxin. Overexpression of the gene results in phenotypes in the root and shoot similar to those found in auxin-insensitive mutants. The protein physically interacts with TCH3 (TOUCH3) and PID-BINDING PROTEIN 1 (PBP1), a previously uncharacterized protein containing putative EF-hand calcium-binding motifs. Acts together with ENP (ENHANCER OF PINOID) to instruct precursor cells to elaborate cotyledons in the transition stage embryo. Interacts with PDK1. PID autophosphorylation is required for the ability of PID to phosphorylate an exogenous substrate. PID activation loop is required for PDK1-dependent PID phosphorylation and requires the PIF domain. Negative regulator of root hair growth. PID kinase activity is critical for the inhibition of root hair growth and for maintaining the proper subcellular localization of PID.	O.I.	C.G.	H.G.
26.9	99.7	37.4	At1g27370	839626	squamosa promoter-binding protein-like 10 (SPL10)	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PM	O.I.	C.G.	H.G.
26.6	99.7	94.0	At5g44620	834490	CYP706A3	member of CYP706A	O.I.	C.G.	H.G.
26.1	99.7	65.1	At4g29700	829091	type I phosphodiesterase/nucleotide pyrophosphatase family protein	F:hydrolase activity, catalytic activity;P:metabolic process, nucleotide metabolic process;C:vacuole;MBOFPAV	O.I.	C.G.	H.G.
25.9	99.7	203.0	At5g08000	830694	E13L3 (GLUCAN ENDO-1,3-BETA-GLUCOSIDASE-LIKE PROTEIN 3)	Encodes a member of the X8-GPI family of proteins. It localizes to the plasmodesmata and binds callose.	O.I.	C.G.	H.G.
25.6	99.7	40.3	At3g13960	820609	AtGRF5 (GROWTH-REGULATING FACTOR 5)	Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in root, shoot and flower.	O.I.	C.G.	H.G.
25.3	99.6	29.1	At1g67040	843024	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMF	O.I.	C.G.	H.G.
25.2	99.6	286.1	At1g52030	841632	MBP2 (MYROSINASE-BINDING PROTEIN 2)	Similar to myrosinase binding proteins which may be involved in metabolizing glucosinolates and forming defense compounds to protect against herbivory. Also similar to lectins and other agglutinating factors. Expressed only in flowers.	O.I.	C.G.	H.G.
25.0	99.6	43.0	At5g43020	834317	leucine-rich repeat transmembrane protein kinase, putative	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
23.6	99.6	251.1	At3g28500	822480	60S acidic ribosomal protein P2 (RPP2C)	F:structural constituent of ribosome;P:translational elongation;C:cytosol, cytosolic ribosome, ribosome, plasma membrane;MFOPAB	O.I.	C.G.	H.G.
23.4	99.6	252.6	At1g62500	842547	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;MBPOFVA	O.I.	C.G.	H.G.
23.0	99.6	34.5	At2g34190	817980	xanthine/uracil permease family protein	F:transmembrane transporter activity;P:transport;C:membrane;BOMPFAV	O.I.	C.G.	H.G.
22.4	99.6	55.4	At5g48360	834889	formin homology 2 domain-containing protein / FH2 domain-containing protein	F:actin binding;P:cellular component organization, actin cytoskeleton organization;C:unknown;MPOFVBA	O.I.	C.G.	H.G.
21.8	99.6	84.9	At1g75240	843861	AtHB33 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 33)	F:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;PMOFBV	O.I.	C.G.	H.G.
21.3	99.6	115.6	At2g33810	817948	SPL3 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 3)	Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It binds DNA, may directly regulate AP1, and is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR.	O.I.	C.G.	H.G.
20.9	99.6	64.0	At1g30330	839913	ARF6 (AUXIN RESPONSE FACTOR 6)	Encodes a member of the auxin response factor family. Mediates auxin response via expression of auxin regulated genes. Acts redundantly with ARF8 to control stamen elongation and flower maturation. Expression of ARF6 is controlled by miR167.	O.I.	C.G.	H.G.
20.8	99.6	100.9	At5g10400	830904	histone H3	F:DNA binding;P:nucleosome assembly;C:nucleus, chloroplast, nucleosome;MFPO	O.I.	C.G.	H.G.
20.6	99.6	20.3	At1g75640	843899	leucine-rich repeat family protein / protein kinase family protein	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;MPOBFVA	O.I.	C.G.	H.G.
20.5	99.6	29.6	At4g15140	827180	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
20.0	99.6	60.1	At3g23890	821972	TOPII (TOPOISOMERASE II)	Encodes a topoisomerase II that is highly expressed in young seedlings. The protein is localized in the nucleus and gene expression levels are increased in proliferative tissues.	O.I.	C.G.	H.G.
19.7	99.6	109.9	At5g62210	836342	embryo-specific protein-related	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;MPOFVBA	O.I.	C.G.	H.G.
19.6	99.6	120.5	At4g38660	830022	thaumatin, putative	F:molecular_function unknown;P:response to other organism;C:anchored to membrane;PFMBOV	O.I.	C.G.	H.G.
19.6	99.6	35.3	At4g29360	829057	glycosyl hydrolase family 17 protein	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to plasma membrane, anchored to membrane;PFOB	O.I.	C.G.	H.G.
19.5	99.6	72.2	At3g50070	824169	CYCD3	Encode CYCD3;3, a CYCD3 D-type cyclin. Important for determining cell number in developing lateral organs. Mediating cytokinin effects in apical growth and development.	O.I.	C.G.	H.G.
19.5	99.6	43.4	At5g44560	834483	VPS2.2	F:unknown;P:vesicle-mediated transport;C:ESCRT III complex;MPFOB	O.I.	C.G.	H.G.
19.4	99.6	45.5	At5g25090	832580	plastocyanin-like domain-containing protein	F:electron carrier activity, copper ion binding;P:unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;P	O.I.	C.G.	H.G.
19.3	99.6	49.5	At4g20320	827780	CTP synthase/ catalytic	F:CTP synthase activity, catalytic activity;P:pyrimidine ribonucleotide metabolic process, pyrimidine nucleotide biosynthetic process;C:cellular_component unknown;OBMFAP	O.I.	C.G.	H.G.
19.2	99.6	15.8	At3g57920	824961	SPL15 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 15)	Encodes a putative transcriptional regulator that is involved in the vegetative to reproductive phase transition. Expression is regulated by MIR156b.	O.I.	C.G.	H.G.
18.9	99.5	62.3	At4g15830	827264	binding	F:binding;P:biological_process unknown;C:cellular_component unknown;MPOF	O.I.	C.G.	H.G.
18.9	99.5	13.9	At1g19830	838570	auxin-responsive protein, putative	F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
18.5	99.5	115.7	At5g16250	831485	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
18.3	99.5	215.1	At5g51750	835249	ATSBT1.3 (ARABIDOPSIS THALIANA SUBTILASE 1.3)	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast;BPFOAM	O.I.	C.G.	H.G.
18.3	99.5	28.0	At4g02800	828171	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMFBPVA	O.I.	C.G.	H.G.
18.0	99.5	58.1	At1g53070	841741	legume lectin family protein	F:carbohydrate binding, sugar binding;P:biological_process unknown;C:cell wall, plant-type cell wall;PBO	O.I.	C.G.	H.G.
17.9	99.5	190.5	At5g48485	834904	DIR1 (DEFECTIVE IN INDUCED RESISTANCE 1)	encodes a putative apoplastic lipid transfer protein that is involved in systemic acquired resistance. Mutants in this gene exhibit wild-type local resistance to avirulent and virulent Pseudomonas syringae, but pathogenesis-related gene expression is abolished in uninoculated distant leaves and fail to develop SAR to virulent Pseudomonas or Peronospora parasitica.	O.I.	C.G.	H.G.
17.8	99.5	102.8	At5g22880	832352	HTB2	Encodes a histone 2B (H2B) protein. This protein can be ubiquitinated in planta, and this modification depends on the HUB1 and HUB2 E3 ubiquitin ligases.	O.I.	C.G.	H.G.
17.8	99.5	23.7	At4g32710	3770575	ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVA	O.I.	C.G.	H.G.
17.6	99.5	131.5	At1g13710	837932	CYP78A5	member of CYP78A	O.I.	C.G.	H.G.
17.6	99.5	84.1	At1g02730	839467	ATCSLD5	Encodes a gene similar to cellulose synthase. Knock-out mutant has reduced growth, reduced xylan level and reduced xylan synthase activity in stems.	O.I.	C.G.	H.G.
17.4	99.5	95.6	At4g33260	829462	CDC20.2	putative cdc20 protein (CDC20.2)	O.I.	C.G.	H.G.
17.2	99.5	272.5	At3g04290	819584	LTL1 (LI-TOLERANT LIPASE 1)	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM	O.I.	C.G.	H.G.
17.0	99.5	77.2	At4g37750	829931	ANT (AINTEGUMENTA)	ANT is required for control of cell proliferation and encodes a putative transcriptional regulator similar to AP2. Loss of function alleles have reduced fertility, abnormal ovules and abnormal lateral organs. Expressed specifically in the chalaza and in floral organ primordia.	O.I.	C.G.	H.G.
17.0	99.5	26.6	At5g59000	836017	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOFPVBA	O.I.	C.G.	H.G.
16.9	99.5	109.4	At1g70710	843408	ATGH9B1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B1)	endo-1,4-beta-glucanase. Involved in cell elongation.	O.I.	C.G.	H.G.
16.8	99.5	327.1	At2g28790	817428	osmotin-like protein, putative	F:molecular_function unknown;P:response to other organism;C:plant-type cell wall;PFMBO	O.I.	C.G.	H.G.
16.8	99.5	34.8	At1g18370	838418	HIK (HINKEL)	Mutant has cytokinesis defects; seedling lethal	O.I.	C.G.	H.G.
16.7	99.5	227.8	At5g48480	834903	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPO	O.I.	C.G.	H.G.
16.6	99.5	9.3	At1g01130	839359	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
16.5	99.5	296.8	At2g20870	816620	cell wall protein precursor, putative	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPMF	O.I.	C.G.	H.G.
16.4	99.5	145.4	At2g26330	817173	ER (ERECTA)	Homologous to receptor protein kinases. Involved in specification of organs originating from the shoot apical meristem. Contains a cytoplasmic protein kinase catalytic domain, a transmembrane region, and an extracellular leucine-rich repeat. ER has been identified as a quantitative trait locus for transpiration efficiency by influencing epidermal and mesophyll development, stomatal density and porosity of leaves. It has been implicated in resistance to the bacterium Ralstonia solanacearum and to the necrotrophic fungus Plectosphaerella cucumerina. Together with ERL1 and ERL2, ER governs the initial decision of protodermal cells to either divide proliferatively to produce pavement cells or divide asymmetrically to generate stomatal complexes.	O.I.	C.G.	H.G.
16.4	99.5	68.9	At4g36180	829775	leucine-rich repeat family protein	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;MPOBFVA	O.I.	C.G.	H.G.
16.4	99.5	44.6	At5g11160	830985	APT5 (Adenine phosphoribosyltransferase 5)	F:adenine phosphoribosyltransferase activity;P:nucleoside metabolic process, adenine salvage, anaerobic respiration, nucleotide metabolic process;C:cellular_component unknown;BOAMFP	O.I.	C.G.	H.G.
16.3	99.5	89.8	At1g44760	841040	universal stress protein (USP) family protein	F:molecular_function unknown;P:response to stress;C:unknown;PMO	O.I.	C.G.	H.G.
16.3	99.5	20.6	At1g60060	842300	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPFMB	O.I.	C.G.	H.G.
16.0	99.5	81.4	At5g28640	832968	AN3 (ANGUSTIFOLIA 3)	Encodes a protein with similarity to mammalian transcriptional coactivator that is involved in cell proliferation during leaf and flower development. Loss of function mutations have narrow, pointed leaves and narrow floral organs. AN3 interacts with members of the growth regulating factor (GRF) family of transcription factors.	O.I.	C.G.	H.G.
16.0	99.5	13.1	At4g21270	827876	ATK1 (ARABIDOPSIS THALIANA KINESIN 1)	Encodes a kinesin-like motor protein heavy chain. Loss of function mutations have reduced fertility and are defective in spindle formation in male meiosis.	O.I.	C.G.	H.G.
15.9	99.5	33.0	At2g25270	817065	unknown protein	F:unknown;P:unknown;C:plasma membrane;POBM	O.I.	C.G.	H.G.
15.8	99.5	128.4	At4g02290	828080	AtGH9B13 (Arabidopsis thaliana glycosyl hydrolase 9B13)	F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOF	O.I.	C.G.	H.G.
15.8	99.5	119.7	At5g47500	834800	pectinesterase family protein	F:pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFM	O.I.	C.G.	H.G.
15.8	99.5	58.1	At5g51560	835230	leucine-rich repeat transmembrane protein kinase, putative	F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
15.7	99.5	43.9	At2g32765	817837	SUMO5 (SMALL UBIQUITINRELATED MODIFIER 5)	Encodes a small ubiquitin-like modifier (SUMO) protein that becomes covalently attached to various intracellular protein targets through an isopeptide bond. SUMOylation typically has a post-translational effect on the behavior of the target protein.	O.I.	C.G.	H.G.
15.6	99.5	61.8	At1g57820	842157	VIM1 (VARIANT IN METHYLATION 1)	Encodes a 645-amino acid methylcytosine-binding protein with a PHD domain, two RING finger domains, and an SRA domain that is involved in centromere heterochromatinization. This protein functions as an E3 ubiquitin ligase in vitro. The protein has been shown to bind to methylated cytosines of CG, CNG and CNN motifs via its SRA domain but has a preference for the former. It plays a role in the establishment/maintenance of chromatin structure during cell division and is localized in the nucleus. Plants over-expressing VIM1/ORTH2 show an inhibition in root growth and a delay in flowering. Both over-expression of GFP:ORTH2 and loss of ORTH2/VIM1 lead to decreased levels of DNA methylation. GFP:ORTH2 over-expressers also have increased levels of FWA transcripts.	O.I.	C.G.	H.G.
15.4	99.5	356.1	At4g03210	828024	XTH9 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 9)	encodes a member of xyloglucan endotransglucosylase/hydrolases (XTHs) that catalyze the cleavage and molecular grafting of xyloglucan chains function in loosening and rearrangement of the cell wall. Gene is expressed in shoot apex region, flower buds, flower stalks and internodes bearing flowers.	O.I.	C.G.	H.G.
15.4	99.5	153.0	At4g31840	829313	plastocyanin-like domain-containing protein	F:electron carrier activity, copper ion binding;P:unknown;C:plasma membrane, anchored to membrane;P	O.I.	C.G.	H.G.
15.4	99.5	128.1	At3g02110	821207	scpl25 (serine carboxypeptidase-like 25)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PFMOB	O.I.	C.G.	H.G.
15.4	99.5	93.6	At4g23800	828480	high mobility group (HMG1/2) family protein	F:transcription factor activity;P:unknown;C:nucleus, chloroplast;MOBFPAV	O.I.	C.G.	H.G.
15.0	99.4	33.7	At3g61250	825297	AtMYB17 (myb domain protein 17)	Member of the R2R3 factor gene family.	O.I.	C.G.	H.G.
15.0	99.4	22.1	At5g11510	831023	MYB3R-4 (myb domain protein 3R-4)	Arabidopsis thaliana putative c-myb-like transcription factor MYB3R-4	O.I.	C.G.	H.G.
14.9	99.4	171.1	At1g18250	838405	ATLP-1	encodes a thaumatin-like protein	O.I.	C.G.	H.G.
14.9	99.4	120.4	At4g15210	827185	BAM5 (BETA-AMYLASE 5)	cytosolic beta-amylase expressed in rosette leaves and inducible by sugar. RAM1 mutants have reduced beta amylase in leaves and stems.	O.I.	C.G.	H.G.
14.9	99.4	97.7	At3g02640	821289	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PO	O.I.	C.G.	H.G.
14.7	99.4	49.9	At3g14190	820636	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
14.7	99.4	26.6	At5g56220	835721	nucleoside-triphosphatase/ nucleotide binding	F:nucleoside-triphosphatase activity, nucleotide binding;P:unknown;C:chloroplast;OPMBFVA	O.I.	C.G.	H.G.
14.7	99.4	20.3	At1g76310	843964	CYCB2	core cell cycle genes	O.I.	C.G.	H.G.
14.7	99.4	18.6	At4g27240	828832	zinc finger (C2H2 type) family protein	F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;PFO	O.I.	C.G.	H.G.
14.7	99.4	12.7	At1g31310	840019	hydroxyproline-rich glycoprotein family protein	F:transcription factor activity;P:regulation of transcription;C:unknown;MPOBFVA	O.I.	C.G.	H.G.
14.6	99.4	8.4	At3g13662	820571	-	F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P	O.I.	C.G.	H.G.
14.4	99.4	117.3	At3g53190	824485	pectate lyase family protein	F:lyase activity, pectate lyase activity;P:biological_process unknown;C:anchored to membrane;BPFO	O.I.	C.G.	H.G.
14.3	99.4	210.2	At3g20670	821614	HTA13	Encodes HTA13, a histone H2A protein.	O.I.	C.G.	H.G.
14.3	99.4	83.8	At3g54340	824601	AP3 (APETALA 3)	Floral homeotic gene encoding a MADS domain protein homologous to SRF transcription factors. Specifies petal and stamen identities. Associates with PISTILLATA.	O.I.	C.G.	H.G.
14.3	99.4	60.9	At1g58430	842212	RXF26	Encodes an anther-specific proline-rich protein.	O.I.	C.G.	H.G.
14.3	99.4	24.4	At1g03780	839140	targeting protein-related	Homolog of vertebrate TPX2. Protein has three domains involved in nuclear targeting, one in nuclear export and two in microtubule binding. Involved in mitotic spindle assembly during late prophase and early prometaphase.	O.I.	C.G.	H.G.
14.2	99.4	143.8	At2g07783	3768188	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.

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GSM ID	GSM131679
Assay name	ATGE_51_A
GSE experiment	GSE5633: AtGenExpress: Developmental series (shoots and stems)

Microarray experiments to specifically-expressed genes

GSM ID GSM131679 Assay name ATGE_51_A GSE experiment GSE5633: AtGenExpress: Developmental series (shoots and stems)

GSM ID GSM131679

Assay name ATGE_51_A

GSE experiment GSE5633: AtGenExpress: Developmental series (shoots and stems)