CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM131673

Assay name ATGE_49_A

GSE experiment GSE5633: AtGenExpress: Developmental series (shoots and stems)

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
195.1 100.0 141.9 At5g47600 834810 heat shock protein-related F:molecular_function unknown;P:biological_process unknown;C:unknown;PB O.I. C.G. H.G.
174.7 100.0 107.5 At1g69180 843249 CRC (CRABS CLAW) Putative transcription factor with zinc finger and helix-loop-helix domains, the later similar to HMG boxes. Involved in specifying abaxial cell fate in the carpel. Four putative LFY binding sites (CCANTG) and two potential binding sites for MADS box proteins known as CArG boxes (CC(A/T)6GG) were found in the region spanning 3.8 Kb upstream of the CRC coding region. O.I. C.G. H.G.
111.1 99.9 114.6 At1g02800 839385 ATCEL2 Encodes a protein with similarity to endo-1,4-b-glucanases and is a member of Glycoside Hydrolase Family 9. CEL2 is induced by nemotodes and is expressed in syncitia induced by Heterodera schachtii.May be involved in the development and function of syncitia. O.I. C.G. H.G.
110.3 99.9 30.5 At3g17010 820957 transcriptional factor B3 family protein transcriptional factor B3 family protein, contains Pfam profile PF02362: B3 DNA binding domain. Activated by AGAMOUS ina a cal-1, ap1-1 background. Expressed in stamen primordia, the placental region of developing carpels and the ovary. O.I. C.G. H.G.
100.2 99.9 62.0 At3g53310 824499 transcriptional factor B3 family protein F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:endomembrane system;MBOFPV O.I. C.G. H.G.
99.7 99.9 41.3 At2g16210 816118 transcriptional factor B3 family protein F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P O.I. C.G. H.G.
79.6 99.9 49.8 At3g11000 820271 - F:unknown;P:unknown;C:endomembrane system;POBFMV O.I. C.G. H.G.
56.8 99.8 65.7 At3g06220 819796 DNA binding / transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P O.I. C.G. H.G.
54.6 99.8 85.0 At4g34400 829590 DNA binding / transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:endomembrane system;MOBFPVA O.I. C.G. H.G.
48.2 99.8 32.4 At1g10980 837641 - F:unknown;P:biological_process unknown;C:vacuole;MFPO O.I. C.G. H.G.
41.0 99.8 40.8 At1g03710 839427 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POB O.I. C.G. H.G.
40.8 99.8 29.0 At5g57720 835879 transcriptional factor B3 family protein F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;POFM O.I. C.G. H.G.
38.6 99.8 22.3 At3g57920 824961 SPL15 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 15) Encodes a putative transcriptional regulator that is involved in the vegetative to reproductive phase transition. Expression is regulated by MIR156b. O.I. C.G. H.G.
37.9 99.8 27.9 At2g35310 818098 transcriptional factor B3 family protein F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P O.I. C.G. H.G.
36.7 99.7 49.2 At2g34650 818030 PID (PINOID) Encodes a protein serine/threonine kinase that may act as a positive regulator of cellular auxin efflux, as a a binary switch for PIN polarity, and as a negative regulator of auxin signaling. Recessive mutants exhibit similar phenotypes as pin-formed mutants in flowers and inflorescence but distinct phenotypes in cotyledons and leaves. Expressed in the vascular tissue proximal to root and shoot meristems, shoot apex, and embryos. Expression is induced by auxin. Overexpression of the gene results in phenotypes in the root and shoot similar to those found in auxin-insensitive mutants. The protein physically interacts with TCH3 (TOUCH3) and PID-BINDING PROTEIN 1 (PBP1), a previously uncharacterized protein containing putative EF-hand calcium-binding motifs. Acts together with ENP (ENHANCER OF PINOID) to instruct precursor cells to elaborate cotyledons in the transition stage embryo. Interacts with PDK1. PID autophosphorylation is required for the ability of PID to phosphorylate an exogenous substrate. PID activation loop is required for PDK1-dependent PID phosphorylation and requires the PIF domain. Negative regulator of root hair growth. PID kinase activity is critical for the inhibition of root hair growth and for maintaining the proper subcellular localization of PID. O.I. C.G. H.G.
36.0 99.7 94.2 At2g45190 819127 AFO (ABNORMAL FLORAL ORGANS) Encodes a member of the YABBY family of transcriptional regulators that is involved in abaxial cell type specification in leaves and fruits. YAB1 acts in a non-cell autonomous fashion within the meristem to affect phyllotactic patterning. The non-autonomous effect on the central region of the meristem is mediated through the activity if Lateral Suppressor (LAS). O.I. C.G. H.G.
34.6 99.7 19.4 At1g31310 840019 hydroxyproline-rich glycoprotein family protein F:transcription factor activity;P:regulation of transcription;C:unknown;MPOBFVA O.I. C.G. H.G.
34.0 99.7 424.3 At4g29030 829024 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVA O.I. C.G. H.G.
33.2 99.7 77.3 At3g23890 821972 TOPII (TOPOISOMERASE II) Encodes a topoisomerase II that is highly expressed in young seedlings. The protein is localized in the nucleus and gene expression levels are increased in proliferative tissues. O.I. C.G. H.G.
31.4 99.7 105.0 At4g37750 829931 ANT (AINTEGUMENTA) ANT is required for control of cell proliferation and encodes a putative transcriptional regulator similar to AP2. Loss of function alleles have reduced fertility, abnormal ovules and abnormal lateral organs. Expressed specifically in the chalaza and in floral organ primordia. O.I. C.G. H.G.
30.8 99.7 174.1 At1g13710 837932 CYP78A5 member of CYP78A O.I. C.G. H.G.
30.4 99.7 24.6 At5g03390 831852 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
30.2 99.7 133.7 At5g22880 832352 HTB2 Encodes a histone 2B (H2B) protein. This protein can be ubiquitinated in planta, and this modification depends on the HUB1 and HUB2 E3 ubiquitin ligases. O.I. C.G. H.G.
29.7 99.7 126.9 At3g61310 825303 DNA-binding family protein F:DNA binding;P:biological_process unknown;C:cellular_component unknown;PMFOB O.I. C.G. H.G.
29.5 99.7 302.9 At5g48480 834903 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPO O.I. C.G. H.G.
29.1 99.7 46.7 At2g42800 818880 AtRLP29 (Receptor Like Protein 29) F:protein binding;P:unknown;C:anchored to membrane, plant-type cell wall;PMOBFA O.I. C.G. H.G.
29.0 99.7 27.9 At1g75090 843846 methyladenine glycosylase family protein F:DNA-3-methyladenine glycosylase I activity, catalytic activity;P:DNA repair, base-excision repair;C:unknown;BOPAMF O.I. C.G. H.G.
29.0 99.7 24.3 At1g63480 842654 DNA-binding family protein F:DNA binding;P:biological_process unknown;C:unknown;PMFOBV O.I. C.G. H.G.
28.9 99.7 56.9 At1g73590 843693 PIN1 (PIN-FORMED 1) Encodes an auxin efflux carrier involved in shoot and root development. It is involved in the maintenance of embryonic auxin gradients. Loss of function severely affects organ initiation, pin1 mutants are characterised by an inflorescence meristem that does not initiate any flowers, resulting in the formation of a naked inflorescence stem. PIN1 is involved in the determination of leaf shape by actively promoting development of leaf margin serrations. In roots, the protein mainly resides at the basal end of the vascular cells, but weak signals can be detected in the epidermis and the cortex. Expression levels and polarity of this auxin efflux carrier change during primordium development suggesting that cycles of auxin build-up and depletion accompany, and may direct, different stages of primordium development. PIN1 action on plant development does not strictly require function of PGP1 and PGP19 proteins. O.I. C.G. H.G.
28.9 99.7 17.9 At3g06160 819790 transcriptional factor B3 family protein F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;PO O.I. C.G. H.G.
28.5 99.7 97.2 At5g44620 834490 CYP706A3 member of CYP706A O.I. C.G. H.G.
27.5 99.7 59.1 At2g21050 816640 amino acid permease, putative F:amino acid transmembrane transporter activity, transporter activity;P:amino acid transport, response to nematode;C:membrane;PFMO O.I. C.G. H.G.
27.3 99.7 102.2 At2g21060 816641 ATGRP2B (GLYCINE-RICH PROTEIN 2B) glycine-rich protein (AtGRP2b) O.I. C.G. H.G.
26.8 99.7 15.7 At4g31610 829288 REM1 (REPRODUCTIVE MERISTEM 1) Expressed specifically in reproductive meristems, member of a moderately sized gene family distantly related to known plant DNA binding proteins O.I. C.G. H.G.
26.6 99.7 13.6 At5g09780 830838 transcriptional factor B3 family protein F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P O.I. C.G. H.G.
26.1 99.7 22.9 At1g75640 843899 leucine-rich repeat family protein / protein kinase family protein F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. C.G. H.G.
25.5 99.7 72.3 At4g15830 827264 binding F:binding;P:biological_process unknown;C:cellular_component unknown;MPOF O.I. C.G. H.G.
25.2 99.6 136.9 At4g38660 830022 thaumatin, putative F:molecular_function unknown;P:response to other organism;C:anchored to membrane;PFMBOV O.I. C.G. H.G.
25.0 99.6 80.6 At1g69120 843244 AP1 (APETALA1) Floral homeotic gene encoding a MADS domain protein homologous to SRF transcription factors. Specifies floral meristem and sepal identity. Required for the transcriptional activation of AGAMOUS. Interacts with LEAFY.Binds to promoter and regulates the expression of flowering time genes SVP, SOC1 and AGL24. O.I. C.G. H.G.
24.0 99.6 255.9 At1g62500 842547 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;MBPOFVA O.I. C.G. H.G.
24.0 99.6 24.1 At5g66940 836828 Dof-type zinc finger domain-containing protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PO O.I. C.G. H.G.
23.9 99.6 252.6 At3g28500 822480 60S acidic ribosomal protein P2 (RPP2C) F:structural constituent of ribosome;P:translational elongation;C:cytosol, cytosolic ribosome, ribosome, plasma membrane;MFOPAB O.I. C.G. H.G.
23.9 99.6 15.9 At4g21270 827876 ATK1 (ARABIDOPSIS THALIANA KINESIN 1) Encodes a kinesin-like motor protein heavy chain. Loss of function mutations have reduced fertility and are defective in spindle formation in male meiosis. O.I. C.G. H.G.
23.8 99.6 29.4 At5g01370 831905 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;OMFBPV O.I. C.G. H.G.
23.7 99.6 83.3 At3g13510 820553 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;PFB O.I. C.G. H.G.
23.7 99.6 38.8 At4g29360 829057 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to plasma membrane, anchored to membrane;PFOB O.I. C.G. H.G.
23.5 99.6 41.8 At1g68400 843169 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
23.3 99.6 30.6 At3g01410 821319 RNase H domain-containing protein F:ribonuclease H activity, nuclease activity, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;POBAM O.I. C.G. H.G.
23.1 99.6 39.9 At2g25270 817065 unknown protein F:unknown;P:unknown;C:plasma membrane;POBM O.I. C.G. H.G.
23.0 99.6 25.1 At5g11550 831027 binding F:binding;P:biological_process unknown;C:chloroplast;PMFOBV O.I. C.G. H.G.
22.9 99.6 48.8 At5g60210 836143 - F:unknown;P:unknown;C:plasma membrane;MOBFPAV O.I. C.G. H.G.
22.7 99.6 120.8 At3g02640 821289 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PO O.I. C.G. H.G.
22.4 99.6 15.4 At2g40030 818591 NRPD1B Encodes the unique largest subunit of nuclear DNA-dependent RNA polymerase V; homologous to budding yeast RPB1 and the E. coli RNA polymerase beta prime subunit. Required for normal RNA-directed DNA methylation at non-CG methylation sites and transgene silencing. O.I. C.G. H.G.
22.3 99.6 96.3 At5g28640 832968 AN3 (ANGUSTIFOLIA 3) Encodes a protein with similarity to mammalian transcriptional coactivator that is involved in cell proliferation during leaf and flower development. Loss of function mutations have narrow, pointed leaves and narrow floral organs. AN3 interacts with members of the growth regulating factor (GRF) family of transcription factors. O.I. C.G. H.G.
22.3 99.6 39.6 At5g07280 830619 EMS1 (EXCESS MICROSPOROCYTES1) Basic leucine zipper (bZIP) transcription factor. Nuclear localization. Involved in light-regulated transcriptional activation of G-box-containing promoters. Negatively regulated by Cop1. Although cytokinins do not appear to affect the gene's promoter activity, they appear to stabilize the protein. HY5 plays a role in anthocyanin accumulation in far-red light and blue light, but not in red light or in the dark. Mutant studies showed that the gene product is involved in the positive regulation of the PHYA-mediated inhibition of hypocotyl elongation. Binds to G- and Z-boxes, and other ACEs, but not to E-box. Loss of function mutation shows ABA resistant seedling phenotypes suggesting involvement for HY5 in mediating ABA responses. Binds to the promoter of ABI5 and regulates its expression. ems1 mutants lack the tapetum. Acts as regulator of anther cell differentiation O.I. C.G. H.G.
22.0 99.6 374.4 At2g28790 817428 osmotin-like protein, putative F:molecular_function unknown;P:response to other organism;C:plant-type cell wall;PFMBO O.I. C.G. H.G.
21.9 99.6 27.1 At5g07180 830609 ERL2 (ERECTA-LIKE 2) Encodes a receptor-like kinase that, together with ER and ERL1 governs the initial decision of protodermal cells to either divide proliferatively to produce pavement cells or divide asymmetrically to generate stomatal complexes. It is also important for maintaining stomatal stem cell activity and preventing terminal differentiation of the meristemoid into the guard mother cell. When heterozygous in an er/erl1 null background, plants are female sterile due to cell division defect in the integuments. O.I. C.G. H.G.
21.9 99.6 10.6 At1g01130 839359 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
21.6 99.6 33.5 At1g27370 839626 squamosa promoter-binding protein-like 10 (SPL10) F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PM O.I. C.G. H.G.
21.5 99.6 70.3 At5g20740 832197 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
21.4 99.6 34.8 At3g61490 825322 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA O.I. C.G. H.G.
21.2 99.6 59.9 At3g14190 820636 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
21.1 99.6 12.1 At1g51670 841592 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
21.0 99.6 78.3 At3g17840 821053 RLK902 Encodes a receptor-like kinase found at the cell surface of various tissues. Its function remains unknown. O.I. C.G. H.G.
20.7 99.6 36.3 At3g13960 820609 AtGRF5 (GROWTH-REGULATING FACTOR 5) Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in root, shoot and flower. O.I. C.G. H.G.
20.6 99.6 41.1 At4g31360 829263 selenium binding F:selenium binding;P:cell redox homeostasis;C:unknown;MOPFB O.I. C.G. H.G.
20.5 99.6 8.9 At4g28560 828974 RIC7 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 7) encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Most similar to RIC6 and RIC8 (subfamily group II). Gene is expressed in all tissues examined. O.I. C.G. H.G.
20.4 99.6 103.5 At4g33260 829462 CDC20.2 putative cdc20 protein (CDC20.2) O.I. C.G. H.G.
20.4 99.6 50.2 At2g32765 817837 SUMO5 (SMALL UBIQUITINRELATED MODIFIER 5) Encodes a small ubiquitin-like modifier (SUMO) protein that becomes covalently attached to various intracellular protein targets through an isopeptide bond. SUMOylation typically has a post-translational effect on the behavior of the target protein. O.I. C.G. H.G.
20.3 99.6 29.1 At5g59000 836017 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOFPVBA O.I. C.G. H.G.
20.3 99.6 15.4 At3g58770 825046 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
20.2 99.6 13.0 At1g11730 837717 galactosyltransferase family protein F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:protein amino acid glycosylation;C:membrane;MPO O.I. C.G. H.G.
19.9 99.6 39.9 At1g21090 838705 hydroxyproline-rich glycoprotein family protein F:unknown;P:unknown;C:anchored to membrane;PMFOB O.I. C.G. H.G.
19.5 99.6 61.1 At5g60910 836212 AGL8 (agamous-like 8) MADS box gene negatively regulated by APETALA1 O.I. C.G. H.G.
19.4 99.6 80.1 At1g75240 843861 AtHB33 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 33) F:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;PMOFBV O.I. C.G. H.G.
19.4 99.6 41.7 At5g37010 833671 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:unknown;MOFBPVA O.I. C.G. H.G.
19.1 99.6 51.2 At5g48360 834889 formin homology 2 domain-containing protein / FH2 domain-containing protein F:actin binding;P:cellular component organization, actin cytoskeleton organization;C:unknown;MPOFVBA O.I. C.G. H.G.
19.0 99.5 87.4 At1g02730 839467 ATCSLD5 Encodes a gene similar to cellulose synthase. Knock-out mutant has reduced growth, reduced xylan level and reduced xylan synthase activity in stems. O.I. C.G. H.G.
18.8 99.5 39.7 At2g33860 817956 ETT (ETTIN) ettin (ett) mutations have pleiotropic effects on Arabidopsis flower development, causing increases in perianth organ number, decreases in stamen number and anther formation, and apical-basal patterning defects in the gynoecium. The ETTIN gene encodes a protein with homology to DNA binding proteins which bind to auxin response elements. ETT transcript is expressed throughout stage 1 floral meristems and subsequently resolves to a complex pattern within petal, stamen and carpel primordia. ETT probably functions to impart regional identity in floral meristems that affects perianth organ number spacing, stamen formation, and regional differentiation in stamens and the gynoecium. During stage 5, ETT expression appears in a ring at the top of the floral meristem before morphological appearance of the gynoecium, consistent with the proposal that ETT is involved in prepatterning apical and basal boundaries in the gynoecium primordium. It is a target of the ta-siRNA tasiR-ARF. O.I. C.G. H.G.
18.7 99.5 73.6 At4g36180 829775 leucine-rich repeat family protein F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. C.G. H.G.
18.4 99.5 154.2 At2g26330 817173 ER (ERECTA) Homologous to receptor protein kinases. Involved in specification of organs originating from the shoot apical meristem. Contains a cytoplasmic protein kinase catalytic domain, a transmembrane region, and an extracellular leucine-rich repeat. ER has been identified as a quantitative trait locus for transpiration efficiency by influencing epidermal and mesophyll development, stomatal density and porosity of leaves. It has been implicated in resistance to the bacterium Ralstonia solanacearum and to the necrotrophic fungus Plectosphaerella cucumerina. Together with ERL1 and ERL2, ER governs the initial decision of protodermal cells to either divide proliferatively to produce pavement cells or divide asymmetrically to generate stomatal complexes. O.I. C.G. H.G.
18.4 99.5 153.6 At2g21130 816648 peptidyl-prolyl cis-trans isomerase / cyclophilin (CYP2) / rotamase F:peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:plasma membrane;OBMFPAV O.I. C.G. H.G.
18.3 99.5 163.4 At2g07783 3768188 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
18.3 99.5 30.9 At1g77630 844098 peptidoglycan-binding LysM domain-containing protein F:unknown;P:cell wall macromolecule catabolic process;C:anchored to plasma membrane, plasma membrane, anchored to membrane;PBOMF O.I. C.G. H.G.
18.2 99.5 69.9 At3g18000 821324 XPL1 (XIPOTL 1) Arabidopsis thaliana N-methyltransferase-like protein mRNA. O.I. C.G. H.G.
18.0 99.5 165.5 At4g31840 829313 plastocyanin-like domain-containing protein F:electron carrier activity, copper ion binding;P:unknown;C:plasma membrane, anchored to membrane;P O.I. C.G. H.G.
17.9 99.5 60.3 At5g65410 836666 HB25 (HOMEOBOX PROTEIN 25) Encodes ZFHD2, a member of the zinc finger homeodomain transcriptional factor family. O.I. C.G. H.G.
17.8 99.5 384.0 At4g03210 828024 XTH9 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 9) encodes a member of xyloglucan endotransglucosylase/hydrolases (XTHs) that catalyze the cleavage and molecular grafting of xyloglucan chains function in loosening and rearrangement of the cell wall. Gene is expressed in shoot apex region, flower buds, flower stalks and internodes bearing flowers. O.I. C.G. H.G.
17.7 99.5 36.6 At3g61250 825297 AtMYB17 (myb domain protein 17) Member of the R2R3 factor gene family. O.I. C.G. H.G.
17.7 99.5 27.5 At4g15140 827180 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
17.6 99.5 90.1 At5g26850 832743 - F:unknown;P:biological_process unknown;C:chloroplast;MPFO O.I. C.G. H.G.
17.6 99.5 27.1 At1g03780 839140 targeting protein-related Homolog of vertebrate TPX2. Protein has three domains involved in nuclear targeting, one in nuclear export and two in microtubule binding. Involved in mitotic spindle assembly during late prophase and early prometaphase. O.I. C.G. H.G.
17.5 99.5 185.1 At1g18250 838405 ATLP-1 encodes a thaumatin-like protein O.I. C.G. H.G.
17.5 99.5 76.9 At1g19850 838573 MP (MONOPTEROS) Encodes a transcription factor (IAA24) mediating embryo axis formation and vascular development. Similar to AUXIN RESPONSIVE FACTOR 1 (ARF1) shown to bind to auxin responsive elements (AREs), and to the maize transcriptional activator VIVIPAROUS 1( VP1). In situ hybridization shows expression in provascular tissue of embryos, the emerging shoot primordia, then is restricted to provascular tissue, and in the root central vascular cylinder. O.I. C.G. H.G.
17.5 99.5 40.0 At5g13840 831230 FZR3 (FIZZY-RELATED 3) F:signal transducer activity;P:signal transduction;C:chloroplast, heterotrimeric G-protein complex;MFBOPA O.I. C.G. H.G.
17.4 99.5 92.3 At5g10400 830904 histone H3 F:DNA binding;P:nucleosome assembly;C:nucleus, chloroplast, nucleosome;MFPO O.I. C.G. H.G.
17.2 99.5 46.2 At1g63470 842653 DNA-binding family protein F:DNA binding;P:biological_process unknown;C:cellular_component unknown;PMFBO O.I. C.G. H.G.
17.2 99.5 19.6 At1g16070 838177 AtTLP8 (TUBBY LIKE PROTEIN 8) Member of TLP family O.I. C.G. H.G.
17.2 99.5 18.6 At4g30130 829136 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PMF O.I. C.G. H.G.
17.1 99.5 67.6 At3g50070 824169 CYCD3 Encode CYCD3;3, a CYCD3 D-type cyclin. Important for determining cell number in developing lateral organs. Mediating cytokinin effects in apical growth and development. O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
195.1	100.0	141.9	At5g47600	834810	heat shock protein-related	F:molecular_function unknown;P:biological_process unknown;C:unknown;PB	O.I.	C.G.	H.G.
174.7	100.0	107.5	At1g69180	843249	CRC (CRABS CLAW)	Putative transcription factor with zinc finger and helix-loop-helix domains, the later similar to HMG boxes. Involved in specifying abaxial cell fate in the carpel. Four putative LFY binding sites (CCANTG) and two potential binding sites for MADS box proteins known as CArG boxes (CC(A/T)6GG) were found in the region spanning 3.8 Kb upstream of the CRC coding region.	O.I.	C.G.	H.G.
111.1	99.9	114.6	At1g02800	839385	ATCEL2	Encodes a protein with similarity to endo-1,4-b-glucanases and is a member of Glycoside Hydrolase Family 9. CEL2 is induced by nemotodes and is expressed in syncitia induced by Heterodera schachtii.May be involved in the development and function of syncitia.	O.I.	C.G.	H.G.
110.3	99.9	30.5	At3g17010	820957	transcriptional factor B3 family protein	transcriptional factor B3 family protein, contains Pfam profile PF02362: B3 DNA binding domain. Activated by AGAMOUS ina a cal-1, ap1-1 background. Expressed in stamen primordia, the placental region of developing carpels and the ovary.	O.I.	C.G.	H.G.
100.2	99.9	62.0	At3g53310	824499	transcriptional factor B3 family protein	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:endomembrane system;MBOFPV	O.I.	C.G.	H.G.
99.7	99.9	41.3	At2g16210	816118	transcriptional factor B3 family protein	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P	O.I.	C.G.	H.G.
79.6	99.9	49.8	At3g11000	820271	-	F:unknown;P:unknown;C:endomembrane system;POBFMV	O.I.	C.G.	H.G.
56.8	99.8	65.7	At3g06220	819796	DNA binding / transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P	O.I.	C.G.	H.G.
54.6	99.8	85.0	At4g34400	829590	DNA binding / transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:endomembrane system;MOBFPVA	O.I.	C.G.	H.G.
48.2	99.8	32.4	At1g10980	837641	-	F:unknown;P:biological_process unknown;C:vacuole;MFPO	O.I.	C.G.	H.G.
41.0	99.8	40.8	At1g03710	839427	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POB	O.I.	C.G.	H.G.
40.8	99.8	29.0	At5g57720	835879	transcriptional factor B3 family protein	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;POFM	O.I.	C.G.	H.G.
38.6	99.8	22.3	At3g57920	824961	SPL15 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 15)	Encodes a putative transcriptional regulator that is involved in the vegetative to reproductive phase transition. Expression is regulated by MIR156b.	O.I.	C.G.	H.G.
37.9	99.8	27.9	At2g35310	818098	transcriptional factor B3 family protein	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P	O.I.	C.G.	H.G.
36.7	99.7	49.2	At2g34650	818030	PID (PINOID)	Encodes a protein serine/threonine kinase that may act as a positive regulator of cellular auxin efflux, as a a binary switch for PIN polarity, and as a negative regulator of auxin signaling. Recessive mutants exhibit similar phenotypes as pin-formed mutants in flowers and inflorescence but distinct phenotypes in cotyledons and leaves. Expressed in the vascular tissue proximal to root and shoot meristems, shoot apex, and embryos. Expression is induced by auxin. Overexpression of the gene results in phenotypes in the root and shoot similar to those found in auxin-insensitive mutants. The protein physically interacts with TCH3 (TOUCH3) and PID-BINDING PROTEIN 1 (PBP1), a previously uncharacterized protein containing putative EF-hand calcium-binding motifs. Acts together with ENP (ENHANCER OF PINOID) to instruct precursor cells to elaborate cotyledons in the transition stage embryo. Interacts with PDK1. PID autophosphorylation is required for the ability of PID to phosphorylate an exogenous substrate. PID activation loop is required for PDK1-dependent PID phosphorylation and requires the PIF domain. Negative regulator of root hair growth. PID kinase activity is critical for the inhibition of root hair growth and for maintaining the proper subcellular localization of PID.	O.I.	C.G.	H.G.
36.0	99.7	94.2	At2g45190	819127	AFO (ABNORMAL FLORAL ORGANS)	Encodes a member of the YABBY family of transcriptional regulators that is involved in abaxial cell type specification in leaves and fruits. YAB1 acts in a non-cell autonomous fashion within the meristem to affect phyllotactic patterning. The non-autonomous effect on the central region of the meristem is mediated through the activity if Lateral Suppressor (LAS).	O.I.	C.G.	H.G.
34.6	99.7	19.4	At1g31310	840019	hydroxyproline-rich glycoprotein family protein	F:transcription factor activity;P:regulation of transcription;C:unknown;MPOBFVA	O.I.	C.G.	H.G.
34.0	99.7	424.3	At4g29030	829024	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVA	O.I.	C.G.	H.G.
33.2	99.7	77.3	At3g23890	821972	TOPII (TOPOISOMERASE II)	Encodes a topoisomerase II that is highly expressed in young seedlings. The protein is localized in the nucleus and gene expression levels are increased in proliferative tissues.	O.I.	C.G.	H.G.
31.4	99.7	105.0	At4g37750	829931	ANT (AINTEGUMENTA)	ANT is required for control of cell proliferation and encodes a putative transcriptional regulator similar to AP2. Loss of function alleles have reduced fertility, abnormal ovules and abnormal lateral organs. Expressed specifically in the chalaza and in floral organ primordia.	O.I.	C.G.	H.G.
30.8	99.7	174.1	At1g13710	837932	CYP78A5	member of CYP78A	O.I.	C.G.	H.G.
30.4	99.7	24.6	At5g03390	831852	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
30.2	99.7	133.7	At5g22880	832352	HTB2	Encodes a histone 2B (H2B) protein. This protein can be ubiquitinated in planta, and this modification depends on the HUB1 and HUB2 E3 ubiquitin ligases.	O.I.	C.G.	H.G.
29.7	99.7	126.9	At3g61310	825303	DNA-binding family protein	F:DNA binding;P:biological_process unknown;C:cellular_component unknown;PMFOB	O.I.	C.G.	H.G.
29.5	99.7	302.9	At5g48480	834903	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPO	O.I.	C.G.	H.G.
29.1	99.7	46.7	At2g42800	818880	AtRLP29 (Receptor Like Protein 29)	F:protein binding;P:unknown;C:anchored to membrane, plant-type cell wall;PMOBFA	O.I.	C.G.	H.G.
29.0	99.7	27.9	At1g75090	843846	methyladenine glycosylase family protein	F:DNA-3-methyladenine glycosylase I activity, catalytic activity;P:DNA repair, base-excision repair;C:unknown;BOPAMF	O.I.	C.G.	H.G.
29.0	99.7	24.3	At1g63480	842654	DNA-binding family protein	F:DNA binding;P:biological_process unknown;C:unknown;PMFOBV	O.I.	C.G.	H.G.
28.9	99.7	56.9	At1g73590	843693	PIN1 (PIN-FORMED 1)	Encodes an auxin efflux carrier involved in shoot and root development. It is involved in the maintenance of embryonic auxin gradients. Loss of function severely affects organ initiation, pin1 mutants are characterised by an inflorescence meristem that does not initiate any flowers, resulting in the formation of a naked inflorescence stem. PIN1 is involved in the determination of leaf shape by actively promoting development of leaf margin serrations. In roots, the protein mainly resides at the basal end of the vascular cells, but weak signals can be detected in the epidermis and the cortex. Expression levels and polarity of this auxin efflux carrier change during primordium development suggesting that cycles of auxin build-up and depletion accompany, and may direct, different stages of primordium development. PIN1 action on plant development does not strictly require function of PGP1 and PGP19 proteins.	O.I.	C.G.	H.G.
28.9	99.7	17.9	At3g06160	819790	transcriptional factor B3 family protein	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;PO	O.I.	C.G.	H.G.
28.5	99.7	97.2	At5g44620	834490	CYP706A3	member of CYP706A	O.I.	C.G.	H.G.
27.5	99.7	59.1	At2g21050	816640	amino acid permease, putative	F:amino acid transmembrane transporter activity, transporter activity;P:amino acid transport, response to nematode;C:membrane;PFMO	O.I.	C.G.	H.G.
27.3	99.7	102.2	At2g21060	816641	ATGRP2B (GLYCINE-RICH PROTEIN 2B)	glycine-rich protein (AtGRP2b)	O.I.	C.G.	H.G.
26.8	99.7	15.7	At4g31610	829288	REM1 (REPRODUCTIVE MERISTEM 1)	Expressed specifically in reproductive meristems, member of a moderately sized gene family distantly related to known plant DNA binding proteins	O.I.	C.G.	H.G.
26.6	99.7	13.6	At5g09780	830838	transcriptional factor B3 family protein	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P	O.I.	C.G.	H.G.
26.1	99.7	22.9	At1g75640	843899	leucine-rich repeat family protein / protein kinase family protein	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;MPOBFVA	O.I.	C.G.	H.G.
25.5	99.7	72.3	At4g15830	827264	binding	F:binding;P:biological_process unknown;C:cellular_component unknown;MPOF	O.I.	C.G.	H.G.
25.2	99.6	136.9	At4g38660	830022	thaumatin, putative	F:molecular_function unknown;P:response to other organism;C:anchored to membrane;PFMBOV	O.I.	C.G.	H.G.
25.0	99.6	80.6	At1g69120	843244	AP1 (APETALA1)	Floral homeotic gene encoding a MADS domain protein homologous to SRF transcription factors. Specifies floral meristem and sepal identity. Required for the transcriptional activation of AGAMOUS. Interacts with LEAFY.Binds to promoter and regulates the expression of flowering time genes SVP, SOC1 and AGL24.	O.I.	C.G.	H.G.
24.0	99.6	255.9	At1g62500	842547	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;MBPOFVA	O.I.	C.G.	H.G.
24.0	99.6	24.1	At5g66940	836828	Dof-type zinc finger domain-containing protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PO	O.I.	C.G.	H.G.
23.9	99.6	252.6	At3g28500	822480	60S acidic ribosomal protein P2 (RPP2C)	F:structural constituent of ribosome;P:translational elongation;C:cytosol, cytosolic ribosome, ribosome, plasma membrane;MFOPAB	O.I.	C.G.	H.G.
23.9	99.6	15.9	At4g21270	827876	ATK1 (ARABIDOPSIS THALIANA KINESIN 1)	Encodes a kinesin-like motor protein heavy chain. Loss of function mutations have reduced fertility and are defective in spindle formation in male meiosis.	O.I.	C.G.	H.G.
23.8	99.6	29.4	At5g01370	831905	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;OMFBPV	O.I.	C.G.	H.G.
23.7	99.6	83.3	At3g13510	820553	unknown protein	F:unknown;P:biological_process unknown;C:endomembrane system;PFB	O.I.	C.G.	H.G.
23.7	99.6	38.8	At4g29360	829057	glycosyl hydrolase family 17 protein	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to plasma membrane, anchored to membrane;PFOB	O.I.	C.G.	H.G.
23.5	99.6	41.8	At1g68400	843169	leucine-rich repeat transmembrane protein kinase, putative	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
23.3	99.6	30.6	At3g01410	821319	RNase H domain-containing protein	F:ribonuclease H activity, nuclease activity, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;POBAM	O.I.	C.G.	H.G.
23.1	99.6	39.9	At2g25270	817065	unknown protein	F:unknown;P:unknown;C:plasma membrane;POBM	O.I.	C.G.	H.G.
23.0	99.6	25.1	At5g11550	831027	binding	F:binding;P:biological_process unknown;C:chloroplast;PMFOBV	O.I.	C.G.	H.G.
22.9	99.6	48.8	At5g60210	836143	-	F:unknown;P:unknown;C:plasma membrane;MOBFPAV	O.I.	C.G.	H.G.
22.7	99.6	120.8	At3g02640	821289	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PO	O.I.	C.G.	H.G.
22.4	99.6	15.4	At2g40030	818591	NRPD1B	Encodes the unique largest subunit of nuclear DNA-dependent RNA polymerase V; homologous to budding yeast RPB1 and the E. coli RNA polymerase beta prime subunit. Required for normal RNA-directed DNA methylation at non-CG methylation sites and transgene silencing.	O.I.	C.G.	H.G.
22.3	99.6	96.3	At5g28640	832968	AN3 (ANGUSTIFOLIA 3)	Encodes a protein with similarity to mammalian transcriptional coactivator that is involved in cell proliferation during leaf and flower development. Loss of function mutations have narrow, pointed leaves and narrow floral organs. AN3 interacts with members of the growth regulating factor (GRF) family of transcription factors.	O.I.	C.G.	H.G.
22.3	99.6	39.6	At5g07280	830619	EMS1 (EXCESS MICROSPOROCYTES1)	Basic leucine zipper (bZIP) transcription factor. Nuclear localization. Involved in light-regulated transcriptional activation of G-box-containing promoters. Negatively regulated by Cop1. Although cytokinins do not appear to affect the gene's promoter activity, they appear to stabilize the protein. HY5 plays a role in anthocyanin accumulation in far-red light and blue light, but not in red light or in the dark. Mutant studies showed that the gene product is involved in the positive regulation of the PHYA-mediated inhibition of hypocotyl elongation. Binds to G- and Z-boxes, and other ACEs, but not to E-box. Loss of function mutation shows ABA resistant seedling phenotypes suggesting involvement for HY5 in mediating ABA responses. Binds to the promoter of ABI5 and regulates its expression. ems1 mutants lack the tapetum. Acts as regulator of anther cell differentiation	O.I.	C.G.	H.G.
22.0	99.6	374.4	At2g28790	817428	osmotin-like protein, putative	F:molecular_function unknown;P:response to other organism;C:plant-type cell wall;PFMBO	O.I.	C.G.	H.G.
21.9	99.6	27.1	At5g07180	830609	ERL2 (ERECTA-LIKE 2)	Encodes a receptor-like kinase that, together with ER and ERL1 governs the initial decision of protodermal cells to either divide proliferatively to produce pavement cells or divide asymmetrically to generate stomatal complexes. It is also important for maintaining stomatal stem cell activity and preventing terminal differentiation of the meristemoid into the guard mother cell. When heterozygous in an er/erl1 null background, plants are female sterile due to cell division defect in the integuments.	O.I.	C.G.	H.G.
21.9	99.6	10.6	At1g01130	839359	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
21.6	99.6	33.5	At1g27370	839626	squamosa promoter-binding protein-like 10 (SPL10)	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PM	O.I.	C.G.	H.G.
21.5	99.6	70.3	At5g20740	832197	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
21.4	99.6	34.8	At3g61490	825322	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA	O.I.	C.G.	H.G.
21.2	99.6	59.9	At3g14190	820636	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
21.1	99.6	12.1	At1g51670	841592	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
21.0	99.6	78.3	At3g17840	821053	RLK902	Encodes a receptor-like kinase found at the cell surface of various tissues. Its function remains unknown.	O.I.	C.G.	H.G.
20.7	99.6	36.3	At3g13960	820609	AtGRF5 (GROWTH-REGULATING FACTOR 5)	Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in root, shoot and flower.	O.I.	C.G.	H.G.
20.6	99.6	41.1	At4g31360	829263	selenium binding	F:selenium binding;P:cell redox homeostasis;C:unknown;MOPFB	O.I.	C.G.	H.G.
20.5	99.6	8.9	At4g28560	828974	RIC7 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 7)	encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Most similar to RIC6 and RIC8 (subfamily group II). Gene is expressed in all tissues examined.	O.I.	C.G.	H.G.
20.4	99.6	103.5	At4g33260	829462	CDC20.2	putative cdc20 protein (CDC20.2)	O.I.	C.G.	H.G.
20.4	99.6	50.2	At2g32765	817837	SUMO5 (SMALL UBIQUITINRELATED MODIFIER 5)	Encodes a small ubiquitin-like modifier (SUMO) protein that becomes covalently attached to various intracellular protein targets through an isopeptide bond. SUMOylation typically has a post-translational effect on the behavior of the target protein.	O.I.	C.G.	H.G.
20.3	99.6	29.1	At5g59000	836017	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOFPVBA	O.I.	C.G.	H.G.
20.3	99.6	15.4	At3g58770	825046	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
20.2	99.6	13.0	At1g11730	837717	galactosyltransferase family protein	F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:protein amino acid glycosylation;C:membrane;MPO	O.I.	C.G.	H.G.
19.9	99.6	39.9	At1g21090	838705	hydroxyproline-rich glycoprotein family protein	F:unknown;P:unknown;C:anchored to membrane;PMFOB	O.I.	C.G.	H.G.
19.5	99.6	61.1	At5g60910	836212	AGL8 (agamous-like 8)	MADS box gene negatively regulated by APETALA1	O.I.	C.G.	H.G.
19.4	99.6	80.1	At1g75240	843861	AtHB33 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 33)	F:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;PMOFBV	O.I.	C.G.	H.G.
19.4	99.6	41.7	At5g37010	833671	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:unknown;MOFBPVA	O.I.	C.G.	H.G.
19.1	99.6	51.2	At5g48360	834889	formin homology 2 domain-containing protein / FH2 domain-containing protein	F:actin binding;P:cellular component organization, actin cytoskeleton organization;C:unknown;MPOFVBA	O.I.	C.G.	H.G.
19.0	99.5	87.4	At1g02730	839467	ATCSLD5	Encodes a gene similar to cellulose synthase. Knock-out mutant has reduced growth, reduced xylan level and reduced xylan synthase activity in stems.	O.I.	C.G.	H.G.
18.8	99.5	39.7	At2g33860	817956	ETT (ETTIN)	ettin (ett) mutations have pleiotropic effects on Arabidopsis flower development, causing increases in perianth organ number, decreases in stamen number and anther formation, and apical-basal patterning defects in the gynoecium. The ETTIN gene encodes a protein with homology to DNA binding proteins which bind to auxin response elements. ETT transcript is expressed throughout stage 1 floral meristems and subsequently resolves to a complex pattern within petal, stamen and carpel primordia. ETT probably functions to impart regional identity in floral meristems that affects perianth organ number spacing, stamen formation, and regional differentiation in stamens and the gynoecium. During stage 5, ETT expression appears in a ring at the top of the floral meristem before morphological appearance of the gynoecium, consistent with the proposal that ETT is involved in prepatterning apical and basal boundaries in the gynoecium primordium. It is a target of the ta-siRNA tasiR-ARF.	O.I.	C.G.	H.G.
18.7	99.5	73.6	At4g36180	829775	leucine-rich repeat family protein	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;MPOBFVA	O.I.	C.G.	H.G.
18.4	99.5	154.2	At2g26330	817173	ER (ERECTA)	Homologous to receptor protein kinases. Involved in specification of organs originating from the shoot apical meristem. Contains a cytoplasmic protein kinase catalytic domain, a transmembrane region, and an extracellular leucine-rich repeat. ER has been identified as a quantitative trait locus for transpiration efficiency by influencing epidermal and mesophyll development, stomatal density and porosity of leaves. It has been implicated in resistance to the bacterium Ralstonia solanacearum and to the necrotrophic fungus Plectosphaerella cucumerina. Together with ERL1 and ERL2, ER governs the initial decision of protodermal cells to either divide proliferatively to produce pavement cells or divide asymmetrically to generate stomatal complexes.	O.I.	C.G.	H.G.
18.4	99.5	153.6	At2g21130	816648	peptidyl-prolyl cis-trans isomerase / cyclophilin (CYP2) / rotamase	F:peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:plasma membrane;OBMFPAV	O.I.	C.G.	H.G.
18.3	99.5	163.4	At2g07783	3768188	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
18.3	99.5	30.9	At1g77630	844098	peptidoglycan-binding LysM domain-containing protein	F:unknown;P:cell wall macromolecule catabolic process;C:anchored to plasma membrane, plasma membrane, anchored to membrane;PBOMF	O.I.	C.G.	H.G.
18.2	99.5	69.9	At3g18000	821324	XPL1 (XIPOTL 1)	Arabidopsis thaliana N-methyltransferase-like protein mRNA.	O.I.	C.G.	H.G.
18.0	99.5	165.5	At4g31840	829313	plastocyanin-like domain-containing protein	F:electron carrier activity, copper ion binding;P:unknown;C:plasma membrane, anchored to membrane;P	O.I.	C.G.	H.G.
17.9	99.5	60.3	At5g65410	836666	HB25 (HOMEOBOX PROTEIN 25)	Encodes ZFHD2, a member of the zinc finger homeodomain transcriptional factor family.	O.I.	C.G.	H.G.
17.8	99.5	384.0	At4g03210	828024	XTH9 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 9)	encodes a member of xyloglucan endotransglucosylase/hydrolases (XTHs) that catalyze the cleavage and molecular grafting of xyloglucan chains function in loosening and rearrangement of the cell wall. Gene is expressed in shoot apex region, flower buds, flower stalks and internodes bearing flowers.	O.I.	C.G.	H.G.
17.7	99.5	36.6	At3g61250	825297	AtMYB17 (myb domain protein 17)	Member of the R2R3 factor gene family.	O.I.	C.G.	H.G.
17.7	99.5	27.5	At4g15140	827180	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
17.6	99.5	90.1	At5g26850	832743	-	F:unknown;P:biological_process unknown;C:chloroplast;MPFO	O.I.	C.G.	H.G.
17.6	99.5	27.1	At1g03780	839140	targeting protein-related	Homolog of vertebrate TPX2. Protein has three domains involved in nuclear targeting, one in nuclear export and two in microtubule binding. Involved in mitotic spindle assembly during late prophase and early prometaphase.	O.I.	C.G.	H.G.
17.5	99.5	185.1	At1g18250	838405	ATLP-1	encodes a thaumatin-like protein	O.I.	C.G.	H.G.
17.5	99.5	76.9	At1g19850	838573	MP (MONOPTEROS)	Encodes a transcription factor (IAA24) mediating embryo axis formation and vascular development. Similar to AUXIN RESPONSIVE FACTOR 1 (ARF1) shown to bind to auxin responsive elements (AREs), and to the maize transcriptional activator VIVIPAROUS 1( VP1). In situ hybridization shows expression in provascular tissue of embryos, the emerging shoot primordia, then is restricted to provascular tissue, and in the root central vascular cylinder.	O.I.	C.G.	H.G.
17.5	99.5	40.0	At5g13840	831230	FZR3 (FIZZY-RELATED 3)	F:signal transducer activity;P:signal transduction;C:chloroplast, heterotrimeric G-protein complex;MFBOPA	O.I.	C.G.	H.G.
17.4	99.5	92.3	At5g10400	830904	histone H3	F:DNA binding;P:nucleosome assembly;C:nucleus, chloroplast, nucleosome;MFPO	O.I.	C.G.	H.G.
17.2	99.5	46.2	At1g63470	842653	DNA-binding family protein	F:DNA binding;P:biological_process unknown;C:cellular_component unknown;PMFBO	O.I.	C.G.	H.G.
17.2	99.5	19.6	At1g16070	838177	AtTLP8 (TUBBY LIKE PROTEIN 8)	Member of TLP family	O.I.	C.G.	H.G.
17.2	99.5	18.6	At4g30130	829136	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PMF	O.I.	C.G.	H.G.
17.1	99.5	67.6	At3g50070	824169	CYCD3	Encode CYCD3;3, a CYCD3 D-type cyclin. Important for determining cell number in developing lateral organs. Mediating cytokinin effects in apical growth and development.	O.I.	C.G.	H.G.

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GSM ID	GSM131673
Assay name	ATGE_49_A
GSE experiment	GSE5633: AtGenExpress: Developmental series (shoots and stems)

Microarray experiments to specifically-expressed genes

GSM ID GSM131673 Assay name ATGE_49_A GSE experiment GSE5633: AtGenExpress: Developmental series (shoots and stems)

GSM ID GSM131673

Assay name ATGE_49_A

GSE experiment GSE5633: AtGenExpress: Developmental series (shoots and stems)