CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM131666

Assay name ATGE_46_C

GSE experiment GSE5633: AtGenExpress: Developmental series (shoots and stems)

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
72.5 99.9 24.7 At3g17010 820957 transcriptional factor B3 family protein transcriptional factor B3 family protein, contains Pfam profile PF02362: B3 DNA binding domain. Activated by AGAMOUS ina a cal-1, ap1-1 background. Expressed in stamen primordia, the placental region of developing carpels and the ovary. O.I. C.G. H.G.
62.4 99.8 90.9 At4g34400 829590 DNA binding / transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:endomembrane system;MOBFPVA O.I. C.G. H.G.
62.3 99.8 80.2 At5g47600 834810 heat shock protein-related F:molecular_function unknown;P:biological_process unknown;C:unknown;PB O.I. C.G. H.G.
49.2 99.8 142.9 At5g28640 832968 AN3 (ANGUSTIFOLIA 3) Encodes a protein with similarity to mammalian transcriptional coactivator that is involved in cell proliferation during leaf and flower development. Loss of function mutations have narrow, pointed leaves and narrow floral organs. AN3 interacts with members of the growth regulating factor (GRF) family of transcription factors. O.I. C.G. H.G.
48.8 99.8 60.5 At2g42800 818880 AtRLP29 (Receptor Like Protein 29) F:protein binding;P:unknown;C:anchored to membrane, plant-type cell wall;PMOBFA O.I. C.G. H.G.
48.5 99.8 60.7 At3g06220 819796 DNA binding / transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P O.I. C.G. H.G.
46.1 99.8 76.6 At4g20320 827780 CTP synthase/ catalytic F:CTP synthase activity, catalytic activity;P:pyrimidine ribonucleotide metabolic process, pyrimidine nucleotide biosynthetic process;C:cellular_component unknown;OBMFAP O.I. C.G. H.G.
43.4 99.8 83.8 At4g29700 829091 type I phosphodiesterase/nucleotide pyrophosphatase family protein F:hydrolase activity, catalytic activity;P:metabolic process, nucleotide metabolic process;C:vacuole;MBOFPAV O.I. C.G. H.G.
42.6 99.8 98.9 At5g20740 832197 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
41.3 99.8 37.3 At5g07180 830609 ERL2 (ERECTA-LIKE 2) Encodes a receptor-like kinase that, together with ER and ERL1 governs the initial decision of protodermal cells to either divide proliferatively to produce pavement cells or divide asymmetrically to generate stomatal complexes. It is also important for maintaining stomatal stem cell activity and preventing terminal differentiation of the meristemoid into the guard mother cell. When heterozygous in an er/erl1 null background, plants are female sterile due to cell division defect in the integuments. O.I. C.G. H.G.
40.1 99.8 123.8 At2g21060 816641 ATGRP2B (GLYCINE-RICH PROTEIN 2B) glycine-rich protein (AtGRP2b) O.I. C.G. H.G.
38.9 99.8 85.7 At1g53160 841749 SPL4 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 4) Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR. O.I. C.G. H.G.
38.3 99.8 27.6 At5g03390 831852 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
37.9 99.8 56.4 At2g33860 817956 ETT (ETTIN) ettin (ett) mutations have pleiotropic effects on Arabidopsis flower development, causing increases in perianth organ number, decreases in stamen number and anther formation, and apical-basal patterning defects in the gynoecium. The ETTIN gene encodes a protein with homology to DNA binding proteins which bind to auxin response elements. ETT transcript is expressed throughout stage 1 floral meristems and subsequently resolves to a complex pattern within petal, stamen and carpel primordia. ETT probably functions to impart regional identity in floral meristems that affects perianth organ number spacing, stamen formation, and regional differentiation in stamens and the gynoecium. During stage 5, ETT expression appears in a ring at the top of the floral meristem before morphological appearance of the gynoecium, consistent with the proposal that ETT is involved in prepatterning apical and basal boundaries in the gynoecium primordium. It is a target of the ta-siRNA tasiR-ARF. O.I. C.G. H.G.
36.7 99.7 25.3 At1g68640 843194 PAN (PERIANTHIA) Encodes bZIP-transcription factor. Mutant plants have extra floral organs. O.I. C.G. H.G.
36.5 99.7 48.2 At3g13960 820609 AtGRF5 (GROWTH-REGULATING FACTOR 5) Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in root, shoot and flower. O.I. C.G. H.G.
35.6 99.7 19.8 At3g06160 819790 transcriptional factor B3 family protein F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;PO O.I. C.G. H.G.
34.3 99.7 63.6 At1g02800 839385 ATCEL2 Encodes a protein with similarity to endo-1,4-b-glucanases and is a member of Glycoside Hydrolase Family 9. CEL2 is induced by nemotodes and is expressed in syncitia induced by Heterodera schachtii.May be involved in the development and function of syncitia. O.I. C.G. H.G.
33.9 99.7 19.9 At3g58770 825046 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
32.4 99.7 178.7 At1g13710 837932 CYP78A5 member of CYP78A O.I. C.G. H.G.
32.3 99.7 138.3 At5g22880 832352 HTB2 Encodes a histone 2B (H2B) protein. This protein can be ubiquitinated in planta, and this modification depends on the HUB1 and HUB2 E3 ubiquitin ligases. O.I. C.G. H.G.
32.0 99.7 96.2 At4g36180 829775 leucine-rich repeat family protein F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. C.G. H.G.
31.3 99.7 152.3 At4g38660 830022 thaumatin, putative F:molecular_function unknown;P:response to other organism;C:anchored to membrane;PFMBOV O.I. C.G. H.G.
31.0 99.7 25.0 At4g30130 829136 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PMF O.I. C.G. H.G.
30.6 99.7 19.9 At3g57920 824961 SPL15 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 15) Encodes a putative transcriptional regulator that is involved in the vegetative to reproductive phase transition. Expression is regulated by MIR156b. O.I. C.G. H.G.
30.4 99.7 74.0 At3g23890 821972 TOPII (TOPOISOMERASE II) Encodes a topoisomerase II that is highly expressed in young seedlings. The protein is localized in the nucleus and gene expression levels are increased in proliferative tissues. O.I. C.G. H.G.
29.5 99.7 24.7 At5g57720 835879 transcriptional factor B3 family protein F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;POFM O.I. C.G. H.G.
29.1 99.7 98.3 At5g44620 834490 CYP706A3 member of CYP706A O.I. C.G. H.G.
29.1 99.7 43.0 At4g29360 829057 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to plasma membrane, anchored to membrane;PFOB O.I. C.G. H.G.
28.5 99.7 19.0 At1g70510 843388 KNAT2 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA 2) A member of class I knotted1-like homeobox gene family (together with KNAT1). Similar to the knotted1 (kn1) homeobox gene of maize. KNAT2 acts synergistically with cytokinins and antagonistically with ethylene based on ectopic expression studies in different mutant backgrounds and hormone treatments. In addition, KNAT2 is negatively regulated by AS and YABBY genes. KNAT2 is strongly expressed in the shoot apex of seedlings, while in mature plants the gene is primarily expressed in flowers and inflorescence stems. O.I. C.G. H.G.
28.2 99.7 296.2 At5g48480 834903 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPO O.I. C.G. H.G.
28.2 99.7 27.5 At1g75090 843846 methyladenine glycosylase family protein F:DNA-3-methyladenine glycosylase I activity, catalytic activity;P:DNA repair, base-excision repair;C:unknown;BOPAMF O.I. C.G. H.G.
28.1 99.7 85.4 At1g69120 843244 AP1 (APETALA1) Floral homeotic gene encoding a MADS domain protein homologous to SRF transcription factors. Specifies floral meristem and sepal identity. Required for the transcriptional activation of AGAMOUS. Interacts with LEAFY.Binds to promoter and regulates the expression of flowering time genes SVP, SOC1 and AGL24. O.I. C.G. H.G.
28.1 99.7 17.5 At1g31310 840019 hydroxyproline-rich glycoprotein family protein F:transcription factor activity;P:regulation of transcription;C:unknown;MPOBFVA O.I. C.G. H.G.
27.3 99.7 42.4 At2g34650 818030 PID (PINOID) Encodes a protein serine/threonine kinase that may act as a positive regulator of cellular auxin efflux, as a a binary switch for PIN polarity, and as a negative regulator of auxin signaling. Recessive mutants exhibit similar phenotypes as pin-formed mutants in flowers and inflorescence but distinct phenotypes in cotyledons and leaves. Expressed in the vascular tissue proximal to root and shoot meristems, shoot apex, and embryos. Expression is induced by auxin. Overexpression of the gene results in phenotypes in the root and shoot similar to those found in auxin-insensitive mutants. The protein physically interacts with TCH3 (TOUCH3) and PID-BINDING PROTEIN 1 (PBP1), a previously uncharacterized protein containing putative EF-hand calcium-binding motifs. Acts together with ENP (ENHANCER OF PINOID) to instruct precursor cells to elaborate cotyledons in the transition stage embryo. Interacts with PDK1. PID autophosphorylation is required for the ability of PID to phosphorylate an exogenous substrate. PID activation loop is required for PDK1-dependent PID phosphorylation and requires the PIF domain. Negative regulator of root hair growth. PID kinase activity is critical for the inhibition of root hair growth and for maintaining the proper subcellular localization of PID. O.I. C.G. H.G.
26.9 99.7 27.1 At5g11550 831027 binding F:binding;P:biological_process unknown;C:chloroplast;PMFOBV O.I. C.G. H.G.
26.9 99.7 21.5 At2g16210 816118 transcriptional factor B3 family protein F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P O.I. C.G. H.G.
26.4 99.7 36.7 At1g03170 839563 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
26.1 99.7 371.6 At4g29030 829024 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVA O.I. C.G. H.G.
26.1 99.7 95.7 At4g37750 829931 ANT (AINTEGUMENTA) ANT is required for control of cell proliferation and encodes a putative transcriptional regulator similar to AP2. Loss of function alleles have reduced fertility, abnormal ovules and abnormal lateral organs. Expressed specifically in the chalaza and in floral organ primordia. O.I. C.G. H.G.
25.5 99.7 115.6 At4g33260 829462 CDC20.2 putative cdc20 protein (CDC20.2) O.I. C.G. H.G.
25.2 99.6 57.8 At2g42200 818820 SPL9 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 9) Encodes a putative transcriptional regulator that is involved in the vegetative to reproductive phase transition. Expresssion is regulated by MIR156b. O.I. C.G. H.G.
25.2 99.6 44.3 At5g50740 835146 metal ion binding F:metal ion binding;P:metal ion transport;C:cellular_component unknown;POMBFV O.I. C.G. H.G.
25.0 99.6 16.2 At2g40030 818591 NRPD1B Encodes the unique largest subunit of nuclear DNA-dependent RNA polymerase V; homologous to budding yeast RPB1 and the E. coli RNA polymerase beta prime subunit. Required for normal RNA-directed DNA methylation at non-CG methylation sites and transgene silencing. O.I. C.G. H.G.
24.8 99.6 11.3 At1g01130 839359 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
24.7 99.6 28.8 At1g67040 843024 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMF O.I. C.G. H.G.
24.5 99.6 110.0 At1g44760 841040 universal stress protein (USP) family protein F:molecular_function unknown;P:response to stress;C:unknown;PMO O.I. C.G. H.G.
24.4 99.6 51.5 At3g07540 819943 formin homology 2 domain-containing protein / FH2 domain-containing protein F:actin binding;P:cellular component organization, actin cytoskeleton organization;C:plasma membrane;MOPFBV O.I. C.G. H.G.
24.3 99.6 123.3 At2g33810 817948 SPL3 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 3) Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It binds DNA, may directly regulate AP1, and is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR. O.I. C.G. H.G.
24.3 99.6 80.7 At3g50070 824169 CYCD3 Encode CYCD3;3, a CYCD3 D-type cyclin. Important for determining cell number in developing lateral organs. Mediating cytokinin effects in apical growth and development. O.I. C.G. H.G.
24.2 99.6 25.2 At1g28360 839732 ERF12 (ERF DOMAIN PROTEIN 12) encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ERF12). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole. O.I. C.G. H.G.
24.1 99.6 30.4 At3g53310 824499 transcriptional factor B3 family protein F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:endomembrane system;MBOFPV O.I. C.G. H.G.
23.8 99.6 13.1 At4g35900 829744 FD bZIP protein required for positive regulation of flowering. Mutants are late flowering. FD interacts with FT to promote flowering.Expressed in the shoot apex in floral anlagen, then declines in floral primordia. O.I. C.G. H.G.
23.7 99.6 76.2 At1g57820 842157 VIM1 (VARIANT IN METHYLATION 1) Encodes a 645-amino acid methylcytosine-binding protein with a PHD domain, two RING finger domains, and an SRA domain that is involved in centromere heterochromatinization. This protein functions as an E3 ubiquitin ligase in vitro. The protein has been shown to bind to methylated cytosines of CG, CNG and CNN motifs via its SRA domain but has a preference for the former. It plays a role in the establishment/maintenance of chromatin structure during cell division and is localized in the nucleus. Plants over-expressing VIM1/ORTH2 show an inhibition in root growth and a delay in flowering. Both over-expression of GFP:ORTH2 and loss of ORTH2/VIM1 lead to decreased levels of DNA methylation. GFP:ORTH2 over-expressers also have increased levels of FWA transcripts. O.I. C.G. H.G.
23.7 99.6 27.2 At3g11000 820271 - F:unknown;P:unknown;C:endomembrane system;POBFMV O.I. C.G. H.G.
23.5 99.6 53.3 At5g11160 830985 APT5 (Adenine phosphoribosyltransferase 5) F:adenine phosphoribosyltransferase activity;P:nucleoside metabolic process, adenine salvage, anaerobic respiration, nucleotide metabolic process;C:cellular_component unknown;BOAMFP O.I. C.G. H.G.
23.3 99.6 22.9 At1g16070 838177 AtTLP8 (TUBBY LIKE PROTEIN 8) Member of TLP family O.I. C.G. H.G.
23.2 99.6 30.7 At1g03710 839427 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POB O.I. C.G. H.G.
23.2 99.6 8.5 At3g15170 820748 CUC1 (CUP-SHAPED COTYLEDON1) Encodes a transcription factor involved in shoot apical meristem formation and auxin-mediated lateral root formation. The gene is thought not to be involved in stress responses (NaCl, auxins, ethylene). Cuc mutant was first recognized at the heart stage, where embryos lacking two distinct bulges of cotyledonary primordia were observed. O.I. C.G. H.G.
23.1 99.6 18.7 At5g46590 834702 anac096 (Arabidopsis NAC domain containing protein 96) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P O.I. C.G. H.G.
23.0 99.6 20.9 At1g23380 838946 KNAT6 homeodomain transcription factor KNAT6, belonging to class I of KN transcription factor family (which also includes KNAT1 and KNAT2). Expression is increased in as and bop1 leaf mutants. O.I. C.G. H.G.
22.9 99.6 22.4 At3g63440 825519 CKX6 (CYTOKININ OXIDASE/DEHYDROGENASE 6) This gene used to be called AtCKX7. It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins. O.I. C.G. H.G.
22.7 99.6 41.4 At3g61250 825297 AtMYB17 (myb domain protein 17) Member of the R2R3 factor gene family. O.I. C.G. H.G.
22.5 99.6 244.8 At3g28500 822480 60S acidic ribosomal protein P2 (RPP2C) F:structural constituent of ribosome;P:translational elongation;C:cytosol, cytosolic ribosome, ribosome, plasma membrane;MFOPAB O.I. C.G. H.G.
22.5 99.6 95.2 At1g02730 839467 ATCSLD5 Encodes a gene similar to cellulose synthase. Knock-out mutant has reduced growth, reduced xylan level and reduced xylan synthase activity in stems. O.I. C.G. H.G.
22.5 99.6 55.5 At5g48360 834889 formin homology 2 domain-containing protein / FH2 domain-containing protein F:actin binding;P:cellular component organization, actin cytoskeleton organization;C:unknown;MPOFVBA O.I. C.G. H.G.
22.5 99.6 53.4 At2g21050 816640 amino acid permease, putative F:amino acid transmembrane transporter activity, transporter activity;P:amino acid transport, response to nematode;C:membrane;PFMO O.I. C.G. H.G.
22.1 99.6 125.2 At1g70710 843408 ATGH9B1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B1) endo-1,4-beta-glucanase. Involved in cell elongation. O.I. C.G. H.G.
22.0 99.6 32.3 At1g04520 839502 PDLP2 (PLASMODESMATA-LOCATED PROTEIN 2) F:molecular_function unknown;P:N-terminal protein myristoylation, plasmodesmata-mediated intercellular transport;C:plasmodesma;PBFMO O.I. C.G. H.G.
21.7 99.6 91.1 At1g14900 838055 HMGA (HIGH MOBILITY GROUP A) Encodes a protein belonging to the subgroup of HMGA (high mobility group A) proteins that interact with A/T-rich stretches of DNA. O.I. C.G. H.G.
21.6 99.6 45.6 At5g44560 834483 VPS2.2 F:unknown;P:vesicle-mediated transport;C:ESCRT III complex;MPFOB O.I. C.G. H.G.
21.6 99.6 10.8 At5g65510 836677 AIL7 (AINTEGUMENTA-like 7) F:transcription factor activity, DNA binding;P:organ morphogenesis, regulation of transcription, DNA-dependent;C:nucleus;POB O.I. C.G. H.G.
21.5 99.6 149.8 At4g02290 828080 AtGH9B13 (Arabidopsis thaliana glycosyl hydrolase 9B13) F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOF O.I. C.G. H.G.
21.5 99.6 67.7 At5g51560 835230 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
21.4 99.6 39.9 At1g68400 843169 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
21.4 99.6 27.6 At5g43500 834370 ATARP9 (ACTIN-RELATED PROTEIN 9) encodes a protein whose sequence is similar to actin-related proteins (ARPs) in other organisms. Member of nuclear ARP family of genes. O.I. C.G. H.G.
21.3 99.6 20.8 At1g63480 842654 DNA-binding family protein F:DNA binding;P:biological_process unknown;C:unknown;PMFOBV O.I. C.G. H.G.
21.2 99.6 367.9 At2g28790 817428 osmotin-like protein, putative F:molecular_function unknown;P:response to other organism;C:plant-type cell wall;PFMBO O.I. C.G. H.G.
21.2 99.6 101.9 At5g10400 830904 histone H3 F:DNA binding;P:nucleosome assembly;C:nucleus, chloroplast, nucleosome;MFPO O.I. C.G. H.G.
21.2 99.6 32.0 At5g56220 835721 nucleoside-triphosphatase/ nucleotide binding F:nucleoside-triphosphatase activity, nucleotide binding;P:unknown;C:chloroplast;OPMBFVA O.I. C.G. H.G.
21.0 99.6 40.3 At2g27880 817334 AGO5 (ARGONAUTE 5) F:nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBV O.I. C.G. H.G.
21.0 99.6 14.9 At4g21270 827876 ATK1 (ARABIDOPSIS THALIANA KINESIN 1) Encodes a kinesin-like motor protein heavy chain. Loss of function mutations have reduced fertility and are defective in spindle formation in male meiosis. O.I. C.G. H.G.
21.0 99.6 7.2 At1g37140 840631 MCT1 (mei2 C-Terminal RRM only like 1) a member of mei2-like gene family; phylogenetic analysis revealed that it belongs to the fourth clade of mei2-like proteins, with conserved C-terminal RNA recognition motif (RRM) only. O.I. C.G. H.G.
20.9 99.6 37.9 At2g25270 817065 unknown protein F:unknown;P:unknown;C:plasma membrane;POBM O.I. C.G. H.G.
20.8 99.6 48.2 At1g73590 843693 PIN1 (PIN-FORMED 1) Encodes an auxin efflux carrier involved in shoot and root development. It is involved in the maintenance of embryonic auxin gradients. Loss of function severely affects organ initiation, pin1 mutants are characterised by an inflorescence meristem that does not initiate any flowers, resulting in the formation of a naked inflorescence stem. PIN1 is involved in the determination of leaf shape by actively promoting development of leaf margin serrations. In roots, the protein mainly resides at the basal end of the vascular cells, but weak signals can be detected in the epidermis and the cortex. Expression levels and polarity of this auxin efflux carrier change during primordium development suggesting that cycles of auxin build-up and depletion accompany, and may direct, different stages of primordium development. PIN1 action on plant development does not strictly require function of PGP1 and PGP19 proteins. O.I. C.G. H.G.
20.7 99.6 237.5 At1g62500 842547 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;MBPOFVA O.I. C.G. H.G.
20.7 99.6 105.8 At3g61310 825303 DNA-binding family protein F:DNA binding;P:biological_process unknown;C:cellular_component unknown;PMFOB O.I. C.G. H.G.
20.6 99.6 200.9 At1g18250 838405 ATLP-1 encodes a thaumatin-like protein O.I. C.G. H.G.
20.6 99.6 39.0 At5g43020 834317 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
20.5 99.6 121.7 At5g16250 831485 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
20.4 99.6 257.2 At1g52030 841632 MBP2 (MYROSINASE-BINDING PROTEIN 2) Similar to myrosinase binding proteins which may be involved in metabolizing glucosinolates and forming defense compounds to protect against herbivory. Also similar to lectins and other agglutinating factors. Expressed only in flowers. O.I. C.G. H.G.
20.4 99.6 40.3 At3g18960 821429 transcriptional factor B3 family protein F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P O.I. C.G. H.G.
20.3 99.6 82.8 At1g19850 838573 MP (MONOPTEROS) Encodes a transcription factor (IAA24) mediating embryo axis formation and vascular development. Similar to AUXIN RESPONSIVE FACTOR 1 (ARF1) shown to bind to auxin responsive elements (AREs), and to the maize transcriptional activator VIVIPAROUS 1( VP1). In situ hybridization shows expression in provascular tissue of embryos, the emerging shoot primordia, then is restricted to provascular tissue, and in the root central vascular cylinder. O.I. C.G. H.G.
20.3 99.6 69.5 At4g26760 828783 MAP65-2 F:molecular_function unknown;P:anaphase;C:cortical microtubule, preprophase band, phragmoplast;MOBFPAV O.I. C.G. H.G.
20.3 99.6 50.0 At2g32765 817837 SUMO5 (SMALL UBIQUITINRELATED MODIFIER 5) Encodes a small ubiquitin-like modifier (SUMO) protein that becomes covalently attached to various intracellular protein targets through an isopeptide bond. SUMOylation typically has a post-translational effect on the behavior of the target protein. O.I. C.G. H.G.
20.1 99.6 30.8 At3g54720 824637 AMP1 (ALTERED MERISTEM PROGRAM 1) Encodes glutamate carboxypeptidase. Various alleles show-increased cotyledon number and rate of leaf initiation, show transformation of leaves to cotyledons, altered flowering time and photomorphogenesis and an increased level of cytokinin biosynthesis. Involved in ethylene enhanced hypocotyl elongation in the light. Strong genetic interaction between TGH and AMP1. O.I. C.G. H.G.
20.1 99.6 14.2 At4g27590 828869 copper-binding protein-related F:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:cellular_component unknown;P O.I. C.G. H.G.
20.1 99.6 13.6 At4g31610 829288 REM1 (REPRODUCTIVE MERISTEM 1) Expressed specifically in reproductive meristems, member of a moderately sized gene family distantly related to known plant DNA binding proteins O.I. C.G. H.G.
20.1 99.6 8.0 At1g80100 844350 AHP6 (ARABIDOPSIS HISTIDINE PHOSPHOTRANSFER PROTEIN 6) AHP6 lacks the conserved histidine residue (Asn83 in AHP6b), which is required for phosphotransfer, present in the other AHPs. AHP6 does not appear to have phosphotransfer activity. Acts as an inhibitor of cytokinin signaling by interacting with the phosphorelay machinery. Expressed in developing protoxylem and associated pericycle cell files. Negative regulator of cytokinin signaling. Expression is down-regulated by cytokinins. There are two alternatively spliced genes for this locus, AHP6a and AHP6b, differing in the length of the first exon. In ahp6-2 seedlings, only the AHP6a transcript is present. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6). O.I. C.G. H.G.
20.0 99.6 31.0 At1g56020 842053 unknown protein F:unknown;P:unknown;C:unknown;OMFBPV O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
72.5	99.9	24.7	At3g17010	820957	transcriptional factor B3 family protein	transcriptional factor B3 family protein, contains Pfam profile PF02362: B3 DNA binding domain. Activated by AGAMOUS ina a cal-1, ap1-1 background. Expressed in stamen primordia, the placental region of developing carpels and the ovary.	O.I.	C.G.	H.G.
62.4	99.8	90.9	At4g34400	829590	DNA binding / transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:endomembrane system;MOBFPVA	O.I.	C.G.	H.G.
62.3	99.8	80.2	At5g47600	834810	heat shock protein-related	F:molecular_function unknown;P:biological_process unknown;C:unknown;PB	O.I.	C.G.	H.G.
49.2	99.8	142.9	At5g28640	832968	AN3 (ANGUSTIFOLIA 3)	Encodes a protein with similarity to mammalian transcriptional coactivator that is involved in cell proliferation during leaf and flower development. Loss of function mutations have narrow, pointed leaves and narrow floral organs. AN3 interacts with members of the growth regulating factor (GRF) family of transcription factors.	O.I.	C.G.	H.G.
48.8	99.8	60.5	At2g42800	818880	AtRLP29 (Receptor Like Protein 29)	F:protein binding;P:unknown;C:anchored to membrane, plant-type cell wall;PMOBFA	O.I.	C.G.	H.G.
48.5	99.8	60.7	At3g06220	819796	DNA binding / transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P	O.I.	C.G.	H.G.
46.1	99.8	76.6	At4g20320	827780	CTP synthase/ catalytic	F:CTP synthase activity, catalytic activity;P:pyrimidine ribonucleotide metabolic process, pyrimidine nucleotide biosynthetic process;C:cellular_component unknown;OBMFAP	O.I.	C.G.	H.G.
43.4	99.8	83.8	At4g29700	829091	type I phosphodiesterase/nucleotide pyrophosphatase family protein	F:hydrolase activity, catalytic activity;P:metabolic process, nucleotide metabolic process;C:vacuole;MBOFPAV	O.I.	C.G.	H.G.
42.6	99.8	98.9	At5g20740	832197	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
41.3	99.8	37.3	At5g07180	830609	ERL2 (ERECTA-LIKE 2)	Encodes a receptor-like kinase that, together with ER and ERL1 governs the initial decision of protodermal cells to either divide proliferatively to produce pavement cells or divide asymmetrically to generate stomatal complexes. It is also important for maintaining stomatal stem cell activity and preventing terminal differentiation of the meristemoid into the guard mother cell. When heterozygous in an er/erl1 null background, plants are female sterile due to cell division defect in the integuments.	O.I.	C.G.	H.G.
40.1	99.8	123.8	At2g21060	816641	ATGRP2B (GLYCINE-RICH PROTEIN 2B)	glycine-rich protein (AtGRP2b)	O.I.	C.G.	H.G.
38.9	99.8	85.7	At1g53160	841749	SPL4 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 4)	Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR.	O.I.	C.G.	H.G.
38.3	99.8	27.6	At5g03390	831852	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
37.9	99.8	56.4	At2g33860	817956	ETT (ETTIN)	ettin (ett) mutations have pleiotropic effects on Arabidopsis flower development, causing increases in perianth organ number, decreases in stamen number and anther formation, and apical-basal patterning defects in the gynoecium. The ETTIN gene encodes a protein with homology to DNA binding proteins which bind to auxin response elements. ETT transcript is expressed throughout stage 1 floral meristems and subsequently resolves to a complex pattern within petal, stamen and carpel primordia. ETT probably functions to impart regional identity in floral meristems that affects perianth organ number spacing, stamen formation, and regional differentiation in stamens and the gynoecium. During stage 5, ETT expression appears in a ring at the top of the floral meristem before morphological appearance of the gynoecium, consistent with the proposal that ETT is involved in prepatterning apical and basal boundaries in the gynoecium primordium. It is a target of the ta-siRNA tasiR-ARF.	O.I.	C.G.	H.G.
36.7	99.7	25.3	At1g68640	843194	PAN (PERIANTHIA)	Encodes bZIP-transcription factor. Mutant plants have extra floral organs.	O.I.	C.G.	H.G.
36.5	99.7	48.2	At3g13960	820609	AtGRF5 (GROWTH-REGULATING FACTOR 5)	Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in root, shoot and flower.	O.I.	C.G.	H.G.
35.6	99.7	19.8	At3g06160	819790	transcriptional factor B3 family protein	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;PO	O.I.	C.G.	H.G.
34.3	99.7	63.6	At1g02800	839385	ATCEL2	Encodes a protein with similarity to endo-1,4-b-glucanases and is a member of Glycoside Hydrolase Family 9. CEL2 is induced by nemotodes and is expressed in syncitia induced by Heterodera schachtii.May be involved in the development and function of syncitia.	O.I.	C.G.	H.G.
33.9	99.7	19.9	At3g58770	825046	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
32.4	99.7	178.7	At1g13710	837932	CYP78A5	member of CYP78A	O.I.	C.G.	H.G.
32.3	99.7	138.3	At5g22880	832352	HTB2	Encodes a histone 2B (H2B) protein. This protein can be ubiquitinated in planta, and this modification depends on the HUB1 and HUB2 E3 ubiquitin ligases.	O.I.	C.G.	H.G.
32.0	99.7	96.2	At4g36180	829775	leucine-rich repeat family protein	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;MPOBFVA	O.I.	C.G.	H.G.
31.3	99.7	152.3	At4g38660	830022	thaumatin, putative	F:molecular_function unknown;P:response to other organism;C:anchored to membrane;PFMBOV	O.I.	C.G.	H.G.
31.0	99.7	25.0	At4g30130	829136	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PMF	O.I.	C.G.	H.G.
30.6	99.7	19.9	At3g57920	824961	SPL15 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 15)	Encodes a putative transcriptional regulator that is involved in the vegetative to reproductive phase transition. Expression is regulated by MIR156b.	O.I.	C.G.	H.G.
30.4	99.7	74.0	At3g23890	821972	TOPII (TOPOISOMERASE II)	Encodes a topoisomerase II that is highly expressed in young seedlings. The protein is localized in the nucleus and gene expression levels are increased in proliferative tissues.	O.I.	C.G.	H.G.
29.5	99.7	24.7	At5g57720	835879	transcriptional factor B3 family protein	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;POFM	O.I.	C.G.	H.G.
29.1	99.7	98.3	At5g44620	834490	CYP706A3	member of CYP706A	O.I.	C.G.	H.G.
29.1	99.7	43.0	At4g29360	829057	glycosyl hydrolase family 17 protein	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to plasma membrane, anchored to membrane;PFOB	O.I.	C.G.	H.G.
28.5	99.7	19.0	At1g70510	843388	KNAT2 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA 2)	A member of class I knotted1-like homeobox gene family (together with KNAT1). Similar to the knotted1 (kn1) homeobox gene of maize. KNAT2 acts synergistically with cytokinins and antagonistically with ethylene based on ectopic expression studies in different mutant backgrounds and hormone treatments. In addition, KNAT2 is negatively regulated by AS and YABBY genes. KNAT2 is strongly expressed in the shoot apex of seedlings, while in mature plants the gene is primarily expressed in flowers and inflorescence stems.	O.I.	C.G.	H.G.
28.2	99.7	296.2	At5g48480	834903	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPO	O.I.	C.G.	H.G.
28.2	99.7	27.5	At1g75090	843846	methyladenine glycosylase family protein	F:DNA-3-methyladenine glycosylase I activity, catalytic activity;P:DNA repair, base-excision repair;C:unknown;BOPAMF	O.I.	C.G.	H.G.
28.1	99.7	85.4	At1g69120	843244	AP1 (APETALA1)	Floral homeotic gene encoding a MADS domain protein homologous to SRF transcription factors. Specifies floral meristem and sepal identity. Required for the transcriptional activation of AGAMOUS. Interacts with LEAFY.Binds to promoter and regulates the expression of flowering time genes SVP, SOC1 and AGL24.	O.I.	C.G.	H.G.
28.1	99.7	17.5	At1g31310	840019	hydroxyproline-rich glycoprotein family protein	F:transcription factor activity;P:regulation of transcription;C:unknown;MPOBFVA	O.I.	C.G.	H.G.
27.3	99.7	42.4	At2g34650	818030	PID (PINOID)	Encodes a protein serine/threonine kinase that may act as a positive regulator of cellular auxin efflux, as a a binary switch for PIN polarity, and as a negative regulator of auxin signaling. Recessive mutants exhibit similar phenotypes as pin-formed mutants in flowers and inflorescence but distinct phenotypes in cotyledons and leaves. Expressed in the vascular tissue proximal to root and shoot meristems, shoot apex, and embryos. Expression is induced by auxin. Overexpression of the gene results in phenotypes in the root and shoot similar to those found in auxin-insensitive mutants. The protein physically interacts with TCH3 (TOUCH3) and PID-BINDING PROTEIN 1 (PBP1), a previously uncharacterized protein containing putative EF-hand calcium-binding motifs. Acts together with ENP (ENHANCER OF PINOID) to instruct precursor cells to elaborate cotyledons in the transition stage embryo. Interacts with PDK1. PID autophosphorylation is required for the ability of PID to phosphorylate an exogenous substrate. PID activation loop is required for PDK1-dependent PID phosphorylation and requires the PIF domain. Negative regulator of root hair growth. PID kinase activity is critical for the inhibition of root hair growth and for maintaining the proper subcellular localization of PID.	O.I.	C.G.	H.G.
26.9	99.7	27.1	At5g11550	831027	binding	F:binding;P:biological_process unknown;C:chloroplast;PMFOBV	O.I.	C.G.	H.G.
26.9	99.7	21.5	At2g16210	816118	transcriptional factor B3 family protein	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P	O.I.	C.G.	H.G.
26.4	99.7	36.7	At1g03170	839563	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
26.1	99.7	371.6	At4g29030	829024	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVA	O.I.	C.G.	H.G.
26.1	99.7	95.7	At4g37750	829931	ANT (AINTEGUMENTA)	ANT is required for control of cell proliferation and encodes a putative transcriptional regulator similar to AP2. Loss of function alleles have reduced fertility, abnormal ovules and abnormal lateral organs. Expressed specifically in the chalaza and in floral organ primordia.	O.I.	C.G.	H.G.
25.5	99.7	115.6	At4g33260	829462	CDC20.2	putative cdc20 protein (CDC20.2)	O.I.	C.G.	H.G.
25.2	99.6	57.8	At2g42200	818820	SPL9 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 9)	Encodes a putative transcriptional regulator that is involved in the vegetative to reproductive phase transition. Expresssion is regulated by MIR156b.	O.I.	C.G.	H.G.
25.2	99.6	44.3	At5g50740	835146	metal ion binding	F:metal ion binding;P:metal ion transport;C:cellular_component unknown;POMBFV	O.I.	C.G.	H.G.
25.0	99.6	16.2	At2g40030	818591	NRPD1B	Encodes the unique largest subunit of nuclear DNA-dependent RNA polymerase V; homologous to budding yeast RPB1 and the E. coli RNA polymerase beta prime subunit. Required for normal RNA-directed DNA methylation at non-CG methylation sites and transgene silencing.	O.I.	C.G.	H.G.
24.8	99.6	11.3	At1g01130	839359	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
24.7	99.6	28.8	At1g67040	843024	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMF	O.I.	C.G.	H.G.
24.5	99.6	110.0	At1g44760	841040	universal stress protein (USP) family protein	F:molecular_function unknown;P:response to stress;C:unknown;PMO	O.I.	C.G.	H.G.
24.4	99.6	51.5	At3g07540	819943	formin homology 2 domain-containing protein / FH2 domain-containing protein	F:actin binding;P:cellular component organization, actin cytoskeleton organization;C:plasma membrane;MOPFBV	O.I.	C.G.	H.G.
24.3	99.6	123.3	At2g33810	817948	SPL3 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 3)	Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It binds DNA, may directly regulate AP1, and is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR.	O.I.	C.G.	H.G.
24.3	99.6	80.7	At3g50070	824169	CYCD3	Encode CYCD3;3, a CYCD3 D-type cyclin. Important for determining cell number in developing lateral organs. Mediating cytokinin effects in apical growth and development.	O.I.	C.G.	H.G.
24.2	99.6	25.2	At1g28360	839732	ERF12 (ERF DOMAIN PROTEIN 12)	encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ERF12). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole.	O.I.	C.G.	H.G.
24.1	99.6	30.4	At3g53310	824499	transcriptional factor B3 family protein	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:endomembrane system;MBOFPV	O.I.	C.G.	H.G.
23.8	99.6	13.1	At4g35900	829744	FD	bZIP protein required for positive regulation of flowering. Mutants are late flowering. FD interacts with FT to promote flowering.Expressed in the shoot apex in floral anlagen, then declines in floral primordia.	O.I.	C.G.	H.G.
23.7	99.6	76.2	At1g57820	842157	VIM1 (VARIANT IN METHYLATION 1)	Encodes a 645-amino acid methylcytosine-binding protein with a PHD domain, two RING finger domains, and an SRA domain that is involved in centromere heterochromatinization. This protein functions as an E3 ubiquitin ligase in vitro. The protein has been shown to bind to methylated cytosines of CG, CNG and CNN motifs via its SRA domain but has a preference for the former. It plays a role in the establishment/maintenance of chromatin structure during cell division and is localized in the nucleus. Plants over-expressing VIM1/ORTH2 show an inhibition in root growth and a delay in flowering. Both over-expression of GFP:ORTH2 and loss of ORTH2/VIM1 lead to decreased levels of DNA methylation. GFP:ORTH2 over-expressers also have increased levels of FWA transcripts.	O.I.	C.G.	H.G.
23.7	99.6	27.2	At3g11000	820271	-	F:unknown;P:unknown;C:endomembrane system;POBFMV	O.I.	C.G.	H.G.
23.5	99.6	53.3	At5g11160	830985	APT5 (Adenine phosphoribosyltransferase 5)	F:adenine phosphoribosyltransferase activity;P:nucleoside metabolic process, adenine salvage, anaerobic respiration, nucleotide metabolic process;C:cellular_component unknown;BOAMFP	O.I.	C.G.	H.G.
23.3	99.6	22.9	At1g16070	838177	AtTLP8 (TUBBY LIKE PROTEIN 8)	Member of TLP family	O.I.	C.G.	H.G.
23.2	99.6	30.7	At1g03710	839427	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POB	O.I.	C.G.	H.G.
23.2	99.6	8.5	At3g15170	820748	CUC1 (CUP-SHAPED COTYLEDON1)	Encodes a transcription factor involved in shoot apical meristem formation and auxin-mediated lateral root formation. The gene is thought not to be involved in stress responses (NaCl, auxins, ethylene). Cuc mutant was first recognized at the heart stage, where embryos lacking two distinct bulges of cotyledonary primordia were observed.	O.I.	C.G.	H.G.
23.1	99.6	18.7	At5g46590	834702	anac096 (Arabidopsis NAC domain containing protein 96)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P	O.I.	C.G.	H.G.
23.0	99.6	20.9	At1g23380	838946	KNAT6	homeodomain transcription factor KNAT6, belonging to class I of KN transcription factor family (which also includes KNAT1 and KNAT2). Expression is increased in as and bop1 leaf mutants.	O.I.	C.G.	H.G.
22.9	99.6	22.4	At3g63440	825519	CKX6 (CYTOKININ OXIDASE/DEHYDROGENASE 6)	This gene used to be called AtCKX7. It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.	O.I.	C.G.	H.G.
22.7	99.6	41.4	At3g61250	825297	AtMYB17 (myb domain protein 17)	Member of the R2R3 factor gene family.	O.I.	C.G.	H.G.
22.5	99.6	244.8	At3g28500	822480	60S acidic ribosomal protein P2 (RPP2C)	F:structural constituent of ribosome;P:translational elongation;C:cytosol, cytosolic ribosome, ribosome, plasma membrane;MFOPAB	O.I.	C.G.	H.G.
22.5	99.6	95.2	At1g02730	839467	ATCSLD5	Encodes a gene similar to cellulose synthase. Knock-out mutant has reduced growth, reduced xylan level and reduced xylan synthase activity in stems.	O.I.	C.G.	H.G.
22.5	99.6	55.5	At5g48360	834889	formin homology 2 domain-containing protein / FH2 domain-containing protein	F:actin binding;P:cellular component organization, actin cytoskeleton organization;C:unknown;MPOFVBA	O.I.	C.G.	H.G.
22.5	99.6	53.4	At2g21050	816640	amino acid permease, putative	F:amino acid transmembrane transporter activity, transporter activity;P:amino acid transport, response to nematode;C:membrane;PFMO	O.I.	C.G.	H.G.
22.1	99.6	125.2	At1g70710	843408	ATGH9B1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B1)	endo-1,4-beta-glucanase. Involved in cell elongation.	O.I.	C.G.	H.G.
22.0	99.6	32.3	At1g04520	839502	PDLP2 (PLASMODESMATA-LOCATED PROTEIN 2)	F:molecular_function unknown;P:N-terminal protein myristoylation, plasmodesmata-mediated intercellular transport;C:plasmodesma;PBFMO	O.I.	C.G.	H.G.
21.7	99.6	91.1	At1g14900	838055	HMGA (HIGH MOBILITY GROUP A)	Encodes a protein belonging to the subgroup of HMGA (high mobility group A) proteins that interact with A/T-rich stretches of DNA.	O.I.	C.G.	H.G.
21.6	99.6	45.6	At5g44560	834483	VPS2.2	F:unknown;P:vesicle-mediated transport;C:ESCRT III complex;MPFOB	O.I.	C.G.	H.G.
21.6	99.6	10.8	At5g65510	836677	AIL7 (AINTEGUMENTA-like 7)	F:transcription factor activity, DNA binding;P:organ morphogenesis, regulation of transcription, DNA-dependent;C:nucleus;POB	O.I.	C.G.	H.G.
21.5	99.6	149.8	At4g02290	828080	AtGH9B13 (Arabidopsis thaliana glycosyl hydrolase 9B13)	F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOF	O.I.	C.G.	H.G.
21.5	99.6	67.7	At5g51560	835230	leucine-rich repeat transmembrane protein kinase, putative	F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
21.4	99.6	39.9	At1g68400	843169	leucine-rich repeat transmembrane protein kinase, putative	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
21.4	99.6	27.6	At5g43500	834370	ATARP9 (ACTIN-RELATED PROTEIN 9)	encodes a protein whose sequence is similar to actin-related proteins (ARPs) in other organisms. Member of nuclear ARP family of genes.	O.I.	C.G.	H.G.
21.3	99.6	20.8	At1g63480	842654	DNA-binding family protein	F:DNA binding;P:biological_process unknown;C:unknown;PMFOBV	O.I.	C.G.	H.G.
21.2	99.6	367.9	At2g28790	817428	osmotin-like protein, putative	F:molecular_function unknown;P:response to other organism;C:plant-type cell wall;PFMBO	O.I.	C.G.	H.G.
21.2	99.6	101.9	At5g10400	830904	histone H3	F:DNA binding;P:nucleosome assembly;C:nucleus, chloroplast, nucleosome;MFPO	O.I.	C.G.	H.G.
21.2	99.6	32.0	At5g56220	835721	nucleoside-triphosphatase/ nucleotide binding	F:nucleoside-triphosphatase activity, nucleotide binding;P:unknown;C:chloroplast;OPMBFVA	O.I.	C.G.	H.G.
21.0	99.6	40.3	At2g27880	817334	AGO5 (ARGONAUTE 5)	F:nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBV	O.I.	C.G.	H.G.
21.0	99.6	14.9	At4g21270	827876	ATK1 (ARABIDOPSIS THALIANA KINESIN 1)	Encodes a kinesin-like motor protein heavy chain. Loss of function mutations have reduced fertility and are defective in spindle formation in male meiosis.	O.I.	C.G.	H.G.
21.0	99.6	7.2	At1g37140	840631	MCT1 (mei2 C-Terminal RRM only like 1)	a member of mei2-like gene family; phylogenetic analysis revealed that it belongs to the fourth clade of mei2-like proteins, with conserved C-terminal RNA recognition motif (RRM) only.	O.I.	C.G.	H.G.
20.9	99.6	37.9	At2g25270	817065	unknown protein	F:unknown;P:unknown;C:plasma membrane;POBM	O.I.	C.G.	H.G.
20.8	99.6	48.2	At1g73590	843693	PIN1 (PIN-FORMED 1)	Encodes an auxin efflux carrier involved in shoot and root development. It is involved in the maintenance of embryonic auxin gradients. Loss of function severely affects organ initiation, pin1 mutants are characterised by an inflorescence meristem that does not initiate any flowers, resulting in the formation of a naked inflorescence stem. PIN1 is involved in the determination of leaf shape by actively promoting development of leaf margin serrations. In roots, the protein mainly resides at the basal end of the vascular cells, but weak signals can be detected in the epidermis and the cortex. Expression levels and polarity of this auxin efflux carrier change during primordium development suggesting that cycles of auxin build-up and depletion accompany, and may direct, different stages of primordium development. PIN1 action on plant development does not strictly require function of PGP1 and PGP19 proteins.	O.I.	C.G.	H.G.
20.7	99.6	237.5	At1g62500	842547	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;MBPOFVA	O.I.	C.G.	H.G.
20.7	99.6	105.8	At3g61310	825303	DNA-binding family protein	F:DNA binding;P:biological_process unknown;C:cellular_component unknown;PMFOB	O.I.	C.G.	H.G.
20.6	99.6	200.9	At1g18250	838405	ATLP-1	encodes a thaumatin-like protein	O.I.	C.G.	H.G.
20.6	99.6	39.0	At5g43020	834317	leucine-rich repeat transmembrane protein kinase, putative	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
20.5	99.6	121.7	At5g16250	831485	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
20.4	99.6	257.2	At1g52030	841632	MBP2 (MYROSINASE-BINDING PROTEIN 2)	Similar to myrosinase binding proteins which may be involved in metabolizing glucosinolates and forming defense compounds to protect against herbivory. Also similar to lectins and other agglutinating factors. Expressed only in flowers.	O.I.	C.G.	H.G.
20.4	99.6	40.3	At3g18960	821429	transcriptional factor B3 family protein	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P	O.I.	C.G.	H.G.
20.3	99.6	82.8	At1g19850	838573	MP (MONOPTEROS)	Encodes a transcription factor (IAA24) mediating embryo axis formation and vascular development. Similar to AUXIN RESPONSIVE FACTOR 1 (ARF1) shown to bind to auxin responsive elements (AREs), and to the maize transcriptional activator VIVIPAROUS 1( VP1). In situ hybridization shows expression in provascular tissue of embryos, the emerging shoot primordia, then is restricted to provascular tissue, and in the root central vascular cylinder.	O.I.	C.G.	H.G.
20.3	99.6	69.5	At4g26760	828783	MAP65-2	F:molecular_function unknown;P:anaphase;C:cortical microtubule, preprophase band, phragmoplast;MOBFPAV	O.I.	C.G.	H.G.
20.3	99.6	50.0	At2g32765	817837	SUMO5 (SMALL UBIQUITINRELATED MODIFIER 5)	Encodes a small ubiquitin-like modifier (SUMO) protein that becomes covalently attached to various intracellular protein targets through an isopeptide bond. SUMOylation typically has a post-translational effect on the behavior of the target protein.	O.I.	C.G.	H.G.
20.1	99.6	30.8	At3g54720	824637	AMP1 (ALTERED MERISTEM PROGRAM 1)	Encodes glutamate carboxypeptidase. Various alleles show-increased cotyledon number and rate of leaf initiation, show transformation of leaves to cotyledons, altered flowering time and photomorphogenesis and an increased level of cytokinin biosynthesis. Involved in ethylene enhanced hypocotyl elongation in the light. Strong genetic interaction between TGH and AMP1.	O.I.	C.G.	H.G.
20.1	99.6	14.2	At4g27590	828869	copper-binding protein-related	F:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:cellular_component unknown;P	O.I.	C.G.	H.G.
20.1	99.6	13.6	At4g31610	829288	REM1 (REPRODUCTIVE MERISTEM 1)	Expressed specifically in reproductive meristems, member of a moderately sized gene family distantly related to known plant DNA binding proteins	O.I.	C.G.	H.G.
20.1	99.6	8.0	At1g80100	844350	AHP6 (ARABIDOPSIS HISTIDINE PHOSPHOTRANSFER PROTEIN 6)	AHP6 lacks the conserved histidine residue (Asn83 in AHP6b), which is required for phosphotransfer, present in the other AHPs. AHP6 does not appear to have phosphotransfer activity. Acts as an inhibitor of cytokinin signaling by interacting with the phosphorelay machinery. Expressed in developing protoxylem and associated pericycle cell files. Negative regulator of cytokinin signaling. Expression is down-regulated by cytokinins. There are two alternatively spliced genes for this locus, AHP6a and AHP6b, differing in the length of the first exon. In ahp6-2 seedlings, only the AHP6a transcript is present. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6).	O.I.	C.G.	H.G.
20.0	99.6	31.0	At1g56020	842053	unknown protein	F:unknown;P:unknown;C:unknown;OMFBPV	O.I.	C.G.	H.G.

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GSM ID	GSM131666
Assay name	ATGE_46_C
GSE experiment	GSE5633: AtGenExpress: Developmental series (shoots and stems)

Microarray experiments to specifically-expressed genes

GSM ID GSM131666 Assay name ATGE_46_C GSE experiment GSE5633: AtGenExpress: Developmental series (shoots and stems)

GSM ID GSM131666

Assay name ATGE_46_C

GSE experiment GSE5633: AtGenExpress: Developmental series (shoots and stems)