Microarray experiments to specifically-expressed genes

GSM ID GSM131644
Assay name ATGE_2_B
GSE experiment GSE5633: AtGenExpress: Developmental series (shoots and stems)

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
508.5100.096.6At4g21760828264BGLU47 (Beta-glucosidase 47)F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFAO.I.C.G.H.G.
369.0100.0115.6At1g69230843254SP1L2 (SPIRAL1-LIKE2)SPIRAL1-LIKE2 belongs to a six-member gene family in Arabidopsis; all members share a high sequence similarity in amino- and carboxy-terminal regions. Regulates cortical microtubule organization. Mutant plants exhibit altered patterns of root and organ growth as a result of defective anisotropic cell expansion.O.I.C.G.H.G.
142.699.984.0At1g35290840418thioesterase family proteinF:hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity;P:biological_process unknown;C:unknown;BOPAO.I.C.G.H.G.
113.199.933.7At3g02500821065unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
105.799.935.3At3g62930825468glutaredoxin family proteinF:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:cellular_component unknown;PMFOBO.I.C.G.H.G.
104.899.979.5At3g44970823632cytochrome P450 family proteinF:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:unknown;C:endomembrane system;MPBFOAVO.I.C.G.H.G.
94.899.941.3At1g16530838223ASL9 (ASYMMETRIC LEAVES 2 LIKE 9)F:unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
89.499.9305.4At4g02290828080AtGH9B13 (Arabidopsis thaliana glycosyl hydrolase 9B13)F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOFO.I.C.G.H.G.
85.099.935.3At3g30340822735nodulin MtN21 family proteinF:unknown;P:unknown;C:endomembrane system, membrane;OBPAMO.I.C.G.H.G.
81.199.9116.1At1g31710840058copper amine oxidase, putativeF:amine oxidase activity, quinone binding, copper ion binding;P:cellular amine metabolic process;C:endomembrane system;FBMOPAO.I.C.G.H.G.
76.299.932.6At3g46880823841unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
72.799.969.7At5g10170830881MIPS3 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 3)myo-inositol-1-phosphate synthase isoform 3.Expressed in leaf, root and silique. Immunolocaliazation experiments with an antibody recognizing MIPS1, MIPS2, and MIPS3 showed endosperm localization.O.I.C.G.H.G.
59.499.881.7At3g03910821072GDH3 (GLUTAMATE DEHYDROGENASE 3)GDH3 encodes a member of the glutamate dehydrogenease family. Its expression is upregulated in response to cytokinin and it may play a role in the control of nitrogen metabolism in leaf development.O.I.C.G.H.G.
58.799.8101.1At3g02885821194GASA5 (GAST1 PROTEIN HOMOLOG 5)F:unknown;P:response to gibberellin stimulus;C:endomembrane system;PO.I.C.G.H.G.
52.199.826.6At1g07880837303ATMPK13member of MAP KinaseO.I.C.G.H.G.
51.699.8179.6At4g28250828940ATEXPB3 (ARABIDOPSIS THALIANA EXPANSIN B3)putative beta-expansin/allergen protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.O.I.C.G.H.G.
47.799.8103.7At1g62560842553FMO GS-OX3 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 3)belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolatesO.I.C.G.H.G.
44.299.885.6At2g39510818536nodulin MtN21 family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;BOPAMO.I.C.G.H.G.
42.299.858.1At4g02850828160phenazine biosynthesis PhzC/PhzF family proteinF:catalytic activity;P:biosynthetic process;C:endomembrane system;BOMFPAO.I.C.G.H.G.
40.899.820.8At4g20230827770terpene synthase/cyclase family proteinF:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;PFOO.I.C.G.H.G.
36.699.7168.7At3g54260824593unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;PMO.I.C.G.H.G.
36.199.765.4At3g03190821227ATGSTF11 (GLUTATHIONE S-TRANSFERASE F11)Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).O.I.C.G.H.G.
34.799.730.2At3g52900824456unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBAFO.I.C.G.H.G.
33.899.768.5At2g36570818230leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;PMOBFVAO.I.C.G.H.G.
33.799.7123.2At4g11190826721disease resistance-responsive family protein / dirigent family proteinF:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;PO.I.C.G.H.G.
33.099.7139.2At1g19600838547pfkB-type carbohydrate kinase family proteinF:kinase activity;P:D-ribose catabolic process;C:cellular_component unknown;BOMPAFO.I.C.G.H.G.
32.999.761.5At4g01390828075-F:molecular_function unknown;P:biological_process unknown;C:unknown;POO.I.C.G.H.G.
32.999.716.4At5g01840831813OFP1 (OVATE FAMILY PROTEIN 1)Encodes a member of the plant specific ovate protein family. Members of this family have been shown to bind to KNOX and BELL- like TALE class homeodomain proteins. This interaction may mediate relocalization of the TALE homeodomain from the nucleus to the cytoplasm. Functions as a transcriptional repressor that suppresses cell elongation.O.I.C.G.H.G.
29.699.713.6At1g30515839931unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
28.899.768.2At3g51720824335unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBPFAVO.I.C.G.H.G.
28.399.7153.5At3g45160823652unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
28.099.7188.1At5g04950830377NAS1 (NICOTIANAMINE SYNTHASE 1)Encodes a nicotianamide synthase.O.I.C.G.H.G.
27.599.733.2At2g31160817672LSH3 (LIGHT SENSITIVE HYPOCOTYLS 3)F:molecular_function unknown;P:biological_process unknown;C:unknown;PMO.I.C.G.H.G.
27.399.7122.4At2g22330816765CYP79B3Encodes a cytochrome P450. Involved in tryptophan metabolism. Converts Trp to indole-3-acetaldoxime (IAOx), a precursor to IAA and indole glucosinolates.O.I.C.G.H.G.
26.799.777.1At1g56430842096NAS4 (NICOTIANAMINE SYNTHASE 4)F:nicotianamine synthase activity;P:nicotianamine biosynthetic process;C:cellular_component unknown;PFABOO.I.C.G.H.G.
26.699.738.9At2g361203768574DOT1 (DEFECTIVELY ORGANIZED TRIBUTARIES 1)Encodes a glycine rich protein that is involved in leaf vascular patterning. dot1 mutants have an aberrant open-class venation pattern in leaves and cotyledons, as well as several other leaf development defects.O.I.C.G.H.G.
24.899.697.8At1g78490844185CYP708A3member of CYP708AO.I.C.G.H.G.
24.899.630.7At5g51350835209leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;PMOBFAVO.I.C.G.H.G.
24.799.642.6At1g01190839233CYP78A8member of CYP78AO.I.C.G.H.G.
24.599.617.0At5g23400832405disease resistance family protein / LRR family proteinF:protein binding;P:signal transduction, defense response;C:cell wall;PMOBFAVO.I.C.G.H.G.
24.299.620.0At5g61290836250flavin-containing monooxygenase family protein / FMO family proteinF:NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity;P:unknown;C:cellular_component unknown;BOMFPAO.I.C.G.H.G.
23.499.622.6At5g48800834938phototropic-responsive NPH3 family proteinF:protein binding, signal transducer activity;P:response to light stimulus;C:plasma membrane;PO.I.C.G.H.G.
22.799.632.4At3g25560822143NIK2 (NSP-INTERACTING KINASE 2)F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
22.799.630.9At2g40480818643unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPBFVO.I.C.G.H.G.
22.699.627.1At5g26670832722pectinacetylesterase, putativeF:carboxylesterase activity;P:unknown;C:endomembrane system;PMOBO.I.C.G.H.G.
22.299.629.3At2g41370818735BOP2 (BLADE ON PETIOLE2)Encodes a cytoplasmic and nuclear-localized NPR1 like protein with BTB/POZ domain and ankyrin repeats. Interacts with BOP1 and appears to be genetically redundant with BOP1.bop1/bop2 double mutants have longer leaves, often with leaflets on the petiole, asymmetric flowers with extra organs and no nectaries. Also defective in floral organ abs cission.O.I.C.G.H.G.
21.999.675.5At3g24770822075CLE41 (CLAVATA3/ESR-RELATED 41)Belongs to a large gene family, called CLE for CLAVATA3/ESR-related, encoding small peptides with conserved carboxyl termini. The C-terminal 12 amino acid sequence of CLE41 is identical to that of a dodeca peptide (TDIF, tracheary element differentiation inhibitory factor) isolated from Arabidopsis and functions as a suppressor of plant stem cell differentiation. TDIF sequence is also identical to the C-terminal 12 amino acids of CLE44 (At4g13195).O.I.C.G.H.G.
21.299.649.1At5g19600832080SULTR3Encodes sulfate transporter Sultr3;5.O.I.C.G.H.G.
20.799.6135.8At4g29080829029PAP2 (PHYTOCHROME-ASSOCIATED PROTEIN 2)phytochrome-associated protein 2 (PAP2)O.I.C.G.H.G.
20.499.649.0At2g24762817013AtGDU4 (Arabidopsis thaliana GLUTAMINE DUMPER 4)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
20.399.662.4At5g60890836210MYB34 (MYB DOMAIN PROTEIN 34)Myb-like transcription factor that modulates expression of ASA1, a key point of control in the tryptophan pathway; mutant has deregulated expression of ASA1 in dominant allele. Loss of function allele suggests ATR1 also functions at a control point for regulating indole glucosinolate homeostasis.O.I.C.G.H.G.
20.299.618.0At1g10460837586GLP7 (GERMIN-LIKE PROTEIN 7)germin-like protein (GLP7)O.I.C.G.H.G.
20.099.633.0At5g65970836727MLO10 (MILDEW RESISTANCE LOCUS O 10)A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO10 belongs to the clade III, with AtMLO5, AtMLO7, AtMLO8, and AtMLO9. The gene is expressed in root and cotyledon vascular system, in root-shoot junction and lateral root primordia and in developing siliques, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(sO.I.C.G.H.G.
19.799.624.7At1g80690844408unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFO.I.C.G.H.G.
19.499.670.1At5g44400834466FAD-binding domain-containing proteinF:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:cell wall;BFOPAMO.I.C.G.H.G.
19.399.629.4At4g20430827791subtilase family proteinF:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system, cell wall, membrane;BPOFAMO.I.C.G.H.G.
18.999.575.7At5g61420836263MYB28 (myb domain protein 28)Encodes a nuclear localized member of the MYB transcription factor family. Involved in positive regulation of aliphatic glucosinolate biosynthesis.Expression is induced by touch, wounding and glucose.O.I.C.G.H.G.
18.799.524.3At4g22160828305unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
18.699.558.4At2g34490818012CYP710A2 (cytochrome P450, family 710, subfamily A, polypeptide 2)Encodes a protein with C22-sterol desaturase activity. The enzyme was shown to catalyze the conversion of both 24-epi-campesterol and β-sitosterol to brassicasterol and stigmasterol, respectively, in the presence of NADPH.O.I.C.G.H.G.
18.599.578.7At4g08150826364KNAT1 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA)A member of class I knotted1-like homeobox gene family (together with KNAT2). Similar to the knotted1 (kn1) homeobox gene of maize. Normally expressed in the peripheral and rib zone of shoot apical meristem but not in the leaf primordia. It is also expressed in the fourth floral whorl, in the region that would become style, particularly in the cell surrounding the transmitting tissue. No expression was detected in the first three floral whorls. Expression is repressed by auxin and AS1 which results in the promotion of leaf fate.O.I.C.G.H.G.
18.299.5168.1At4g39950830154CYP79B2Belongs to cytochrome P450 and is involved in tryptophan metabolism. Converts Trp to indo-3-acetaldoxime (IAOx), a precursor to IAA and indole glucosinolates.O.I.C.G.H.G.
18.299.512.9At1g03020839505glutaredoxin family proteinF:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:cellular_component unknown;PMFOBO.I.C.G.H.G.
18.199.5204.4At3g44990823634XTR8 (XYLOGLUCAN ENDO-TRANSGLYCOSYLASE-RELATED 8)xyloglucan endo-transglycosylaseO.I.C.G.H.G.
18.099.590.6At5g10180830882AST68Encodes a low-affinity sulfate transporter expressed in the root cap and central cylinder, where it is induced by sulfur starvation. Expression in the shoot vascular system is not induced by sulfur starvation.O.I.C.G.H.G.
18.099.553.0At1g59740842267proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport, response to nematode;C:plasma membrane, membrane;BPMOFO.I.C.G.H.G.
17.799.519.7At3g63440825519CKX6 (CYTOKININ OXIDASE/DEHYDROGENASE 6)This gene used to be called AtCKX7. It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.O.I.C.G.H.G.
17.699.585.6At1g78060844141glycosyl hydrolase family 3 proteinF:hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:apoplast, cell wall, chloroplast, plant-type cell wall;BOFPAMO.I.C.G.H.G.
17.599.535.7At3g02120821311hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:response to cyclopentenone;C:cellular_component unknown;PO.I.C.G.H.G.
17.499.524.0At3g07340819922basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus, chloroplast;POMFBO.I.C.G.H.G.
17.399.546.5At4g29720829093ATPAO5 (Polyamine oxidase 5)F:electron carrier activity, amine oxidase activity, oxidoreductase activity;P:unknown;C:endomembrane system;MBFOPO.I.C.G.H.G.
17.399.518.1At2g21830816719DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;PMOO.I.C.G.H.G.
16.999.543.1At2g18140816327peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:cell wall;PFOBMO.I.C.G.H.G.
16.999.524.3At1g28390839736protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
16.599.521.6At2g28250817371NCRKF:kinase activity;P:xylem histogenesis;C:endosome, endomembrane system;MPOBFVAO.I.C.G.H.G.
16.499.5317.9At3g16530820901legume lectin family proteinLectin like protein whose expression is induced upon treatment with chitin oligomers.O.I.C.G.H.G.
16.099.530.1At5g58300835942leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;PMOBFVAO.I.C.G.H.G.
16.099.512.7At3g13784820590AtcwINV5 (Arabidopsis thaliana cell wall invertase 5)F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:sucrose catabolic process, using beta-fructofuranosidase, carbohydrate metabolic process;C:endomembrane system;BPFOMAO.I.C.G.H.G.
15.699.512.8At5g04330830312cytochrome P450, putative / ferulate-5-hydroxylase, putativeF:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:unknown;C:endomembrane system;MPFBOAVO.I.C.G.H.G.
15.299.415.8At1g33440840237proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport;C:plasma membrane, membrane;BPMOFO.I.C.G.H.G.
14.999.457.9At2g33050817867AtRLP26 (Receptor Like Protein 26)F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAVO.I.C.G.H.G.
14.399.416.4At3g47570823911leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.C.G.H.G.
14.299.452.7At4g34160829564CYCD3encodes a cyclin D-type protein involved in the switch from cell proliferation to the final stages of differentiation. The gene is transcriptionally regulated by cytokinin and brassinosteroid. Protein interacts with cyclin-dependent kinase inhibitor ICK1.O.I.C.G.H.G.
14.099.423.8At1g35260840415MLP165 (MLP-LIKE PROTEIN 165)F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;PO.I.C.G.H.G.
14.099.412.2At5g03270831890unknown proteinF:molecular_function unknown;P:lysine biosynthetic process via diaminopimelate;C:unknown;BOPFMAO.I.C.G.H.G.
13.699.431.3At5g05160830398leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:cell wall, plasma membrane;PMOBFVAO.I.C.G.H.G.
13.599.4177.7At5g05960830481protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
13.599.449.3At1g62800842579ASP4 (ASPARTATE AMINOTRANSFERASE 4)Encodes aspartate aminotransferase (Asp4).O.I.C.G.H.G.
13.499.422.9At2g24190816953short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAO.I.C.G.H.G.
13.299.489.1At2g31790817736UDP-glucoronosyl/UDP-glucosyl transferase family proteinF:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOFO.I.C.G.H.G.
13.299.451.1At5g37690833748GDSL-motif lipase/hydrolase family proteinF:lipase activity, hydrolase activity, acting on ester bonds;P:lipid metabolic process;C:endomembrane system;PBFOMO.I.C.G.H.G.
13.299.419.4At4g00230827949XSP1 (xylem serine peptidase 1)F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:cell wall, plant-type cell wall;BPOFMAO.I.C.G.H.G.
13.199.415.5At4g34560829608unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
12.999.382.2At2g13820815865protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:anchored to plasma membrane, plasma membrane;PFO.I.C.G.H.G.
12.999.325.4At3g23295--O.I.C.G.H.G.
12.899.326.5At3g19370821471-F:unknown;P:unknown;C:plasma membrane;MOBFPAVO.I.C.G.H.G.
12.799.368.7At1g14210837982ribonuclease T2 family proteinF:ribonuclease T2 activity, endoribonuclease activity, RNA binding;P:response to salt stress;C:endomembrane system;PFMBOVO.I.C.G.H.G.
12.699.3360.2At1g28290839723AGP31 (arabinogalactan-protein 31)Encodes an atypical arabinogalactan protein that is localized to the plasma membrange. AGP31 is highly expressed in flowers and vascular tissue and is repressed by jasmonic acid. AGP31 may play a role in vascular tissue function during defense and development.O.I.C.G.H.G.
12.699.325.7At5g07690830662ATMYB29 (ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 29)Encodes a putative transcription factor (MYB29).O.I.C.G.H.G.
12.699.316.5At4g36830829836GNS1/SUR4 membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:integral to membrane;PFMOVO.I.C.G.H.G.
12.599.3187.6At4g24780828580pectate lyase family proteinF:lyase activity, pectate lyase activity;P:biological_process unknown;C:membrane;PBFOO.I.C.G.H.G.



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