Microarray experiments to specifically-expressed genes

GSM ID GSM131633
Assay name ATGE_59_A
GSE experiment GSE5632: AtGenExpress: Developmental series (flowers and pollen)

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
61.699.861.6At2g12480815721serine carboxypeptidase S10 family proteinF:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOBO.I.C.G.H.G.
50.399.839.6At3g11000820271-F:unknown;P:unknown;C:endomembrane system;POBFMVO.I.C.G.H.G.
39.999.823.9At5g22980832362scpl47 (serine carboxypeptidase-like 47)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOBO.I.C.G.H.G.
37.699.774.8At1g02190839541CER1 protein, putativeF:oxidoreductase activity, iron ion binding, catalytic activity;P:oxidation reduction, fatty acid biosynthetic process;C:endoplasmic reticulum;BOPFMVO.I.C.G.H.G.
36.599.799.0At1g78960844236ATLUP2Encodes a multifunctional 2-3-oxidosqualene (OS)-triterpene cyclase that can cyclize OS into lupeol, alpha- and beta-amyrin.O.I.C.G.H.G.
36.299.721.4At4g00870827990basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFOO.I.C.G.H.G.
34.899.793.2At1g72290843561trypsin and protease inhibitor family protein / Kunitz family proteinF:endopeptidase inhibitor activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
28.799.723.9At5g03390831852unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
27.399.7322.3At1g72260843558THI2.1 (THIONIN 2.1)Encodes a thionin which is a cysteine rich protein having antimicrobial properties. Thi2.1 is expressed in response to a variety of pathogens and induced by ethylene and jasmonic acid. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.O.I.C.G.H.G.
26.599.717.8At4g18290827555KAT2 (POTASSIUM CHANNEL IN ARABIDOPSIS THALIANA 2)One of the four members of the Shaker family encoding guard cell potassium inward channels. Critical to stomatal opening induced by blue light. Critical to circadian rhythm of stomatal opening. Involved in plant development in response to high light intensity. Under high light intensity, the mutant plant produced less biomass compared to the wild type.O.I.C.G.H.G.
25.099.659.3At1g24070839019ATCSLA10encodes a gene similar to cellulose synthaseO.I.C.G.H.G.
24.799.686.3At1g24260839040SEP3 (SEPALLATA3)Member of the MADs box transcription factor family. SEP3 is redundant with SEP1 and 2. Flowers of SEP1/2/3 triple mutants show a conversion of petals and stamens to sepals.SEP3 forms heterotetrameric complexes with other MADS box family members and binds to the CArG box motif.O.I.C.G.H.G.
24.699.621.3At5g35670833540iqd33 (IQ-domain 33)F:calmodulin binding;P:biological_process unknown;C:unknown;PBMOFO.I.C.G.H.G.
24.399.691.9At1g65370842848meprin and TRAF homology domain-containing protein / MATH domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
23.999.623.2At5g15720831427GLIP7Contains lipase signature motif and GDSL domain.O.I.C.G.H.G.
23.599.624.7At1g60060842300unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPFMBO.I.C.G.H.G.
22.599.621.7At3g04960819656-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVO.I.C.G.H.G.
21.999.661.1At1g54020841840myrosinase-associated protein, putativeF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:vacuole;PBMO.I.C.G.H.G.
21.899.654.3At5g21150832241PAZ domain-containing protein / piwi domain-containing proteinF:nucleic acid binding;P:unknown;C:cellular_component unknown;MPFOO.I.C.G.H.G.
20.399.638.2At2g21220816659auxin-responsive protein, putativeF:calmodulin binding;P:response to auxin stimulus;C:unknown;POO.I.C.G.H.G.
20.199.648.8At3g12000820374S-locus related protein SLR1, putative (S1)F:sugar binding;P:recognition of pollen;C:endomembrane system;POO.I.C.G.H.G.
19.699.6323.9At2g20870816620cell wall protein precursor, putativeF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPMFO.I.C.G.H.G.
19.099.514.5At5g11360831007-F:unknown;P:unknown;C:cellular_component unknown;PO.I.C.G.H.G.
18.999.540.1At5g43270834345SPL2 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2)member of the SPL (squamosa-promoter binding protein-like) gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. The genes are characterized by the presence of the SBP-box, which encodes a protein domain, theO.I.C.G.H.G.
18.699.5222.8At3g2850082248060S acidic ribosomal protein P2 (RPP2C)F:structural constituent of ribosome;P:translational elongation;C:cytosol, cytosolic ribosome, ribosome, plasma membrane;MFOPABO.I.C.G.H.G.
18.599.578.5At5g44620834490CYP706A3member of CYP706AO.I.C.G.H.G.
18.499.541.8At3g10190820181calmodulin, putativeF:calcium ion binding;P:biological_process unknown;C:plasma membrane;MPFOBO.I.C.G.H.G.
17.999.5127.4At5g47500834800pectinesterase family proteinF:pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO.I.C.G.H.G.
17.899.546.9At4g21590828245ENDO3 (endonuclease 3)Encodes a putative endonuclease but no demonstrable endonuclease activity, either towards single stranded DNA or mismatches, has been seen in vitro. Activated by AGAMOUS in a cal-1, ap1-1 background. Expressed in the floral meristem and during stamen development.O.I.C.G.H.G.
17.499.5237.6At1g52030841632MBP2 (MYROSINASE-BINDING PROTEIN 2)Similar to myrosinase binding proteins which may be involved in metabolizing glucosinolates and forming defense compounds to protect against herbivory. Also similar to lectins and other agglutinating factors. Expressed only in flowers.O.I.C.G.H.G.
17.399.513.2At1g23420838950INO (INNER NO OUTER)Essential for formation and asymmetric growth of the ovule outer integument. Member of the YABBY protein family of putative transcription factors that contain apparent Cys(2)-Cys(2) zinc-finger domains and regions of similarity to the high mobility group (HMG) transcription factors. INO may be required for polarity determination in the central part of the ovule.O.I.C.G.H.G.
17.299.534.1At3g60160825186ATMRP9member of MRP subfamilyO.I.C.G.H.G.
16.899.539.2At1g25330839117basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFO.I.C.G.H.G.
16.799.535.9At2g27880817334AGO5 (ARGONAUTE 5)F:nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBVO.I.C.G.H.G.
16.599.514.8At5g18000831667transcriptional factor B3 family proteinF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;POMFO.I.C.G.H.G.
16.299.523.7At1g27360839625squamosa promoter-binding protein-like 11 (SPL11)F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PO.I.C.G.H.G.
16.099.586.7At3g25050822096XTH3 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 3)encodes a xyloglucan endotransglucosylase/hydrolase. Higher expression in flowers and in response to IAA treatment.O.I.C.G.H.G.
16.099.564.5At1g69120843244AP1 (APETALA1)Floral homeotic gene encoding a MADS domain protein homologous to SRF transcription factors. Specifies floral meristem and sepal identity. Required for the transcriptional activation of AGAMOUS. Interacts with LEAFY.Binds to promoter and regulates the expression of flowering time genes SVP, SOC1 and AGL24.O.I.C.G.H.G.
16.099.546.0At2g42200818820SPL9 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 9)Encodes a putative transcriptional regulator that is involved in the vegetative to reproductive phase transition. Expresssion is regulated by MIR156b.O.I.C.G.H.G.
15.899.538.3At1g51460841571ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMFAPVO.I.C.G.H.G.
15.699.545.1At2g21650816703MEE3 (MATERNAL EFFECT EMBRYO ARREST 3)F:transcription factor activity, DNA binding;P:embryonic development ending in seed dormancy, regulation of transcription, DNA-dependent;C:unknown;PMOO.I.C.G.H.G.
15.599.559.7At5g20740832197invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
15.399.459.6At3g18850821418LPAT5F:acyltransferase activity;P:metabolic process;C:unknown;MBOFPVO.I.C.G.H.G.
15.299.4165.0At1g72970843628HTH (HOTHEAD)Originally identified as a mutation that causes floral organs to fuse together. About 10-20% of mutants also have defects in ovules. Mutants have reduced fertility most likely as because of fusions that pistil emergence. The protein has similarity to the mandelonitrile lyase family of FAD containing oxidoreductases and is predicted to be secreted (SignalP).It is expressed in all tissue layers of roots, inflorescences, stems, leaves, and flowers and is also expressed in siliques. Expression is highest in inflorescence and flower tissue.Transmission of mutant alleles to the progeny shows non mendelian segregation- a percentage of mutant alleles revert back to a previous parental (e.g. grandparental) wild type allele. It has been suggested that an RNA template driven or other extra-DNA genomic mechanism may be responsible for the non-mendelian inheritance of HTH. Reversion events in alleles at other loci have also been observed to occur in plants with an hth mutant background indicating a genome wide effect.O.I.C.G.H.G.
15.099.4174.4At5g48485834904DIR1 (DEFECTIVE IN INDUCED RESISTANCE 1)encodes a putative apoplastic lipid transfer protein that is involved in systemic acquired resistance. Mutants in this gene exhibit wild-type local resistance to avirulent and virulent Pseudomonas syringae, but pathogenesis-related gene expression is abolished in uninoculated distant leaves and fail to develop SAR to virulent Pseudomonas or Peronospora parasitica.O.I.C.G.H.G.
14.999.4258.3At1g66850843003protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
14.899.492.8At1g75910843924EXL4member of Lipase proteinsO.I.C.G.H.G.
14.799.441.1At3g03450821251RGL2 (RGA-LIKE 2)Encodes a DELLA protein, a member of the GRAS superfamily of putative transcription factors. DELLA proteins restrain the cell proliferation and expansion that drives plant growth. Negative regulator of the response to GA in controlling seed germination. GA triggers the degradation of RGL2 protein in a process blocked by both proteasome inhibitors and serine/threonine phosphatase inhibitors. The protein undergoes degradation in response to GA via the 26S proteasome. RGL2 may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Rapidly degraded in response to GA. Regulates GA-promoted seed germination. Involved in flower and fruit development.O.I.C.G.H.G.
14.699.433.2At3g06220819796DNA binding / transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;PO.I.C.G.H.G.
14.699.417.3At2g35310818098transcriptional factor B3 family proteinF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;PO.I.C.G.H.G.
14.599.457.2At4g21900828279antiporter/ drug transporter/ transporterF:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;MPOO.I.C.G.H.G.
14.599.415.9At3g55710824737UDP-glucoronosyl/UDP-glucosyl transferase family proteinF:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:endomembrane system;PMVBOFO.I.C.G.H.G.
14.399.4122.3At4g02290828080AtGH9B13 (Arabidopsis thaliana glycosyl hydrolase 9B13)F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOFO.I.C.G.H.G.
14.099.432.4At2g42800818880AtRLP29 (Receptor Like Protein 29)F:protein binding;P:unknown;C:anchored to membrane, plant-type cell wall;PMOBFAO.I.C.G.H.G.
13.699.425.3At5g22940832358F8H (FRA8 HOMOLOG)Homolog of FRA8 (AT2G28110), a member of a member of glycosyltransferase family 47; exhibits high sequence similarity to tobacco (Nicotiana plumbaginifolia) pectin glucuronyltransferase.O.I.C.G.H.G.
13.599.426.9At4g21480828233carbohydrate transmembrane transporter/ sugar:hydrogen symporterF:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOAVO.I.C.G.H.G.
13.599.423.8At4g16447827342unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
13.599.422.8At1g16705838241p300/CBP acetyltransferase-related protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
13.499.450.3At4g16590827360ATCSLA01encodes a gene similar to cellulose synthaseO.I.C.G.H.G.
13.499.420.5At4g327103770575ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinaseF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVAO.I.C.G.H.G.
13.299.443.6At5g37020833672ARF8 (AUXIN RESPONSE FACTOR 8)Encodes a member of the auxin response factor family. Mediates auxin response via expression of auxin regulated genes. Acts redundantly with ARF6 to control stamen elongation and flower maturation. Expression of ARF8 is controlled by miR167.O.I.C.G.H.G.
13.099.4239.6At4g12960826908gamma interferon responsive lysosomal thiol reductase family protein / GILT family proteinF:catalytic activity;P:biological_process unknown;C:endomembrane system;MPOFO.I.C.G.H.G.
13.099.418.8At5g04660830343CYP77A4encodes a protein with cytochrome P450 domainO.I.C.G.H.G.
12.999.3180.4At5g51750835249ATSBT1.3 (ARABIDOPSIS THALIANA SUBTILASE 1.3)F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast;BPFOAMO.I.C.G.H.G.
12.999.339.0At5g15800831436SEP1 (SEPALLATA1)Encodes a MADS box transcription factor involved flower and ovule development. Functionally redundant with SEP2 and SEP3.O.I.C.G.H.G.
12.999.318.9At5g02190831845PCS1 (PROMOTION OF CELL SURVIVAL 1)encodes an aspartic protease, has an important role in determining cell fate during embryonic development and in reproduction processes. The loss-of-function mutation of PCS1 causes degeneration of both male and female gametophytes and excessive cell death of developing embryos during torpedo stage.O.I.C.G.H.G.
12.799.338.7At1g02800839385ATCEL2Encodes a protein with similarity to endo-1,4-b-glucanases and is a member of Glycoside Hydrolase Family 9. CEL2 is induced by nemotodes and is expressed in syncitia induced by Heterodera schachtii.May be involved in the development and function of syncitia.O.I.C.G.H.G.
12.699.326.9At3g26140822214glycosyl hydrolase family 5 protein / cellulase family proteinF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cellular_component unknown;BFPOAO.I.C.G.H.G.
12.599.35.1At3g45940823737alpha-xylosidase, putativeF:hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:endomembrane system;BMFOPAVO.I.C.G.H.G.
12.499.38.8At2g26520817193unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO.I.C.G.H.G.
12.299.341.2At2g36570818230leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;PMOBFVAO.I.C.G.H.G.
12.099.392.0At1g70710843408ATGH9B1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B1)endo-1,4-beta-glucanase. Involved in cell elongation.O.I.C.G.H.G.
11.999.333.1At1g20120838601family II extracellular lipase, putativeF:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMAVO.I.C.G.H.G.
11.899.3107.2At4g15210827185BAM5 (BETA-AMYLASE 5)cytosolic beta-amylase expressed in rosette leaves and inducible by sugar. RAM1 mutants have reduced beta amylase in leaves and stems.O.I.C.G.H.G.
11.799.337.9At1g66350842953RGL1 (RGA-LIKE 1)Negative regulator of GA responses, member of GRAS family of transcription factors. Also belongs to the DELLA proteins that restrain the cell proliferation and expansion that drives plant growth. RGL1 may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Rapidly degraded in response to GA. Involved in flower and fruit development.O.I.C.G.H.G.
11.799.328.6At5g60140836136transcriptional factor B3 family proteinF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;BOMFPVAO.I.C.G.H.G.
11.699.3210.6At5g07550830648GRP19 (GLYCINE-RICH PROTEIN 19)member of Oleosin-like protein familyO.I.C.G.H.G.
11.699.319.5At1g25510839137aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PMFOO.I.C.G.H.G.
11.499.321.6At1g03710839427-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBO.I.C.G.H.G.
11.299.2186.7At5g48480834903unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOO.I.C.G.H.G.
11.299.2117.0At4g34980829650SLP2Serine protease similar to subtilisin.O.I.C.G.H.G. shock protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPFAMO.I.C.G.H.G. a protein with similarity to WUS type homeodomain protein. Required for meristem growth and development and acts through positive regulation of WUS. Loss of function phenotypes include embryo lethality, hyponastic cotyledons, reduced root development and smaller meristems. Phenotypes can be rescued by addition of sucrose in the growth media.O.I.C.G.H.G. (embryo defective 3009)F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:embryonic development ending in seed dormancy;C:cellular_component unknown;PFBOO.I.C.G.H.G. synthase/cyclase family proteinEncodes a sesquiterpene synthase involved in generating all of the group B sesquiterpenes found in the Arabidopsis floral volatile blend. Strongly expressed in intrafloral nectaries.O.I.C.G.H.G. factor B3 family proteinF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;PO.I.C.G.H.G. (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 3)Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It binds DNA, may directly regulate AP1, and is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR.O.I.C.G.H.G.
10.899.2120.6At2g28470817395BGAL8 (beta-galactosidase 8)putative beta-galactosidase (BGAL8 gene)O.I.C.G.H.G.
10.899.250.8At4g26760828783MAP65-2F:molecular_function unknown;P:anaphase;C:cortical microtubule, preprophase band, phragmoplast;MOBFPAVO.I.C.G.H.G.
10.899.28.6At1g51670841592unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
10.699.269.8At3g02310821151SEP2 (SEPALLATA 2)MADS-box protein, binds K domain of AG in vivoO.I.C.G.H.G.
10.699.245.6At1g30330839913ARF6 (AUXIN RESPONSE FACTOR 6)Encodes a member of the auxin response factor family. Mediates auxin response via expression of auxin regulated genes. Acts redundantly with ARF8 to control stamen elongation and flower maturation. Expression of ARF6 is controlled by miR167.O.I.C.G.H.G.
10.699.235.1At3g58780825047SHP1 (SHATTERPROOF 1)One of two genes (SHP1 and SHP2) that are required for fruit dehiscence. The two genes control dehiscence zone differentiation and promote the lignification of adjacent cells.O.I.C.G.H.G.
10.699.232.9At1g65900842902unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPAOO.I.C.G.H.G.
10.599.2129.5At5g08000830694E13L3 (GLUCAN ENDO-1,3-BETA-GLUCOSIDASE-LIKE PROTEIN 3)Encodes a member of the X8-GPI family of proteins. It localizes to the plasmodesmata and binds callose.O.I.C.G.H.G.
10.599.210.8At3g06160819790transcriptional factor B3 family proteinF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;POO.I.C.G.H.G.
10.599.210.2At3g25130822104unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;OMFBPVAO.I.C.G.H.G.
10.399.284.3At1g78210844157hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:biological_process unknown;C:cellular_component unknown;BOPMFAO.I.C.G.H.G. (SMALL UBIQUITINRELATED MODIFIER 5)Encodes a small ubiquitin-like modifier (SUMO) protein that becomes covalently attached to various intracellular protein targets through an isopeptide bond. SUMOylation typically has a post-translational effect on the behavior of the target protein.O.I.C.G.H.G. factorF:transcription factor activity;P:regulation of transcription;C:vacuole;PBOMFO.I.C.G.H.G.

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