Microarray experiments to specifically-expressed genes

GSM ID GSM131622
Assay name ATGE_55_B
GSE experiment GSE5632: AtGenExpress: Developmental series (flowers and pollen)

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
133.899.999.7At1g13140837871CYP86C3member of CYP86CO.I.C.G.H.G.
105.299.9108.7At1g61070842399LCR66 (LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 66)Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.O.I.C.G.H.G.
96.199.964.8At1g74540843795CYP98A8member of CYP98AO.I.C.G.H.G.
95.599.970.4At3g52160824381KCS15 (3-KETOACYL-COA SYNTHASE 15)Encodes KCS15, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).O.I.C.G.H.G.
84.599.936.8At1g71160843456KCS7 (3-KETOACYL-COA SYNTHASE 7)Encodes KCS7, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).O.I.C.G.H.G.
78.899.9182.3At1g33430840236galactosyltransferase family proteinF:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:pollen exine formation;C:endomembrane system, membrane;MPOO.I.C.G.H.G.
76.599.9239.9At1g68875843220unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
76.199.983.9At1g20120838601family II extracellular lipase, putativeF:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMAVO.I.C.G.H.G.
75.499.965.0At1g23570838967unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
70.199.9181.5At3g25050822096XTH3 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 3)encodes a xyloglucan endotransglucosylase/hydrolase. Higher expression in flowers and in response to IAA treatment.O.I.C.G.H.G.
68.599.959.2At5g13380831179auxin-responsive GH3 family proteinF:unknown;P:response to auxin stimulus;C:cellular_component unknown;OBPMFO.I.C.G.H.G.
66.199.837.2At3g04960819656-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVO.I.C.G.H.G.
65.399.8242.3At1g75940843927ATA27encodes a protein similar to the BGL4 beta-glucosidase from Brassica napus. The ATA27 protein is predicted to have an ER retention signal and an acidic isoelectric point, suggesting that it may be localized to the ER lumen.O.I.C.G.H.G.
64.299.8535.9At1g66850843003protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
64.299.871.5At4g14815827138protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:anchored to membrane;PO.I.C.G.H.G.
63.899.851.9At2g19070816424SHT (SPERMIDINE HYDROXYCINNAMOYL TRANSFERASE)encodes a protein whose sequence is similar to anthranilate N-hydroxycinnamoyl/benzoyltransferase from Dianthus caryophyllus (gi:2239091)O.I.C.G.H.G.
62.199.831.7At1g75790843912sks18 (SKU5 Similar 18)F:pectinesterase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOAO.I.C.G.H.G.
61.999.8102.9At4g28395828956ATA7related to lipid transfer proteinsO.I.C.G.H.G.
60.999.883.3At5g16960831559NADP-dependent oxidoreductase, putativeF:oxidoreductase activity, binding, zinc ion binding, catalytic activity;P:response to oxidative stress;C:unknown;BOMFPAO.I.C.G.H.G.
60.699.877.5At5g48210834874unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
59.399.882.7At1g61110842404anac025 (Arabidopsis NAC domain containing protein 25)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;POO.I.C.G.H.G.
56.099.835.7At1g13150837873CYP86C4member of CYP86CO.I.C.G.H.G.
55.199.8179.4At1g75910843924EXL4member of Lipase proteinsO.I.C.G.H.G.
54.999.850.4At5g65205836644short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAVO.I.C.G.H.G.
54.999.821.9At4g29250829046transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO.I.C.G.H.G.
52.999.8156.4At1g67990843127TSM1Encodes a tapetum-specific O-methyltransferase. In vitro enzyme assay indicated activity with caffeoyl-CoA, caffeoyl glucose, chlorogenic acid and polyamine conjugates. RNAi mutants had impaired silique development and seed setting.O.I.C.G.H.G.
52.099.840.2At3g11000820271-F:unknown;P:unknown;C:endomembrane system;POBFMVO.I.C.G.H.G.
46.799.824.6At1g23560838966unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
44.499.8474.3At3g15400820779ATA20Encodes a protein with novel repeat sequences and a glycine-rich domain which has a 53% identity to GRP1, a petunia glycine-rich cell wall protein.O.I.C.G.H.G.
44.499.8217.2At3g51590824322LTP12 (LIPID TRANSFER PROTEIN 12)Encodes a member of the lipid transfer protein family. Proteins of this family are generally small (~9 kD), basic, expressed abundantly and contain eight Cys residues. The proteins can bind fatty acids and acylCoA esters and can transfer several different phospholipids. They are localized to the cell wall. The LTP12 promoter is active exclusively in the tapetum during the uninucleate microspore and bicellular pollen stages. Predicted to be a member of PR-14 pathogenesis-related protein family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.O.I.C.G.H.G.
43.699.881.1At1g02813839360unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;POO.I.C.G.H.G.
43.099.892.2At4g37900829946glycine-rich proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;BMPOFVAO.I.C.G.H.G.
41.399.850.7At4g00040828224chalcone and stilbene synthase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity;P:phenylpropanoid biosynthetic process, biosynthetic process, metabolic process;C:unknown;PBOFO.I.C.G.H.G.
39.499.896.3At1g06260837137cysteine proteinase, putativeF:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:endomembrane system;MOPVBAFO.I.C.G.H.G.
39.099.818.9At1g23590838969unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
38.599.855.9At3g26125822212CYP86C2encodes a protein with cytochrome P450 domainO.I.C.G.H.G.
37.999.826.7At3g43920823508ribonuclease III family proteinEncodes a ribonuclease III family protein that is required for endogenous RDR2-dependent siRNA (but not miRNA) formation.O.I.C.G.H.G.
37.799.7147.8At1g75930843926EXL6member of Lipase proteinsO.I.C.G.H.G.
37.299.754.7At1g28375839734unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
36.899.7374.4At5g07550830648GRP19 (GLYCINE-RICH PROTEIN 19)member of Oleosin-like protein familyO.I.C.G.H.G.
36.599.727.6At1g20150838605subtilase family proteinF:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAMO.I.C.G.H.G.
34.599.747.7At1g75920843925family II extracellular lipase 5 (EXL5)F:lipase activity, carboxylesterase activity, acyltransferase activity;P:sexual reproduction;C:extracellular region;PBFOMO.I.C.G.H.G.
33.199.794.3At5g07540830647GRP16 (GLYCINE-RICH PROTEIN 16)encodes a glycine-rich protein that is expressed only in flowers during a specific developmental stage (flower stages 11 and 12).O.I.C.G.H.G.
33.099.717.8At3g03290821301universal stress protein (USP) family proteinF:molecular_function unknown;P:response to stress;C:unknown;PMOFO.I.C.G.H.G.
31.599.714.1At5g49070834966KCS21 (3-KETOACYL-COA SYNTHASE 21)Encodes KCS21, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).O.I.C.G.H.G.
29.999.766.7At1g02190839541CER1 protein, putativeF:oxidoreductase activity, iron ion binding, catalytic activity;P:oxidation reduction, fatty acid biosynthetic process;C:endoplasmic reticulum;BOPFMVO.I.C.G.H.G.
29.899.733.4At1g74550843796CYP98A9member of CYP98AO.I.C.G.H.G.
29.399.736.2At4g23660828466AtPPT1 (Arabidopsis thaliana polyprenyltransferase 1)Encodes para-hydroxy benzoate polyprenyl diphosphate transferase. The enzyme was shown to be able to use a wide range of prenyl substrates : from GPP (C10) to decaprenyl diphosphate (C50).O.I.C.G.H.G.
29.199.7218.7At5g07530830646GRP17 (GLYCINE RICH PROTEIN 17)encodes a glycine-rich protein that has oleosin domain and is expressed specifically during flower stages 10 to 12. Protein is found on mature pollen coat.O.I.C.G.H.G.
28.699.718.6At2g18420816357-Encodes a Gibberellin-regulated GASA/GAST/Snakin family proteinO.I.C.G.H.G.
28.399.727.9At3g23770821959glycosyl hydrolase family 17 proteinF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFOO.I.C.G.H.G.
28.099.715.3At1g26710839212unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PO.I.C.G.H.G.
27.799.7130.3At5g62210836342embryo-specific protein-relatedF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;MPOFVBAO.I.C.G.H.G.
27.699.756.4At3g03450821251RGL2 (RGA-LIKE 2)Encodes a DELLA protein, a member of the GRAS superfamily of putative transcription factors. DELLA proteins restrain the cell proliferation and expansion that drives plant growth. Negative regulator of the response to GA in controlling seed germination. GA triggers the degradation of RGL2 protein in a process blocked by both proteasome inhibitors and serine/threonine phosphatase inhibitors. The protein undergoes degradation in response to GA via the 26S proteasome. RGL2 may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Rapidly degraded in response to GA. Regulates GA-promoted seed germination. Involved in flower and fruit development.O.I.C.G.H.G.
26.999.7157.3At5g07560830649GRP20 (GLYCINE-RICH PROTEIN 20)Lipid-binding oleosins, glycine-rich protein.O.I.C.G.H.G.
26.899.761.4At1g24070839019ATCSLA10encodes a gene similar to cellulose synthaseO.I.C.G.H.G.
26.399.720.8At5g61540836275L-asparaginase, putative / L-asparagine amidohydrolase, putativeF:asparaginase activity, hydrolase activity;P:glycoprotein catabolic process;C:endomembrane system;BOMPAFO.I.C.G.H.G.
25.599.723.4At3g23840821967transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:chloroplast thylakoid membrane;PFBO.I.C.G.H.G.
25.399.621.2At3g52810824447PAP21 (PURPLE ACID PHOSPHATASE 21)F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBMOFAO.I.C.G.H.G.
25.099.6258.1At3g2850082248060S acidic ribosomal protein P2 (RPP2C)F:structural constituent of ribosome;P:translational elongation;C:cytosol, cytosolic ribosome, ribosome, plasma membrane;MFOPABO.I.C.G.H.G.
25.099.665.3At1g54020841840myrosinase-associated protein, putativeF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:vacuole;PBMO.I.C.G.H.G.
25.099.617.5At1g23580838968unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
24.699.692.6At1g65370842848meprin and TRAF homology domain-containing protein / MATH domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
24.499.636.1At5g07520830645GRP18 (GLYCINE-RICH PROTEIN 18)encodes a glycine-rich protein that is expressed only in flowers during a specific developmental stage (flower stage 12).O.I.C.G.H.G.
23.299.649.2At3g59530825122strictosidine synthase family proteinF:strictosidine synthase activity;P:alkaloid biosynthetic process, pollen exine formation;C:endomembrane system;BPMOFAO.I.C.G.H.G.
22.799.654.9At2g03740814901late embryogenesis abundant domain-containing protein / LEA domain-containing proteinF:molecular_function unknown;P:embryonic development ending in seed dormancy;C:unknown;PBMOFAO.I.C.G.H.G.
22.699.6270.4At1g52030841632MBP2 (MYROSINASE-BINDING PROTEIN 2)Similar to myrosinase binding proteins which may be involved in metabolizing glucosinolates and forming defense compounds to protect against herbivory. Also similar to lectins and other agglutinating factors. Expressed only in flowers.O.I.C.G.H.G.
22.399.651.1At1g30020839881unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
22.299.663.7At2g03850814911late embryogenesis abundant domain-containing protein / LEA domain-containing proteinF:molecular_function unknown;P:embryonic development ending in seed dormancy;C:unknown;PBOMFAO.I.C.G.H.G.
22.099.618.6At1g32780840172alcohol dehydrogenase, putativeF:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:oxidation reduction, metabolic process;C:unknown;BOPFMAVO.I.C.G.H.G.
21.799.659.6At4g20050827750QRT3 (QUARTET 3)Encodes a polygalacturonase that plays a direct role in degrading the pollen mother cell wall during microspore development.O.I.C.G.H.G.
21.699.653.6At2g42200818820SPL9 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 9)Encodes a putative transcriptional regulator that is involved in the vegetative to reproductive phase transition. Expresssion is regulated by MIR156b.O.I.C.G.H.G.
21.499.6209.8At4g04460825776aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis, lipid metabolic process;C:endomembrane system;MFOPBO.I.C.G.H.G.
20.599.639.4At3g20450821590-F:molecular_function unknown;P:intracellular protein transport;C:endomembrane system, integral to membrane, endoplasmic reticulum;PO.I.C.G.H.G.
20.399.650.2At3g57810824950OTU-like cysteine protease family proteinF:cysteine-type peptidase activity;P:biological_process unknown;C:unknown;MPOFO.I.C.G.H.G.
20.299.647.6At3g03910821072GDH3 (GLUTAMATE DEHYDROGENASE 3)GDH3 encodes a member of the glutamate dehydrogenease family. Its expression is upregulated in response to cytokinin and it may play a role in the control of nitrogen metabolism in leaf development.O.I.C.G.H.G.
19.899.615.2At4g39010830056AtGH9B18 (Arabidopsis thaliana glycosyl hydrolase 9B18)F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOFO.I.C.G.H.G.
19.699.648.0At3g03790821145ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family proteinF:binding;P:biological_process unknown;C:unknown;MOBFPVAO.I.C.G.H.G.
19.399.677.8At5g08540830754unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast, chloroplast envelope;POO.I.C.G.H.G.
19.399.612.2At1g06250837135lipase class 3 family proteinF:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;POFBMVO.I.C.G.H.G.
19.099.520.6At2g16910816194AMS (ABORTED MICROSPORES)Sporophytic male sterile; MYC Transcription FactorO.I.C.G.H.G.
18.699.524.5At3g03300821300DCL2 (DICER-LIKE 2)Encodes a Dicer-like protein that functions in the antiviral silencing response in turnip-crinkle virus-infected plants but not in TMV or CMV-strain-Y-infected plants. Involved in the production of ta-siRNAs. Partially antagonizes the production of miRNAs by DCL1. Substitutes for DCL4 to produce viral siRNA when DCL4 is missing or inhibited. Able to produce siRNAs but not miRNAs.O.I.C.G.H.G.
18.599.579.4At1g23240838933caleosin-related family proteinF:lipase activity, calcium ion binding;P:unknown;C:extracellular region;PFOO.I.C.G.H.G.
18.499.565.1At5g20740832197invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
18.399.537.0At2g42800818880AtRLP29 (Receptor Like Protein 29)F:protein binding;P:unknown;C:anchored to membrane, plant-type cell wall;PMOBFAO.I.C.G.H.G.
18.099.546.1At5g15800831436SEP1 (SEPALLATA1)Encodes a MADS box transcription factor involved flower and ovule development. Functionally redundant with SEP2 and SEP3.O.I.C.G.H.G.
17.799.514.9At4g00870827990basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFOO.I.C.G.H.G.
17.699.5160.2At2g077833768188-F:unknown;P:unknown;C:unknownO.I.C.G.H.G.
17.599.5275.3At3g04290819584LTL1 (LI-TOLERANT LIPASE 1)F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
17.599.574.0At2g19110816428HMA4Encodes a protein with similarity to Zn ATPase. Can rescue Zn deficiency in yeast and Cd resistance, suggesting a role in Zn and Cd transport.O.I.C.G.H.G.
17.499.536.3At3g06220819796DNA binding / transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;PO.I.C.G.H.G.
17.399.59.7At5g62320836353ATMYB99 (MYB DOMAIN PROTEIN 99)Encodes a putative transcription factor (MYB99).O.I.C.G.H.G.
17.299.521.5At1g75090843846methyladenine glycosylase family proteinF:DNA-3-methyladenine glycosylase I activity, catalytic activity;P:DNA repair, base-excision repair;C:unknown;BOPAMFO.I.C.G.H.G.
16.699.5296.8At4g29030829024glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVAO.I.C.G.H.G.
16.399.515.7At1g23670838977unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
16.399.512.9At1g19830838570auxin-responsive protein, putativeF:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;POO.I.C.G.H.G.
16.399.511.2At1g06990837209GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
16.299.513.5At1g47610841170transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:heterotrimeric G-protein complex;MFOBPAO.I.C.G.H.G.
16.199.538.9At5g16920831555-F:molecular_function unknown;P:unknown;C:endomembrane system;POO.I.C.G.H.G.
16.199.516.9At1g24470839063short-chain dehydrogenase/reductase (SDR) family proteinEncodes one of the two Arabidopsis homologues to YBR159w encoding a S. cerevisiae beta-ketoacyl reductase (KCR), which catalyzes the first reduction during VLCFA (very long chain fatty acids, >18 carbon) elongation: KCR1 (At1g67730), KCR2 (At1g24470). Complementation of the yeast ybr159Delta mutant demonstrated that the two KCR proteins are divergent and that only AtKCR1 can restore heterologous elongase activity similar to the native yeast KCR gene.O.I.C.G.H.G.



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