CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM131608

Assay name ATGE_42_D

GSE experiment GSE5632: AtGenExpress: Developmental series (flowers and pollen)

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
775.3 100.0 63.5 At2g17845 816294 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAV O.I. C.G. H.G.
765.7 100.0 178.1 At1g22380 838845 AtUGT85A3 (UDP-glucosyl transferase 85A3) F:transferase activity, transferring glycosyl groups, transcription factor activity, glucuronosyltransferase activity;P:metabolic process;C:cellular_component unknown;PMVBOF O.I. C.G. H.G.
680.0 100.0 109.3 At3g55870 824753 anthranilate synthase, alpha subunit, putative F:oxo-acid-lyase activity, anthranilate synthase activity;P:tryptophan biosynthetic process, biosynthetic process;C:endomembrane system;BOFAPM O.I. C.G. H.G.
676.7 100.0 57.5 At4g18980 827634 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
588.9 100.0 185.8 At1g70720 843409 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
564.0 100.0 69.6 At1g20180 838607 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
502.4 100.0 216.6 At1g66120 842926 acyl-activating enzyme 11 (AAE11) F:catalytic activity;P:metabolic process;C:unknown;BOMFPAV O.I. C.G. H.G.
482.5 100.0 95.8 At1g66540 842972 cytochrome P450, putative F:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:unknown;C:unknown;MPFBOAV O.I. C.G. H.G.
469.0 100.0 58.9 At1g13070 3766715 - putative cytochrome P450 O.I. C.G. H.G.
425.9 100.0 111.9 At2g28085 817353 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PO O.I. C.G. H.G.
424.8 100.0 324.4 At1g61680 842465 TPS14 (TERPENE SYNTHASE 14) F:S-linalool synthase activity;P:monoterpene biosynthetic process;C:plastid;PO O.I. C.G. H.G.
411.1 100.0 160.6 At2g45560 819164 CYP76C1 cytochrome P450 monooxygenase O.I. C.G. H.G.
396.3 100.0 119.1 At4g00950 827948 MEE47 (maternal effect embryo arrest 47) F:transcription factor activity;P:embryonic development ending in seed dormancy, regulation of transcription;C:cellular_component unknown;PMFO O.I. C.G. H.G.
395.4 100.0 86.4 At5g24860 832555 FPF1 (FLOWERING PROMOTING FACTOR 1) encodes a small protein of 12.6 kDa that regulates flowering and is involved in gibberellin signalling pathway. It is expressed in apical meristems immediately after the photoperiodic induction of flowering. Genetic interactions with flowering time and floral organ identity genes suggest that this gene may be involved in modulating the competence to flower. There are two other genes similar to FPF1, FLP1 (At4g31380) and FLP2 (no locus name yet, on BAC F8F16 on chr 4). This is so far a plant-specific gene and is only found in long-day mustard, arabidopsis, and rice. O.I. C.G. H.G.
391.4 100.0 60.3 At3g44250 823550 CYP71B38 putative cytochrome P450 O.I. C.G. H.G.
391.1 100.0 139.1 At1g35290 840418 thioesterase family protein F:hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity;P:biological_process unknown;C:unknown;BOPA O.I. C.G. H.G.
357.1 100.0 330.6 At2g24210 816955 TPS10 (terpene synthase 10) F:myrcene synthase activity, (E)-beta-ocimene synthase activity;P:response to jasmonic acid stimulus, monoterpenoid biosynthetic process, response to wounding;C:unknown;PO O.I. C.G. H.G.
317.7 100.0 90.2 At4g39480 830103 CYP96A9 (CYTOCHROME P450 96 A9) member of CYP96A O.I. C.G. H.G.
311.6 100.0 268.5 At3g53300 824497 CYP71B31 putative cytochrome P450 O.I. C.G. H.G.
309.2 100.0 161.5 At1g02470 837812 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOP O.I. C.G. H.G.
303.2 100.0 256.1 At4g15620 827239 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
296.6 100.0 181.1 At1g54570 841899 esterase/lipase/thioesterase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity;P:unknown;C:chloroplast, plastoglobule;BMPOF O.I. C.G. H.G.
294.9 100.0 142.6 At5g04200 830299 AtMC9 (metacaspase 9) F:cysteine-type peptidase activity;P:proteolysis;C:apoplast;FPBOA O.I. C.G. H.G.
284.2 100.0 225.9 At2g17880 816298 DNAJ heat shock protein, putative F:heat shock protein binding;P:protein folding;C:chloroplast;BOMFPAV O.I. C.G. H.G.
279.8 100.0 83.0 At1g51440 841569 lipase class 3 family protein F:triacylglycerol lipase activity;P:lipid metabolic process;C:chloroplast;POFBMV O.I. C.G. H.G.
270.8 100.0 243.9 At2g45580 819166 CYP76C3 member of CYP76C O.I. C.G. H.G.
251.1 100.0 220.1 At3g01980 821069 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:peroxisome;BOFMPA O.I. C.G. H.G.
246.5 100.0 194.5 At3g55290 824695 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:peroxisome;BOMFPAV O.I. C.G. H.G.
226.6 100.0 101.0 At1g23060 838914 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MPOBFV O.I. C.G. H.G.
215.9 100.0 131.4 At3g01530 821113 AtMYB57 (myb domain protein 57) Member of the R2R3 factor gene family. O.I. C.G. H.G.
196.6 100.0 30.0 At5g53810 835462 O-methyltransferase, putative F:methyltransferase activity, protein dimerization activity, O-methyltransferase activity;P:unknown;C:cytosol;PBFOM O.I. C.G. H.G.
196.0 100.0 108.9 At4g24000 828500 ATCSLG2 encodes a protein similar to cellulose synthase O.I. C.G. H.G.
185.7 100.0 325.8 At5g45890 834629 SAG12 (SENESCENCE-ASSOCIATED GENE 12) Senescence-associated gene 12 (SAG12) encoding a cysteine protease influenced by cytokinin, auxin, and sugars.Localized to special vacuole found during senescence called senescence associated vacuoles which are different from central vacuole in the tonoplast composition and pH. O.I. C.G. H.G.
174.5 100.0 122.2 At1g23010 838909 LPR1 (Low Phosphate Root1) Encodes a protein with multicopper oxidase activity. O.I. C.G. H.G.
170.8 100.0 85.5 At5g45940 834634 atnudt11 (Arabidopsis thaliana Nudix hydrolase homolog 11) Encodes a CoA pyrophosphatase, also has minor activity of NADH pyrophosphatase. Most strongly expressed in embryo cotyledon and hypocotyl, flower, and phloem of vascular tissue. Over-expression mutant had a bigger plant with wider rosette. O.I. C.G. H.G.
169.7 100.0 54.5 At1g54790 841920 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM O.I. C.G. H.G.
166.3 100.0 202.7 At2g38110 818389 GPAT6 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 6) Encodes a protein with glycerol-3-phosphate acyltransferase activity. O.I. C.G. H.G.
166.2 100.0 47.1 At1g02070 839270 unknown protein F:unknown;P:unknown;C:cellular_component unknown;P O.I. C.G. H.G.
165.3 100.0 73.7 At5g40350 834033 MYB24 (myb domain protein 24) Myb24 transcription factor. Member of the R2R3 factor gene family. Induced by jasmonate. Involved in jasmonate response during stamen development. O.I. C.G. H.G.
164.3 99.9 107.2 At5g17700 831637 MATE efflux family protein F:drug transporter activity, antiporter activity, transporter activity;P:multidrug transport;C:membrane;BPOFMA O.I. C.G. H.G.
163.9 99.9 123.4 At1g59640 842254 ZCW32 A basic helix-loop-helix encoding gene (BIGPETAL, BPE) involved in the control of petal size. BPE is expressed via two mRNAs derived from an alternative splicing event. The BPEub (AT1G59640.1)transcript is expressed ubiquitously, whereas the BPEp (AT1G59640.2) transcript is preferentially expressed in petals. Plants that lack the petal-expressed variant BPEp have larger petals as a result of increased cell size. BPEp is positively regulated downstream of APETALA3, PISTILLATA, APETALA1 and PISTILLATA3 and is negatively regulated downstream of AGAMOUS. O.I. C.G. H.G.
162.2 99.9 56.6 At3g10320 820194 transferase, transferring glycosyl groups F:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:cellular_component unknown;PMOBF O.I. C.G. H.G.
157.1 99.9 25.3 At2g17470 816253 unknown protein F:unknown;P:biological_process unknown;C:unknown;BPOF O.I. C.G. H.G.
156.6 99.9 303.3 At1g35310 840420 MLP168 (MLP-LIKE PROTEIN 168) F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P O.I. C.G. H.G.
155.5 99.9 30.8 At1g09155 837435 AtPP2-B15 (Phloem protein 2-B15) F:carbohydrate binding;P:unknown;C:endomembrane system;P O.I. C.G. H.G.
150.4 99.9 82.0 At4g28530 828971 anac074 (Arabidopsis NAC domain containing protein 74) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P O.I. C.G. H.G.
149.7 99.9 202.1 At3g21550 821709 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
147.3 99.9 77.9 At4g10310 826623 HKT1 (HIGH-AFFINITY K+ TRANSPORTER 1) encodes a sodium transporter (HKT1) expressed in xylem parenchyma cells. Mutants over-accumulate sodium in shoot tissue and have increased sodium in the xylem sap and reduced sodium in phloem sap and roots. O.I. C.G. H.G.
140.9 99.9 223.9 At1g35190 840408 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding;P:alkaloid biosynthetic process;C:cellular_component unknown;POBFM O.I. C.G. H.G.
137.1 99.9 138.1 At1g35170 840404 - F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;MPOF O.I. C.G. H.G.
136.5 99.9 170.1 At2g32530 817814 ATCSLB03 encodes a gene similar to cellulose synthase O.I. C.G. H.G.
135.9 99.9 125.7 At3g27810 822401 ATMYB21 (ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 21) Encodes a member of the R2R3-MYB transcription factor gene family. Induced by jasmonate. Involved in jasmonate response during stamen development. O.I. C.G. H.G.
127.7 99.9 156.7 At4g24120 828512 YSL1 (YELLOW STRIPE LIKE 1) Member of a small family of oligopeptide transporters similar to the yellow stripe locus of maize (ZmYS1). O.I. C.G. H.G.
126.9 99.9 155.2 At4g16130 827299 ARA1 (ARABINOSE KINASE) Similar to galactokinase. O.I. C.G. H.G.
124.6 99.9 135.5 At5g10770 830944 chloroplast nucleoid DNA-binding protein, putative F:DNA binding, aspartic-type endopeptidase activity;P:proteolysis;C:unknown;PMFOB O.I. C.G. H.G.
118.6 99.9 52.8 At1g75300 843867 isoflavone reductase, putative encodes a protein whose sequence is similar to an isoflavone reductase O.I. C.G. H.G.
118.4 99.9 132.9 At1g47960 841214 C/VIF1 (CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 1) Plant cell wall (CWI) and vacuolar invertases (VI) play important roles in carbohydrate metabolism, stress responses and sugar signaling. O.I. C.G. H.G.
113.8 99.9 51.3 At4g16620 827363 integral membrane family protein / nodulin MtN21-related F:molecular_function unknown;P:unknown;C:membrane;PBOFAM O.I. C.G. H.G.
111.6 99.9 181.7 At5g66590 836791 allergen V5/Tpx-1-related family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFBO O.I. C.G. H.G.
107.5 99.9 49.7 At4g22730 828369 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;PMOBFVA O.I. C.G. H.G.
106.7 99.9 107.1 At4g35110 829663 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBVFA O.I. C.G. H.G.
106.6 99.9 78.1 At3g23790 821961 AMP-binding protein, putative F:catalytic activity;P:metabolic process;C:chloroplast envelope;BOMFPAV O.I. C.G. H.G.
104.0 99.9 167.0 At1g78960 844236 ATLUP2 Encodes a multifunctional 2-3-oxidosqualene (OS)-triterpene cyclase that can cyclize OS into lupeol, alpha- and beta-amyrin. O.I. C.G. H.G.
103.8 99.9 58.2 At4g18550 827587 lipase class 3 family protein F:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;PFOBMV O.I. C.G. H.G.
100.9 99.9 59.6 At4g38950 830050 kinesin motor family protein F:microtubule motor activity, ATP binding;P:microtubule-based process, microtubule-based movement;C:microtubule associated complex;MOPF O.I. C.G. H.G.
100.0 99.9 125.5 At4g18425 827573 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
98.2 99.9 112.6 At2g47270 819340 transcription factor/ transcription regulator F:transcription factor activity, transcription regulator activity;P:regulation of transcription;C:nucleus;P O.I. C.G. H.G.
95.9 99.9 102.3 At1g75880 843921 family II extracellular lipase 1 (EXL1) F:lipase activity, carboxylesterase activity, acyltransferase activity;P:sexual reproduction;C:extracellular region;PBFOM O.I. C.G. H.G.
94.7 99.9 182.2 At4g22920 828391 NYE1 (NON-YELLOWING 1) Similar to the tomato senescence-inducible chloroplast stay-green protein 1. It is upregulated during maximal senescence in the Arabidopsis life cycle, especially in senescent leaves. O.I. C.G. H.G.
94.5 99.9 143.5 At2g34870 818052 MEE26 (maternal effect embryo arrest 26) F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:endomembrane system;MPOVFBA O.I. C.G. H.G.
93.6 99.9 165.1 At1g76240 843957 unknown protein F:molecular_function unknown;P:unknown;C:chloroplast;PMO O.I. C.G. H.G.
90.7 99.9 68.9 At2g42900 818891 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
88.6 99.9 19.9 At1g75290 843866 oxidoreductase, acting on NADH or NADPH encodes a protein whose sequence is similar to an isoflavone reductase O.I. C.G. H.G.
86.3 99.9 7.3 At3g23460 821927 cyclopropane fatty acid synthase-related F:cyclopropane-fatty-acyl-phospholipid synthase activity;P:lipid biosynthetic process;C:chloroplast;OBPFM O.I. C.G. H.G.
86.1 99.9 33.8 At2g01460 814674 ATP binding / kinase F:kinase activity, ATP binding;P:biosynthetic process;C:cellular_component unknown;BOMFPAV O.I. C.G. H.G.
85.6 99.9 109.5 At1g30040 839883 ATGA2OX2 (GIBBERELLIN 2-OXIDASE) Encodes a gibberellin 2-oxidase. AtGA2OX2 expression is responsive to cytokinin and KNOX activities. O.I. C.G. H.G.
85.6 99.9 61.7 At5g63450 836464 CYP94B1 member of CYP94B O.I. C.G. H.G.
85.4 99.9 64.4 At2g32430 817804 galactosyltransferase family protein F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:protein amino acid glycosylation;C:endomembrane system, membrane;MPO O.I. C.G. H.G.
84.2 99.9 153.7 At5g01520 831747 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MOPVF O.I. C.G. H.G.
82.8 99.9 83.5 At1g11190 837660 BFN1 (BIFUNCTIONAL NUCLEASE I) Encodes a bifunctional nuclease that acts on both RNA and DNA involved in nucleic acid degradation to facilitate nucleotide and phosphate recovery during senescence. It has mismatch-specific endonuclease activity with wide recognition of single base mismatches as well as the ability to cleave indel types of mismatches (heteroduplexes with loops). O.I. C.G. H.G.
82.3 99.9 201.0 At3g54340 824601 AP3 (APETALA 3) Floral homeotic gene encoding a MADS domain protein homologous to SRF transcription factors. Specifies petal and stamen identities. Associates with PISTILLATA. O.I. C.G. H.G.
78.2 99.9 66.0 At1g06520 837163 GPAT1 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 1) Encodes a membrane associated mitochondrial localized protein with glycerol-3-phosphate acyltransferase activity.Expressed in flower buds and siliques. Homozygous mutant plants are male sterile and have abnormal glycerolipid levels. O.I. C.G. H.G.
72.5 99.9 197.8 At1g69490 843282 NAP (NAC-like, activated by AP3/PI) Encodes a member of the NAC transcription factor gene family. It is expressed in floral primordia and upregulated by AP3 and PI. Its expression is associated with leaf senescence. O.I. C.G. H.G.
71.0 99.9 280.2 At5g45950 834635 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM O.I. C.G. H.G.
70.1 99.9 67.1 At2g40670 818662 ARR16 (ARABIDOPSIS RESPONSE REGULATOR 16) response regulator 16 O.I. C.G. H.G.
68.8 99.9 177.7 At1g70670 843404 caleosin-related family protein F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;PFO O.I. C.G. H.G.
68.8 99.9 91.8 At5g23750 832440 remorin family protein F:DNA binding;P:biological_process unknown;C:cellular_component unknown;OMBFPVA O.I. C.G. H.G.
67.1 99.8 28.3 At1g70270 843363 ATP binding / DNA binding F:DNA binding, ATP binding;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
65.5 99.8 66.5 At3g05400 819704 sugar transporter, putative F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BMFPOA O.I. C.G. H.G.
64.7 99.8 30.3 At2g23180 816850 CYP96A1 member of CYP96A O.I. C.G. H.G.
63.7 99.8 48.5 At1g11410 837683 S-locus protein kinase, putative F:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
63.3 99.8 36.0 At1g29230 839797 CIPK18 (CBL-INTERACTING PROTEIN KINASE 18) Encodes a member of the SNF1-related kinase (SnRK) gene family (SnRK3.20), which has also been reported as a member of the CBL-interacting protein kinases (CIPK18). O.I. C.G. H.G.
62.2 99.8 43.7 At1g30220 839902 INT2 (INOSITOL TRANSPORTER 2) F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOAV O.I. C.G. H.G.
61.8 99.8 99.4 At5g21100 832234 L-ascorbate oxidase, putative F:oxidoreductase activity, copper ion binding, L-ascorbate oxidase activity;P:oxidation reduction;C:plant-type cell wall;BFPMOA O.I. C.G. H.G.
61.8 99.8 58.6 At1g71140 843454 MATE efflux family protein F:drug transporter activity, antiporter activity, transporter activity;P:multidrug transport;C:plasma membrane, membrane;BOPFMA O.I. C.G. H.G.
59.5 99.8 23.6 At2g45040 819111 matrix metalloproteinase F:metallopeptidase activity, metalloendopeptidase activity;P:proteolysis, metabolic process;C:anchored to membrane;MOPBVFA O.I. C.G. H.G.
57.7 99.8 163.2 At5g63850 836505 AAP4 Amino acid transporter whose expression is downregulated by dehydration. O.I. C.G. H.G.
57.7 99.8 14.5 At1g30080 839887 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFO O.I. C.G. H.G.
57.2 99.8 144.0 At2g41540 818752 GPDHC1 Encodes a protein with NAD-dependent glycerol-3-phosphate (G3P) dehydrogenase which was shown to complement an Escherichia coli strain: BB20-14, auxotrophic for glycerol/G3P due to a loss-of-function mutation in the gpsA gene. O.I. C.G. H.G.
56.9 99.8 86.8 At3g14380 820659 integral membrane family protein F:unknown;P:unknown;C:membrane;P O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
775.3	100.0	63.5	At2g17845	816294	short-chain dehydrogenase/reductase (SDR) family protein	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAV	O.I.	C.G.	H.G.
765.7	100.0	178.1	At1g22380	838845	AtUGT85A3 (UDP-glucosyl transferase 85A3)	F:transferase activity, transferring glycosyl groups, transcription factor activity, glucuronosyltransferase activity;P:metabolic process;C:cellular_component unknown;PMVBOF	O.I.	C.G.	H.G.
680.0	100.0	109.3	At3g55870	824753	anthranilate synthase, alpha subunit, putative	F:oxo-acid-lyase activity, anthranilate synthase activity;P:tryptophan biosynthetic process, biosynthetic process;C:endomembrane system;BOFAPM	O.I.	C.G.	H.G.
676.7	100.0	57.5	At4g18980	827634	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
588.9	100.0	185.8	At1g70720	843409	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
564.0	100.0	69.6	At1g20180	838607	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
502.4	100.0	216.6	At1g66120	842926	acyl-activating enzyme 11 (AAE11)	F:catalytic activity;P:metabolic process;C:unknown;BOMFPAV	O.I.	C.G.	H.G.
482.5	100.0	95.8	At1g66540	842972	cytochrome P450, putative	F:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:unknown;C:unknown;MPFBOAV	O.I.	C.G.	H.G.
469.0	100.0	58.9	At1g13070	3766715	-	putative cytochrome P450	O.I.	C.G.	H.G.
425.9	100.0	111.9	At2g28085	817353	auxin-responsive family protein	F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
424.8	100.0	324.4	At1g61680	842465	TPS14 (TERPENE SYNTHASE 14)	F:S-linalool synthase activity;P:monoterpene biosynthetic process;C:plastid;PO	O.I.	C.G.	H.G.
411.1	100.0	160.6	At2g45560	819164	CYP76C1	cytochrome P450 monooxygenase	O.I.	C.G.	H.G.
396.3	100.0	119.1	At4g00950	827948	MEE47 (maternal effect embryo arrest 47)	F:transcription factor activity;P:embryonic development ending in seed dormancy, regulation of transcription;C:cellular_component unknown;PMFO	O.I.	C.G.	H.G.
395.4	100.0	86.4	At5g24860	832555	FPF1 (FLOWERING PROMOTING FACTOR 1)	encodes a small protein of 12.6 kDa that regulates flowering and is involved in gibberellin signalling pathway. It is expressed in apical meristems immediately after the photoperiodic induction of flowering. Genetic interactions with flowering time and floral organ identity genes suggest that this gene may be involved in modulating the competence to flower. There are two other genes similar to FPF1, FLP1 (At4g31380) and FLP2 (no locus name yet, on BAC F8F16 on chr 4). This is so far a plant-specific gene and is only found in long-day mustard, arabidopsis, and rice.	O.I.	C.G.	H.G.
391.4	100.0	60.3	At3g44250	823550	CYP71B38	putative cytochrome P450	O.I.	C.G.	H.G.
391.1	100.0	139.1	At1g35290	840418	thioesterase family protein	F:hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity;P:biological_process unknown;C:unknown;BOPA	O.I.	C.G.	H.G.
357.1	100.0	330.6	At2g24210	816955	TPS10 (terpene synthase 10)	F:myrcene synthase activity, (E)-beta-ocimene synthase activity;P:response to jasmonic acid stimulus, monoterpenoid biosynthetic process, response to wounding;C:unknown;PO	O.I.	C.G.	H.G.
317.7	100.0	90.2	At4g39480	830103	CYP96A9 (CYTOCHROME P450 96 A9)	member of CYP96A	O.I.	C.G.	H.G.
311.6	100.0	268.5	At3g53300	824497	CYP71B31	putative cytochrome P450	O.I.	C.G.	H.G.
309.2	100.0	161.5	At1g02470	837812	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOP	O.I.	C.G.	H.G.
303.2	100.0	256.1	At4g15620	827239	integral membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
296.6	100.0	181.1	At1g54570	841899	esterase/lipase/thioesterase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity;P:unknown;C:chloroplast, plastoglobule;BMPOF	O.I.	C.G.	H.G.
294.9	100.0	142.6	At5g04200	830299	AtMC9 (metacaspase 9)	F:cysteine-type peptidase activity;P:proteolysis;C:apoplast;FPBOA	O.I.	C.G.	H.G.
284.2	100.0	225.9	At2g17880	816298	DNAJ heat shock protein, putative	F:heat shock protein binding;P:protein folding;C:chloroplast;BOMFPAV	O.I.	C.G.	H.G.
279.8	100.0	83.0	At1g51440	841569	lipase class 3 family protein	F:triacylglycerol lipase activity;P:lipid metabolic process;C:chloroplast;POFBMV	O.I.	C.G.	H.G.
270.8	100.0	243.9	At2g45580	819166	CYP76C3	member of CYP76C	O.I.	C.G.	H.G.
251.1	100.0	220.1	At3g01980	821069	short-chain dehydrogenase/reductase (SDR) family protein	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:peroxisome;BOFMPA	O.I.	C.G.	H.G.
246.5	100.0	194.5	At3g55290	824695	short-chain dehydrogenase/reductase (SDR) family protein	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:peroxisome;BOMFPAV	O.I.	C.G.	H.G.
226.6	100.0	101.0	At1g23060	838914	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;MPOBFV	O.I.	C.G.	H.G.
215.9	100.0	131.4	At3g01530	821113	AtMYB57 (myb domain protein 57)	Member of the R2R3 factor gene family.	O.I.	C.G.	H.G.
196.6	100.0	30.0	At5g53810	835462	O-methyltransferase, putative	F:methyltransferase activity, protein dimerization activity, O-methyltransferase activity;P:unknown;C:cytosol;PBFOM	O.I.	C.G.	H.G.
196.0	100.0	108.9	At4g24000	828500	ATCSLG2	encodes a protein similar to cellulose synthase	O.I.	C.G.	H.G.
185.7	100.0	325.8	At5g45890	834629	SAG12 (SENESCENCE-ASSOCIATED GENE 12)	Senescence-associated gene 12 (SAG12) encoding a cysteine protease influenced by cytokinin, auxin, and sugars.Localized to special vacuole found during senescence called senescence associated vacuoles which are different from central vacuole in the tonoplast composition and pH.	O.I.	C.G.	H.G.
174.5	100.0	122.2	At1g23010	838909	LPR1 (Low Phosphate Root1)	Encodes a protein with multicopper oxidase activity.	O.I.	C.G.	H.G.
170.8	100.0	85.5	At5g45940	834634	atnudt11 (Arabidopsis thaliana Nudix hydrolase homolog 11)	Encodes a CoA pyrophosphatase, also has minor activity of NADH pyrophosphatase. Most strongly expressed in embryo cotyledon and hypocotyl, flower, and phloem of vascular tissue. Over-expression mutant had a bigger plant with wider rosette.	O.I.	C.G.	H.G.
169.7	100.0	54.5	At1g54790	841920	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM	O.I.	C.G.	H.G.
166.3	100.0	202.7	At2g38110	818389	GPAT6 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 6)	Encodes a protein with glycerol-3-phosphate acyltransferase activity.	O.I.	C.G.	H.G.
166.2	100.0	47.1	At1g02070	839270	unknown protein	F:unknown;P:unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
165.3	100.0	73.7	At5g40350	834033	MYB24 (myb domain protein 24)	Myb24 transcription factor. Member of the R2R3 factor gene family. Induced by jasmonate. Involved in jasmonate response during stamen development.	O.I.	C.G.	H.G.
164.3	99.9	107.2	At5g17700	831637	MATE efflux family protein	F:drug transporter activity, antiporter activity, transporter activity;P:multidrug transport;C:membrane;BPOFMA	O.I.	C.G.	H.G.
163.9	99.9	123.4	At1g59640	842254	ZCW32	A basic helix-loop-helix encoding gene (BIGPETAL, BPE) involved in the control of petal size. BPE is expressed via two mRNAs derived from an alternative splicing event. The BPEub (AT1G59640.1)transcript is expressed ubiquitously, whereas the BPEp (AT1G59640.2) transcript is preferentially expressed in petals. Plants that lack the petal-expressed variant BPEp have larger petals as a result of increased cell size. BPEp is positively regulated downstream of APETALA3, PISTILLATA, APETALA1 and PISTILLATA3 and is negatively regulated downstream of AGAMOUS.	O.I.	C.G.	H.G.
162.2	99.9	56.6	At3g10320	820194	transferase, transferring glycosyl groups	F:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:cellular_component unknown;PMOBF	O.I.	C.G.	H.G.
157.1	99.9	25.3	At2g17470	816253	unknown protein	F:unknown;P:biological_process unknown;C:unknown;BPOF	O.I.	C.G.	H.G.
156.6	99.9	303.3	At1g35310	840420	MLP168 (MLP-LIKE PROTEIN 168)	F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P	O.I.	C.G.	H.G.
155.5	99.9	30.8	At1g09155	837435	AtPP2-B15 (Phloem protein 2-B15)	F:carbohydrate binding;P:unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
150.4	99.9	82.0	At4g28530	828971	anac074 (Arabidopsis NAC domain containing protein 74)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P	O.I.	C.G.	H.G.
149.7	99.9	202.1	At3g21550	821709	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
147.3	99.9	77.9	At4g10310	826623	HKT1 (HIGH-AFFINITY K+ TRANSPORTER 1)	encodes a sodium transporter (HKT1) expressed in xylem parenchyma cells. Mutants over-accumulate sodium in shoot tissue and have increased sodium in the xylem sap and reduced sodium in phloem sap and roots.	O.I.	C.G.	H.G.
140.9	99.9	223.9	At1g35190	840408	oxidoreductase, 2OG-Fe(II) oxygenase family protein	F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding;P:alkaloid biosynthetic process;C:cellular_component unknown;POBFM	O.I.	C.G.	H.G.
137.1	99.9	138.1	At1g35170	840404	-	F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;MPOF	O.I.	C.G.	H.G.
136.5	99.9	170.1	At2g32530	817814	ATCSLB03	encodes a gene similar to cellulose synthase	O.I.	C.G.	H.G.
135.9	99.9	125.7	At3g27810	822401	ATMYB21 (ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 21)	Encodes a member of the R2R3-MYB transcription factor gene family. Induced by jasmonate. Involved in jasmonate response during stamen development.	O.I.	C.G.	H.G.
127.7	99.9	156.7	At4g24120	828512	YSL1 (YELLOW STRIPE LIKE 1)	Member of a small family of oligopeptide transporters similar to the yellow stripe locus of maize (ZmYS1).	O.I.	C.G.	H.G.
126.9	99.9	155.2	At4g16130	827299	ARA1 (ARABINOSE KINASE)	Similar to galactokinase.	O.I.	C.G.	H.G.
124.6	99.9	135.5	At5g10770	830944	chloroplast nucleoid DNA-binding protein, putative	F:DNA binding, aspartic-type endopeptidase activity;P:proteolysis;C:unknown;PMFOB	O.I.	C.G.	H.G.
118.6	99.9	52.8	At1g75300	843867	isoflavone reductase, putative	encodes a protein whose sequence is similar to an isoflavone reductase	O.I.	C.G.	H.G.
118.4	99.9	132.9	At1g47960	841214	C/VIF1 (CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 1)	Plant cell wall (CWI) and vacuolar invertases (VI) play important roles in carbohydrate metabolism, stress responses and sugar signaling.	O.I.	C.G.	H.G.
113.8	99.9	51.3	At4g16620	827363	integral membrane family protein / nodulin MtN21-related	F:molecular_function unknown;P:unknown;C:membrane;PBOFAM	O.I.	C.G.	H.G.
111.6	99.9	181.7	At5g66590	836791	allergen V5/Tpx-1-related family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFBO	O.I.	C.G.	H.G.
107.5	99.9	49.7	At4g22730	828369	leucine-rich repeat transmembrane protein kinase, putative	F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;PMOBFVA	O.I.	C.G.	H.G.
106.7	99.9	107.1	At4g35110	829663	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBVFA	O.I.	C.G.	H.G.
106.6	99.9	78.1	At3g23790	821961	AMP-binding protein, putative	F:catalytic activity;P:metabolic process;C:chloroplast envelope;BOMFPAV	O.I.	C.G.	H.G.
104.0	99.9	167.0	At1g78960	844236	ATLUP2	Encodes a multifunctional 2-3-oxidosqualene (OS)-triterpene cyclase that can cyclize OS into lupeol, alpha- and beta-amyrin.	O.I.	C.G.	H.G.
103.8	99.9	58.2	At4g18550	827587	lipase class 3 family protein	F:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;PFOBMV	O.I.	C.G.	H.G.
100.9	99.9	59.6	At4g38950	830050	kinesin motor family protein	F:microtubule motor activity, ATP binding;P:microtubule-based process, microtubule-based movement;C:microtubule associated complex;MOPF	O.I.	C.G.	H.G.
100.0	99.9	125.5	At4g18425	827573	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
98.2	99.9	112.6	At2g47270	819340	transcription factor/ transcription regulator	F:transcription factor activity, transcription regulator activity;P:regulation of transcription;C:nucleus;P	O.I.	C.G.	H.G.
95.9	99.9	102.3	At1g75880	843921	family II extracellular lipase 1 (EXL1)	F:lipase activity, carboxylesterase activity, acyltransferase activity;P:sexual reproduction;C:extracellular region;PBFOM	O.I.	C.G.	H.G.
94.7	99.9	182.2	At4g22920	828391	NYE1 (NON-YELLOWING 1)	Similar to the tomato senescence-inducible chloroplast stay-green protein 1. It is upregulated during maximal senescence in the Arabidopsis life cycle, especially in senescent leaves.	O.I.	C.G.	H.G.
94.5	99.9	143.5	At2g34870	818052	MEE26 (maternal effect embryo arrest 26)	F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:endomembrane system;MPOVFBA	O.I.	C.G.	H.G.
93.6	99.9	165.1	At1g76240	843957	unknown protein	F:molecular_function unknown;P:unknown;C:chloroplast;PMO	O.I.	C.G.	H.G.
90.7	99.9	68.9	At2g42900	818891	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
88.6	99.9	19.9	At1g75290	843866	oxidoreductase, acting on NADH or NADPH	encodes a protein whose sequence is similar to an isoflavone reductase	O.I.	C.G.	H.G.
86.3	99.9	7.3	At3g23460	821927	cyclopropane fatty acid synthase-related	F:cyclopropane-fatty-acyl-phospholipid synthase activity;P:lipid biosynthetic process;C:chloroplast;OBPFM	O.I.	C.G.	H.G.
86.1	99.9	33.8	At2g01460	814674	ATP binding / kinase	F:kinase activity, ATP binding;P:biosynthetic process;C:cellular_component unknown;BOMFPAV	O.I.	C.G.	H.G.
85.6	99.9	109.5	At1g30040	839883	ATGA2OX2 (GIBBERELLIN 2-OXIDASE)	Encodes a gibberellin 2-oxidase. AtGA2OX2 expression is responsive to cytokinin and KNOX activities.	O.I.	C.G.	H.G.
85.6	99.9	61.7	At5g63450	836464	CYP94B1	member of CYP94B	O.I.	C.G.	H.G.
85.4	99.9	64.4	At2g32430	817804	galactosyltransferase family protein	F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:protein amino acid glycosylation;C:endomembrane system, membrane;MPO	O.I.	C.G.	H.G.
84.2	99.9	153.7	At5g01520	831747	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;MOPVF	O.I.	C.G.	H.G.
82.8	99.9	83.5	At1g11190	837660	BFN1 (BIFUNCTIONAL NUCLEASE I)	Encodes a bifunctional nuclease that acts on both RNA and DNA involved in nucleic acid degradation to facilitate nucleotide and phosphate recovery during senescence. It has mismatch-specific endonuclease activity with wide recognition of single base mismatches as well as the ability to cleave indel types of mismatches (heteroduplexes with loops).	O.I.	C.G.	H.G.
82.3	99.9	201.0	At3g54340	824601	AP3 (APETALA 3)	Floral homeotic gene encoding a MADS domain protein homologous to SRF transcription factors. Specifies petal and stamen identities. Associates with PISTILLATA.	O.I.	C.G.	H.G.
78.2	99.9	66.0	At1g06520	837163	GPAT1 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 1)	Encodes a membrane associated mitochondrial localized protein with glycerol-3-phosphate acyltransferase activity.Expressed in flower buds and siliques. Homozygous mutant plants are male sterile and have abnormal glycerolipid levels.	O.I.	C.G.	H.G.
72.5	99.9	197.8	At1g69490	843282	NAP (NAC-like, activated by AP3/PI)	Encodes a member of the NAC transcription factor gene family. It is expressed in floral primordia and upregulated by AP3 and PI. Its expression is associated with leaf senescence.	O.I.	C.G.	H.G.
71.0	99.9	280.2	At5g45950	834635	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM	O.I.	C.G.	H.G.
70.1	99.9	67.1	At2g40670	818662	ARR16 (ARABIDOPSIS RESPONSE REGULATOR 16)	response regulator 16	O.I.	C.G.	H.G.
68.8	99.9	177.7	At1g70670	843404	caleosin-related family protein	F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;PFO	O.I.	C.G.	H.G.
68.8	99.9	91.8	At5g23750	832440	remorin family protein	F:DNA binding;P:biological_process unknown;C:cellular_component unknown;OMBFPVA	O.I.	C.G.	H.G.
67.1	99.8	28.3	At1g70270	843363	ATP binding / DNA binding	F:DNA binding, ATP binding;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
65.5	99.8	66.5	At3g05400	819704	sugar transporter, putative	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BMFPOA	O.I.	C.G.	H.G.
64.7	99.8	30.3	At2g23180	816850	CYP96A1	member of CYP96A	O.I.	C.G.	H.G.
63.7	99.8	48.5	At1g11410	837683	S-locus protein kinase, putative	F:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
63.3	99.8	36.0	At1g29230	839797	CIPK18 (CBL-INTERACTING PROTEIN KINASE 18)	Encodes a member of the SNF1-related kinase (SnRK) gene family (SnRK3.20), which has also been reported as a member of the CBL-interacting protein kinases (CIPK18).	O.I.	C.G.	H.G.
62.2	99.8	43.7	At1g30220	839902	INT2 (INOSITOL TRANSPORTER 2)	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOAV	O.I.	C.G.	H.G.
61.8	99.8	99.4	At5g21100	832234	L-ascorbate oxidase, putative	F:oxidoreductase activity, copper ion binding, L-ascorbate oxidase activity;P:oxidation reduction;C:plant-type cell wall;BFPMOA	O.I.	C.G.	H.G.
61.8	99.8	58.6	At1g71140	843454	MATE efflux family protein	F:drug transporter activity, antiporter activity, transporter activity;P:multidrug transport;C:plasma membrane, membrane;BOPFMA	O.I.	C.G.	H.G.
59.5	99.8	23.6	At2g45040	819111	matrix metalloproteinase	F:metallopeptidase activity, metalloendopeptidase activity;P:proteolysis, metabolic process;C:anchored to membrane;MOPBVFA	O.I.	C.G.	H.G.
57.7	99.8	163.2	At5g63850	836505	AAP4	Amino acid transporter whose expression is downregulated by dehydration.	O.I.	C.G.	H.G.
57.7	99.8	14.5	At1g30080	839887	glycosyl hydrolase family 17 protein	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFO	O.I.	C.G.	H.G.
57.2	99.8	144.0	At2g41540	818752	GPDHC1	Encodes a protein with NAD-dependent glycerol-3-phosphate (G3P) dehydrogenase which was shown to complement an Escherichia coli strain: BB20-14, auxotrophic for glycerol/G3P due to a loss-of-function mutation in the gpsA gene.	O.I.	C.G.	H.G.
56.9	99.8	86.8	At3g14380	820659	integral membrane family protein	F:unknown;P:unknown;C:membrane;P	O.I.	C.G.	H.G.

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GSM ID	GSM131608
Assay name	ATGE_42_D
GSE experiment	GSE5632: AtGenExpress: Developmental series (flowers and pollen)

Microarray experiments to specifically-expressed genes

GSM ID GSM131608 Assay name ATGE_42_D GSE experiment GSE5632: AtGenExpress: Developmental series (flowers and pollen)

GSM ID GSM131608

Assay name ATGE_42_D

GSE experiment GSE5632: AtGenExpress: Developmental series (flowers and pollen)