Microarray experiments to specifically-expressed genes

GSM ID GSM131593
Assay name ATGE_36_C
GSE experiment GSE5632: AtGenExpress: Developmental series (flowers and pollen)

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
782.4100.078.6At4g35670829719glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family proteinF:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMVAO.I.C.G.H.G.
505.3100.0108.6At1g20130838602hydrolase, acting on ester bonds / lipase/ structural constituent of cell wallF:structural constituent of cell wall, lipase activity, hydrolase activity, acting on ester bonds;P:lipid metabolic process;C:unknown;MBOFPVAO.I.C.G.H.G.
403.3100.0238.6At5g42170834222carboxylesterase/ hydrolase, acting on ester bondsF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:unknown;PBOFVMO.I.C.G.H.G.
365.5100.063.3At3g09930820154GDSL-motif lipase/hydrolase family proteinF:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
335.9100.041.2At4g15250827191zinc finger (B-box type) family proteinF:transcription factor activity, zinc ion binding;P:unknown;C:intracellular;POO.I.C.G.H.G.
331.6100.046.6At3g29070822551protein transmembrane transporterF:protein transmembrane transporter activity;P:intracellular protein transport, transport;C:mitochondrion, integral to membrane, membrane;MFPOO.I.C.G.H.G.
329.4100.068.9At3g21920821747pollen coat receptor kinase, putativeF:molecular_function unknown;P:biological_process unknown;C:extracellular region;PO.I.C.G.H.G.
302.1100.081.3At3g22000821760receptor-like protein kinase-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
276.2100.0145.7At3g21970821756receptor-like protein kinase-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
274.9100.041.6At2g16120816109mannitol transporter, putativeF:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMOPAVO.I.C.G.H.G.
266.0100.0427.5At3g28780822510unknown proteinF:molecular_function unknown;P:pollen exine formation;C:endomembrane system;BOMPFVAO.I.C.G.H.G.
263.5100.0133.8At3g08560820003VHA-E2 (VACUOLAR H+-ATPASE SUBUNIT E ISOFORM 2)F:hydrogen-exporting ATPase activity, phosphorylative mechanism, proton-transporting ATPase activity, rotational mechanism;P:ATP synthesis coupled proton transport;C:vacuole, mitochondrial proton-transporting ATP synthase complex;MOFPABO.I.C.G.H.G.
263.1100.093.6At3g18360821365VQ motif-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFBVAO.I.C.G.H.G.
247.4100.0119.7At4g34510829602KCS17 (3-KETOACYL-COA SYNTHASE 17)Encodes KCS17, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).O.I.C.G.H.G.
232.7100.055.8At1g13130837870glycosyl hydrolase family 5 protein / cellulase family proteinF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BPFOO.I.C.G.H.G.
231.5100.088.1At4g12410826850auxin-responsive family proteinF:molecular_function unknown;P:response to auxin stimulus;C:unknown;POO.I.C.G.H.G.
230.7100.0190.6At1g71680843494amino acid transmembrane transporterF:amino acid transmembrane transporter activity;P:amino acid transport;C:membrane;MPFOBVO.I.C.G.H.G.
226.3100.0151.3At1g52570841689PLDALPHA2 (phosphlipase d alpha 2)member of C2-PLD subfamilyO.I.C.G.H.G.
226.1100.0113.0At5g25880832657ATNADP-ME3 (NADP-malic enzyme 3)The malic enzyme (EC 1.1.1.40) encoded by the ATNADP-ME3 is presumably cytosolic and restricted in its expression by both developmental and cell-specific signals.O.I.C.G.H.G.
225.8100.047.5At1g72960843627root hair defective 3 GTP-binding (RHD3) family proteinF:nucleotide binding;P:unknown;C:cellular_component unknown;OFPMBO.I.C.G.H.G.
223.5100.0166.6At1g24400839057LHT2 (LYSINE HISTIDINE TRANSPORTER 2)High-affinity transporter for neutral and acidic amino acids, expressed in tapetum tissue of anthersO.I.C.G.H.G.
222.6100.075.9At2g13680815852CALS5 (CALLOSE SYNTHASE 5)Responsible for the synthesis of callose deposited at the primary cell wall of meiocytes, tetrads and microspores. Required for exine formation during microgametogenesis and for pollen viability. Highest expression in meiocytes, tetrads, microspores and mature pollen.O.I.C.G.H.G.
220.9100.070.0At5g66020836732ATSAC1B (SUPPRESSOR OF ACTIN 1B)Mutants in this gene are unable to express female sterility in response to beta-aminobutyric acid, as wild type plants do. non-consensus AT donor splice site at exon 7, TA donor splice site at exon 10, AT acceptor splice at exon 13.O.I.C.G.H.G.
214.1100.042.0At5g19610832081sec7 domain-containing proteinF:ARF guanyl-nucleotide exchange factor activity;P:regulation of ARF protein signal transduction;C:intracellular;MFOPBO.I.C.G.H.G.
212.4100.0530.5At3g28840822516unknown proteinF:unknown;P:unknown;C:endomembrane system;BOMPFVAO.I.C.G.H.G.
211.2100.061.4At1g68750843206ATPPC4Encodes one of four Arabidopsis phosphoenolpyruvate carboxylase proteins.O.I.C.G.H.G.
211.1100.0137.5At3g19090821444RNA-binding protein, putativeF:RNA binding, nucleotide binding, nucleic acid binding;P:RNA processing;C:ribonucleoprotein complex, nucleus;MPOFBO.I.C.G.H.G.
209.9100.0191.4At2g16750816176protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
206.6100.072.6At2g15535816046LCR10 (Low-molecular-weight cysteine-rich 10)F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
198.3100.065.1At1g08730837394XICClass XI myosin geneO.I.C.G.H.G.
198.0100.0301.4At5g44300834453dormancy/auxin associated family proteinF:molecular_function unknown;P:unknown;C:unknown;PO.I.C.G.H.G.
196.6100.0204.2At5g62850836406AtVEX1 (VEGETATIVE CELL EXPRESSED1)Encodes a protein that is expressed in vegetative cells of pollen.O.I.C.G.H.G.
193.5100.042.9At3g53080824474galactose-binding lectin family proteinF:sugar binding, beta-galactosidase activity;P:lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process;C:endomembrane system, beta-galactosidase complex;POMBO.I.C.G.H.G.
191.2100.076.8At4g17690827489peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBMO.I.C.G.H.G.
191.0100.094.6At1g57550842130hydrophobic protein, putative / low temperature and salt responsive protein, putativeF:unknown;P:hyperosmotic salinity response, response to cold;C:endomembrane system, integral to membrane;BPFMOO.I.C.G.H.G.
188.9100.065.2At1g51410841566cinnamyl-alcohol dehydrogenase, putative (CAD)similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), apple tree, PIR:T16995; NOT a cinnamyl-alcohol dehydrogenaseO.I.C.G.H.G.
187.9100.0171.9At4g16480827346INT4 (INOSITOL TRANSPORTER 4)Encodes a high affinity H+:myo-inositol symporter. The only other compound shown to be transported was pinitol, a methylated derivative of myo-inositol.O.I.C.G.H.G.
184.6100.084.8At1g26320839174NADP-dependent oxidoreductase, putativeF:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:response to oxidative stress;C:unknown;BOMFPAO.I.C.G.H.G.
183.4100.0158.6At4g02140827460unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PO.I.C.G.H.G.
183.1100.0394.5At4g11760826782LCR17 (Low-molecular-weight cysteine-rich 17)Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.O.I.C.G.H.G.
172.3100.0136.4At5g17480831614APC1 (ARABIDOPSIS POLLEN CALCIUM-BINDING PROTEIN 1)F:calcium ion binding;P:biological_process unknown;C:cytoplasm;MPFOBO.I.C.G.H.G.
168.5100.049.0At3g03080821128NADP-dependent oxidoreductase, putativeF:oxidoreductase activity, binding, zinc ion binding, catalytic activity;P:oxidation reduction, metabolic process;C:cellular_component unknown;BOFMPAO.I.C.G.H.G.
164.199.993.2At2g22950816826calcium-transporting ATPase, plasma membrane-type, putative / Ca2+-ATPase, putative (ACA7)F:calmodulin binding, calcium-transporting ATPase activity;P:calcium ion transport, cation transport, metabolic process, ATP biosynthetic process;C:membrane;BMOFPAVO.I.C.G.H.G.
162.299.9275.3At4g13230826939late embryogenesis abundant domain-containing protein / LEA domain-containing proteinF:molecular_function unknown;P:embryonic development ending in seed dormancy;C:unknown;PMBOFO.I.C.G.H.G.
161.699.934.8At1g07850837300transferase, transferring glycosyl groupsF:transferase activity, transferring glycosyl groups;P:N-terminal protein myristoylation;C:chloroplast;MPFOO.I.C.G.H.G.
160.599.984.5At1g54560841898XIEmember of Myosin-like proteinsO.I.C.G.H.G.
160.299.935.8At3g21960821754-F:unknown;P:unknown;C:endomembrane system;PO.I.C.G.H.G.
156.199.945.4At5g02720831821unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
155.899.974.6At4g10440826636dehydration-responsive family proteinF:unknown;P:unknown;C:unknown;PBOAO.I.C.G.H.G.
154.899.9335.7At1g80660844405AHA9F:hydrogen-exporting ATPase activity, phosphorylative mechanism;P:proton transport;C:plasma membrane;BMOFPAVO.I.C.G.H.G.
151.499.966.5At2g15340816025glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBFOPAO.I.C.G.H.G.
151.099.929.6At3g27440822365uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putativeF:uracil phosphoribosyltransferase activity, kinase activity, phosphotransferase activity, alcohol group as acceptor, ATP binding;P:biosynthetic process, metabolic process;C:cellular_component unknown;BOMPFAVO.I.C.G.H.G.
150.199.966.7At3g17720821040pyridoxal-dependent decarboxylase family proteinF:pyridoxal phosphate binding, carboxy-lyase activity, catalytic activity, glutamate decarboxylase activity;P:amino acid metabolic process, carboxylic acid metabolic process, glutamate metabolic process;C:unknown;BFPAOMO.I.C.G.H.G.
145.899.9265.8At5g09550830814RAB GDP-dissociation inhibitorF:RAB GDP-dissociation inhibitor activity;P:regulation of GTPase activity, protein transport;C:cellular_component unknown;MFOPBO.I.C.G.H.G.
143.899.928.9At5g03600831781GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:unknown;PBOFMO.I.C.G.H.G.
143.299.9116.8At1g63060842609unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PO.I.C.G.H.G.
142.999.955.3At2g33670817932MLO5 (MILDEW RESISTANCE LOCUS O 5)A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO5 belongs to the clade III, with AtMLO7, AtMLO8, AtMLO9, and AtMLO10. The gene is expressed during seedling growth, in cotyledon vascular system, and in stigma, anther and pollen grains; it was not expressed in rosette leaves, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).O.I.C.G.H.G.
139.599.9217.9At1g23240838933caleosin-related family proteinF:lipase activity, calcium ion binding;P:unknown;C:extracellular region;PFOO.I.C.G.H.G.
138.199.9122.2At1g26480839189GRF12 (GENERAL REGULATORY FACTOR 12)14-3-3 protein GF14iota (grf12)O.I.C.G.H.G.
137.799.927.1At1g22150838820SULTR1sulfate transporter Sultr1;3O.I.C.G.H.G.
135.699.955.8At5g25550832630leucine-rich repeat family protein / extensin family proteinF:structural constituent of cell wall, protein binding;P:biological_process unknown;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
134.699.9118.8At3g17630821030ATCHX19 (CATION/H+ EXCHANGER 19)member of Putative Na+/H+ antiporter familyO.I.C.G.H.G.
134.399.982.9At3g51070824271dehydration-responsive protein-relatedF:unknown;P:biological_process unknown;C:unknown;MOBFPVAO.I.C.G.H.G.
134.099.919.3At3g23350821916-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
133.599.9110.2At3g05960819766STP6 (SUGAR TRANSPORTER 6)Encodes a hexose sugar transporter that is expressed in pollen. STP6 may play a role in providing sugars during late pollen maturation or pollen tube germination.O.I.C.G.H.G.
132.299.9244.2At2g28355817383LCR5 (Low-molecular-weight cysteine-rich 5)F:molecular_function unknown;P:defense response;C:endomembrane system;PO.I.C.G.H.G.
131.099.941.8At5g03250831894phototropic-responsive NPH3 family proteinF:protein binding, signal transducer activity;P:response to light stimulus;C:cellular_component unknown;PMO.I.C.G.H.G.
129.999.9122.8At1g04670839451unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PAFO.I.C.G.H.G.
128.199.9170.9At1g22760838882PAB3 (POLY(A) BINDING PROTEIN 3)Putative poly(A) binding protein May there fore function in posttranscriptional regulation, including mRNA turnover and translational initiation. Expression detected only in floral organs.O.I.C.G.H.G.
127.899.929.7At2g47670819380invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
127.199.9280.4At1g52680841700late embryogenesis abundant protein-related / LEA protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
127.099.9384.9At2g07560815329AHA6 (Arabidopsis H(+)-ATPase 6)F:ATPase activity;P:cation transport, metabolic process, ATP biosynthetic process;C:plasma membrane, membrane;BMOFPAVO.I.C.G.H.G.
126.899.9117.2At2g13570815843NF-YB7 (NUCLEAR FACTOR Y, SUBUNIT B7)F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus, intracellular;MOPFO.I.C.G.H.G.
125.999.933.2At3g22360821805AOX1Bencodes an alternative oxidase whose expression is limited to flowers and floral buds.O.I.C.G.H.G.
125.899.9166.0At2g29790817529-Encodes a Maternally expressed gene (MEG) family protein [pseudogene]O.I.C.G.H.G.
125.399.9238.1At4g01470828051TIP1Encodes AtTIP1;3, functions as water and urea channels in pollen.O.I.C.G.H.G.
124.299.984.1At3g51490824312TMT3 (TONOPLAST MONOSACCHARIDE TRANSPORTER3)F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, nucleoside transmembrane transporter activity;P:in 6 processes;C:plant-type vacuole membrane, membrane;BFMPOAO.I.C.G.H.G.
124.099.933.8At1g23590838969unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
123.399.992.0At3g07830819974polygalacturonase, putative / pectinase, putativeF:polygalacturonase activity;P:carbohydrate metabolic process;C:plant-type cell wall;FPBOMAO.I.C.G.H.G.
123.199.9155.5At1g73630843697calcium-binding protein, putativeF:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MFPOBO.I.C.G.H.G.
122.899.9119.0At1g61110842404anac025 (Arabidopsis NAC domain containing protein 25)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;POO.I.C.G.H.G.
121.799.911.2At1g05577837062unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
119.799.935.7At2g30290817579vacuolar sorting receptor, putativeF:calcium ion binding;P:protein targeting to vacuole;C:integral to plasma membrane, Golgi transport complex;MOPBAO.I.C.G.H.G.
117.999.928.9At3g01020821316ISU2 (ISCU-LIKE 2)Encodes a mitochondrial protein similar to E.coli IscU. In bacteria, IscU is a scaffold protein accepting sulfur and iron to build a transient Fe-S cluster,which is subsequently transferred to a target apoprotein.O.I.C.G.H.G.
117.299.9113.7At5g51030835176short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAVO.I.C.G.H.G.
116.499.918.1At2g30240817574ATCHX13Encodes a plasma membrane localized potassium transporter.O.I.C.G.H.G.
115.899.9267.9At4g29340829055PRF4 (PROFILIN 4)Profilin is a low-molecular weight, actin monomer-binding protein that regulates the organization of actin cytoskeleton in eukaryotes, including higher plants. PRF4 and PRF5 are late pollen-specific and are not detectable in other cell types of the plant body including microspores and root hairs. Immunocytochemical studies at the subcellular level reveal that both the constitutive and pollen-specific profilins are abundant in the cytoplasm. In vegetative cell types, such as root apical cells, profilins showed localization to nuclei in addition to the cytoplasmic staining.O.I.C.G.H.G.
115.199.935.7At3g22650821836CEG (CEGENDUO)F:molecular_function unknown;P:response to auxin stimulus, lateral root formation;C:cellular_component unknown;POO.I.C.G.H.G.
115.099.955.5At2g19330816450leucine-rich repeat family proteinF:protein binding;P:biological_process unknown;C:chloroplast;MPBOFAVO.I.C.G.H.G.
114.599.960.4At5g20810832204auxin-responsive protein, putative / small auxin up RNA (SAUR_B)F:calmodulin binding;P:response to auxin stimulus;C:peroxisome;POO.I.C.G.H.G.
113.799.971.4At2g01330814661transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFBOPAO.I.C.G.H.G.
111.699.948.2At4g11030826704long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putativeF:catalytic activity;P:fatty acid biosynthetic process;C:unknown;BOMFPAVO.I.C.G.H.G.
110.999.9112.4At5g19600832080SULTR3Encodes sulfate transporter Sultr3;5.O.I.C.G.H.G.
110.499.976.9At5g14670831319ATARFA1B (ADP-ribosylation factor A1B)A member of ARF GTPase family. Arabidopsis has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to ADP-ribosylation factor DcARF1 (GI:965483) (Daucus carota), other ARFs and ARF-like proteins. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct.O.I.C.G.H.G.
109.199.9118.7At3g22740821845HMT3homocysteine S-methyltransferase (HMT3)O.I.C.G.H.G.
107.799.920.1At1g32250840117calmodulin, putativeF:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MFPOBO.I.C.G.H.G.
107.699.943.6At3g52810824447PAP21 (PURPLE ACID PHOSPHATASE 21)F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBMOFAO.I.C.G.H.G.
106.099.954.9At3g46750823828unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVAO.I.C.G.H.G.
105.199.9380.5At5g53820835463unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
104.899.982.7At4g25950828701VATG3 (vacuolar ATP synthase G3)V-ATPase G-subunit like proteinO.I.C.G.H.G.



Back to the CoP portal site

Back to the KAGIANA project homepage