Microarray experiments to specifically-expressed genes

GSM ID GSM131579
Assay name ATGE_32_A2
GSE experiment GSE5632: AtGenExpress: Developmental series (flowers and pollen)

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
180.1100.096.7At3g52160824381KCS15 (3-KETOACYL-COA SYNTHASE 15)Encodes KCS15, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).O.I.C.G.H.G.
167.2100.0137.0At1g61070842399LCR66 (LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 66)Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.O.I.C.G.H.G.
161.299.9166.0At4g28395828956ATA7related to lipid transfer proteinsO.I.C.G.H.G.
146.299.935.7At4g29250829046transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO.I.C.G.H.G.
144.499.9128.2At5g16960831559NADP-dependent oxidoreductase, putativeF:oxidoreductase activity, binding, zinc ion binding, catalytic activity;P:response to oxidative stress;C:unknown;BOMFPAO.I.C.G.H.G.
142.899.979.0At1g74540843795CYP98A8member of CYP98AO.I.C.G.H.G.
142.799.9102.9At1g13140837871CYP86C3member of CYP86CO.I.C.G.H.G.
130.599.981.7At5g13380831179auxin-responsive GH3 family proteinF:unknown;P:response to auxin stimulus;C:cellular_component unknown;OBPMFO.I.C.G.H.G.
120.499.944.0At1g71160843456KCS7 (3-KETOACYL-COA SYNTHASE 7)Encodes KCS7, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).O.I.C.G.H.G.
116.599.996.3At4g14815827138protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:anchored to membrane;PO.I.C.G.H.G.
112.499.969.0At2g19070816424SHT (SPERMIDINE HYDROXYCINNAMOYL TRANSFERASE)encodes a protein whose sequence is similar to anthranilate N-hydroxycinnamoyl/benzoyltransferase from Dianthus caryophyllus (gi:2239091)O.I.C.G.H.G.
105.799.9221.1At1g67990843127TSM1Encodes a tapetum-specific O-methyltransferase. In vitro enzyme assay indicated activity with caffeoyl-CoA, caffeoyl glucose, chlorogenic acid and polyamine conjugates. RNAi mutants had impaired silique development and seed setting.O.I.C.G.H.G.
104.099.998.1At1g20120838601family II extracellular lipase, putativeF:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMAVO.I.C.G.H.G.
95.599.997.2At5g48210834874unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
90.299.943.3At1g20150838605subtilase family proteinF:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAMO.I.C.G.H.G.
88.899.9115.7At1g02813839360unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;POO.I.C.G.H.G.
87.299.963.5At5g65205836644short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAVO.I.C.G.H.G.
77.099.9240.7At1g68875843220unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
76.299.9261.6At1g75940843927ATA27encodes a protein similar to the BGL4 beta-glucosidase from Brassica napus. The ATA27 protein is predicted to have an ER retention signal and an acidic isoelectric point, suggesting that it may be localized to the ER lumen.O.I.C.G.H.G.
72.499.931.2At1g21540838755AMP-binding protein, putativeF:catalytic activity;P:metabolic process;C:unknown;BOMFPAVO.I.C.G.H.G.
70.899.9172.8At1g33430840236galactosyltransferase family proteinF:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:pollen exine formation;C:endomembrane system, membrane;MPOO.I.C.G.H.G.
70.799.990.3At1g61110842404anac025 (Arabidopsis NAC domain containing protein 25)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;POO.I.C.G.H.G.
67.699.9268.2At3g51590824322LTP12 (LIPID TRANSFER PROTEIN 12)Encodes a member of the lipid transfer protein family. Proteins of this family are generally small (~9 kD), basic, expressed abundantly and contain eight Cys residues. The proteins can bind fatty acids and acylCoA esters and can transfer several different phospholipids. They are localized to the cell wall. The LTP12 promoter is active exclusively in the tapetum during the uninucleate microspore and bicellular pollen stages. Predicted to be a member of PR-14 pathogenesis-related protein family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.O.I.C.G.H.G.
66.599.866.3At1g75920843925family II extracellular lipase 5 (EXL5)F:lipase activity, carboxylesterase activity, acyltransferase activity;P:sexual reproduction;C:extracellular region;PBFOMO.I.C.G.H.G.
64.799.823.2At1g26710839212unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PO.I.C.G.H.G.
64.699.8194.1At1g75910843924EXL4member of Lipase proteinsO.I.C.G.H.G.
64.299.820.2At5g49070834966KCS21 (3-KETOACYL-COA SYNTHASE 21)Encodes KCS21, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).O.I.C.G.H.G.
62.199.836.5At3g23840821967transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:chloroplast thylakoid membrane;PFBO.I.C.G.H.G.
58.899.846.9At1g74550843796CYP98A9member of CYP98AO.I.C.G.H.G.
55.499.826.8At1g23560838966unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
54.999.8160.7At3g25050822096XTH3 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 3)encodes a xyloglucan endotransglucosylase/hydrolase. Higher expression in flowers and in response to IAA treatment.O.I.C.G.H.G.
53.199.872.1At1g12570837814glucose-methanol-choline (GMC) oxidoreductase family proteinF:aldehyde-lyase activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding;P:cellular alcohol metabolic process;C:endomembrane system;OBFMPVAO.I.C.G.H.G.
51.699.898.8At4g16590827360ATCSLA01encodes a gene similar to cellulose synthaseO.I.C.G.H.G.
48.399.836.4At3g23770821959glycosyl hydrolase family 17 proteinF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFOO.I.C.G.H.G.
46.899.8457.6At1g66850843003protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
46.199.878.2At2g03740814901late embryogenesis abundant domain-containing protein / LEA domain-containing proteinF:molecular_function unknown;P:embryonic development ending in seed dormancy;C:unknown;PBMOFAO.I.C.G.H.G.
45.999.853.4At4g00040828224chalcone and stilbene synthase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity;P:phenylpropanoid biosynthetic process, biosynthetic process, metabolic process;C:unknown;PBOFO.I.C.G.H.G.
45.499.873.0At1g30020839881unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
43.899.893.1At4g37900829946glycine-rich proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;BMPOFVAO.I.C.G.H.G.
42.299.887.8At2g03850814911late embryogenesis abundant domain-containing protein / LEA domain-containing proteinF:molecular_function unknown;P:embryonic development ending in seed dormancy;C:unknown;PBOMFAO.I.C.G.H.G.
41.999.826.0At1g75790843912sks18 (SKU5 Similar 18)F:pectinesterase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOAO.I.C.G.H.G.
40.599.862.4At3g11980820372MS2 (MALE STERILITY 2)Similar to fatty acid reductases.O.I.C.G.H.G.
39.699.878.2At2g46720819284KCS13 (3-KETOACYL-COA SYNTHASE 13)Encodes KCS13, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).O.I.C.G.H.G.
38.099.859.8At5g16920831555-F:molecular_function unknown;P:unknown;C:endomembrane system;POO.I.C.G.H.G.
37.099.798.1At1g58430842212RXF26Encodes an anther-specific proline-rich protein.O.I.C.G.H.G.
36.999.793.2At1g06260837137cysteine proteinase, putativeF:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:endomembrane system;MOPVBAFO.I.C.G.H.G.
32.399.742.6At1g23570838967unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
32.299.7180.3At2g04570814999GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOMO.I.C.G.H.G.
31.799.755.6At1g764708439803-beta-hydroxy-delta5-steroid dehydrogenase/ binding / catalytic/ cinnamoyl-CoA reductaseF:3-beta-hydroxy-delta5-steroid dehydrogenase activity, binding, cinnamoyl-CoA reductase activity, catalytic activity;P:lignin biosynthetic process, steroid biosynthetic process, metabolic process;C:endomembrane system;OBPFMAVO.I.C.G.H.G.
31.699.766.6At1g24070839019ATCSLA10encodes a gene similar to cellulose synthaseO.I.C.G.H.G.
30.899.750.0At3g26125822212CYP86C2encodes a protein with cytochrome P450 domainO.I.C.G.H.G.
30.899.726.5At1g13150837873CYP86C4member of CYP86CO.I.C.G.H.G.
30.199.727.1At1g72280843560AERO1 (Arabidopsis endoplasmic reticulum oxidoreductins 1)endoplasmic reticulum oxidoreductinO.I.C.G.H.G.
29.599.712.6At5g62320836353ATMYB99 (MYB DOMAIN PROTEIN 99)Encodes a putative transcription factor (MYB99).O.I.C.G.H.G.
29.299.724.2At3g57620824931glyoxal oxidase-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BFPOMO.I.C.G.H.G.
29.199.755.1At3g59530825122strictosidine synthase family proteinF:strictosidine synthase activity;P:alkaloid biosynthetic process, pollen exine formation;C:endomembrane system;BPMOFAO.I.C.G.H.G.
28.799.719.0At4g00870827990basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFOO.I.C.G.H.G.
28.399.765.1At2g42990818901GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
28.099.786.6At1g78960844236ATLUP2Encodes a multifunctional 2-3-oxidosqualene (OS)-triterpene cyclase that can cyclize OS into lupeol, alpha- and beta-amyrin.O.I.C.G.H.G.
26.999.775.8At3g10570820222CYP77A6member of CYP77AO.I.C.G.H.G.
26.899.757.7At1g68540843183oxidoreductase family proteinF:coenzyme binding, oxidoreductase activity, binding, catalytic activity;P:cellular metabolic process, metabolic process;C:cellular_component unknown;BOPFMAVO.I.C.G.H.G.
26.699.778.6At3g18850821418LPAT5F:acyltransferase activity;P:metabolic process;C:unknown;MBOFPVO.I.C.G.H.G.
26.599.723.5At3g04960819656-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVO.I.C.G.H.G.
26.099.7103.6At5g07230830614protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
26.099.782.2At1g69120843244AP1 (APETALA1)Floral homeotic gene encoding a MADS domain protein homologous to SRF transcription factors. Specifies floral meristem and sepal identity. Required for the transcriptional activation of AGAMOUS. Interacts with LEAFY.Binds to promoter and regulates the expression of flowering time genes SVP, SOC1 and AGL24.O.I.C.G.H.G.
25.899.7154.0At5g07560830649GRP20 (GLYCINE-RICH PROTEIN 20)Lipid-binding oleosins, glycine-rich protein.O.I.C.G.H.G.
25.599.7369.4At2g20870816620cell wall protein precursor, putativeF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPMFO.I.C.G.H.G.
25.199.617.4At2g18420816357-Encodes a Gibberellin-regulated GASA/GAST/Snakin family proteinO.I.C.G.H.G.
24.999.620.8At3g55710824737UDP-glucoronosyl/UDP-glucosyl transferase family proteinF:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:endomembrane system;PMVBOFO.I.C.G.H.G.
24.899.685.8At1g11850837732unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBPOFVAO.I.C.G.H.G.
24.599.6305.5At5g07550830648GRP19 (GLYCINE-RICH PROTEIN 19)member of Oleosin-like protein familyO.I.C.G.H.G.
24.299.628.1At1g25510839137aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PMFOO.I.C.G.H.G.
23.999.635.7At5g07520830645GRP18 (GLYCINE-RICH PROTEIN 18)encodes a glycine-rich protein that is expressed only in flowers during a specific developmental stage (flower stage 12).O.I.C.G.H.G.
23.899.659.5At1g02190839541CER1 protein, putativeF:oxidoreductase activity, iron ion binding, catalytic activity;P:oxidation reduction, fatty acid biosynthetic process;C:endoplasmic reticulum;BOPFMVO.I.C.G.H.G.
23.899.643.7At1g28375839734unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
23.399.619.2At1g32780840172alcohol dehydrogenase, putativeF:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:oxidation reduction, metabolic process;C:unknown;BOPFMAVO.I.C.G.H.G.
23.299.678.7At5g07990830693TT7 (TRANSPARENT TESTA 7)Required for flavonoid 3' hydroxylase activity.O.I.C.G.H.G.
23.199.6342.2At3g15400820779ATA20Encodes a protein with novel repeat sequences and a glycine-rich domain which has a 53% identity to GRP1, a petunia glycine-rich cell wall protein.O.I.C.G.H.G.
23.099.620.8At3g43920823508ribonuclease III family proteinEncodes a ribonuclease III family protein that is required for endogenous RDR2-dependent siRNA (but not miRNA) formation.O.I.C.G.H.G.
22.499.613.1At1g06990837209GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
22.099.640.9At3g20450821590-F:molecular_function unknown;P:intracellular protein transport;C:endomembrane system, integral to membrane, endoplasmic reticulum;PO.I.C.G.H.G.
21.999.652.7At5g61605836282unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
21.899.681.1At1g24260839040SEP3 (SEPALLATA3)Member of the MADs box transcription factor family. SEP3 is redundant with SEP1 and 2. Flowers of SEP1/2/3 triple mutants show a conversion of petals and stamens to sepals.SEP3 forms heterotetrameric complexes with other MADS box family members and binds to the CArG box motif.O.I.C.G.H.G.
21.899.626.1At3g11000820271-F:unknown;P:unknown;C:endomembrane system;POBFMVO.I.C.G.H.G.
21.699.639.3At2g21220816659auxin-responsive protein, putativeF:calmodulin binding;P:response to auxin stimulus;C:unknown;POO.I.C.G.H.G.
21.599.652.3At1g10060837542branched-chain amino acid aminotransferase 1 / branched-chain amino acid transaminase 1 (BCAT1)encodes a mitochondrial branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant.O.I.C.G.H.G.
21.299.651.2At4g21590828245ENDO3 (endonuclease 3)Encodes a putative endonuclease but no demonstrable endonuclease activity, either towards single stranded DNA or mismatches, has been seen in vitro. Activated by AGAMOUS in a cal-1, ap1-1 background. Expressed in the floral meristem and during stamen development.O.I.C.G.H.G.
20.999.632.3At3g15270820758SPL5 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 5)Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR.O.I.C.G.H.G.
20.899.6115.7At1g47980841216unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBO.I.C.G.H.G.
20.799.650.5At4g22753828373SMO1-3 (STEROL 4-ALPHA METHYL OXIDASE 1-3)Encodes a member of the SMO1 family of sterol 4alpha-methyl oxidases.O.I.C.G.H.G.
20.699.613.2At4g04760825812sugar transporter family proteinF:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOAO.I.C.G.H.G.
20.599.6257.6At1g52030841632MBP2 (MYROSINASE-BINDING PROTEIN 2)Similar to myrosinase binding proteins which may be involved in metabolizing glucosinolates and forming defense compounds to protect against herbivory. Also similar to lectins and other agglutinating factors. Expressed only in flowers.O.I.C.G.H.G.
20.399.615.0At3g06160819790transcriptional factor B3 family proteinF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;POO.I.C.G.H.G.
20.099.620.1At3g13220820512ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:unknown;C:membrane;BOMAFPVO.I.C.G.H.G.
19.999.621.1At2g16910816194AMS (ABORTED MICROSPORES)Sporophytic male sterile; MYC Transcription FactorO.I.C.G.H.G.
19.899.6107.2At1g75930843926EXL6member of Lipase proteinsO.I.C.G.H.G.
19.699.649.3At3g57810824950OTU-like cysteine protease family proteinF:cysteine-type peptidase activity;P:biological_process unknown;C:unknown;MPOFO.I.C.G.H.G.
19.699.640.9At5g43270834345SPL2 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2)member of the SPL (squamosa-promoter binding protein-like) gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. The genes are characterized by the presence of the SBP-box, which encodes a protein domain, theO.I.C.G.H.G.
19.599.6186.9At1g72970843628HTH (HOTHEAD)Originally identified as a mutation that causes floral organs to fuse together. About 10-20% of mutants also have defects in ovules. Mutants have reduced fertility most likely as because of fusions that pistil emergence. The protein has similarity to the mandelonitrile lyase family of FAD containing oxidoreductases and is predicted to be secreted (SignalP).It is expressed in all tissue layers of roots, inflorescences, stems, leaves, and flowers and is also expressed in siliques. Expression is highest in inflorescence and flower tissue.Transmission of mutant alleles to the progeny shows non mendelian segregation- a percentage of mutant alleles revert back to a previous parental (e.g. grandparental) wild type allele. It has been suggested that an RNA template driven or other extra-DNA genomic mechanism may be responsible for the non-mendelian inheritance of HTH. Reversion events in alleles at other loci have also been observed to occur in plants with an hth mutant background indicating a genome wide effect.O.I.C.G.H.G.
19.399.647.2At1g75030843841ATLP-3encodes a PR5-like proteinO.I.C.G.H.G.



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