Microarray experiments to specifically-expressed genes

GSM ID GSM131575
Assay name ATGE_99_C
GSE experiment GSE5631: AtGenExpress: Developmental series (roots)

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
120.299.977.6At4g14060827042major latex protein-related / MLP-relatedF:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;PO.I.C.G.H.G.
103.499.9237.2At5g48010834852THAS1 (THALIANOL SYNTHASE 1)Encodes an oxidosqualene cyclase involved in the biosynthesis of thalianol, a tricyclic triterpenoid of unknown function. Overexpression of THAS leads to dwarfing in the aerial tissues of Arabidopsis plants, but increases their root length. THAS is part of a small operon-like cluster of genes (with At5g48000 (THAH) and At5g47990 (THAD)) involved in thalianol metabolism.O.I.C.G.H.G.
91.499.9164.1At5g37990833778S-adenosylmethionine-dependent methyltransferase/ methyltransferaseF:S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity;P:biological_process unknown;C:endomembrane system;POBMFO.I.C.G.H.G.
70.199.997.5At5g38030833782MATE efflux family proteinF:antiporter activity, drug transporter activity, transporter activity;P:response to nematode;C:membrane;BOPFAMO.I.C.G.H.G.
67.699.9101.6At1g141208379712-oxoglutarate-dependent dioxygenase, putativeF:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;POBFMO.I.C.G.H.G.
67.199.836.3At3g46700823823UDP-glycosyltransferase/ transferase, transferring glycosyl groupsF:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBVOFO.I.C.G.H.G.
66.399.8159.1At4g29270829048acid phosphatase class B family proteinF:acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBOO.I.C.G.H.G.
56.699.8186.3At1g64590842767short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAO.I.C.G.H.G.
55.599.867.6At1g05000839348tyrosine specific protein phosphatase family proteinF:phosphatase activity, protein tyrosine phosphatase activity, phosphoprotein phosphatase activity;P:dephosphorylation;C:cellular_component unknown;FPOBMO.I.C.G.H.G.
54.099.840.3At1g35250840414thioesterase family proteinF:hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity;P:biological_process unknown;C:cellular_component unknown;BOPAO.I.C.G.H.G.
46.699.8212.2At5g59520836071ZIP2encodes a metal ion transporter whose expression is regulated by copper.O.I.C.G.H.G.
46.299.896.5At3g21520821706unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
45.599.8111.6At2g46750819288FAD-binding domain-containing proteinF:oxidoreductase activity, D-arabinono-1,4-lactone oxidase activity, FAD binding, catalytic activity;P:unknown;C:membrane;BOPFMAO.I.C.G.H.G.
43.199.831.2At4g13280826958TPS12 (TERPENOID SYNTHASE 12)Catalyzes the conversion of farnesyl diphosphate to (Z)-gamma-bisabolene and the additional minor products E-nerolidol and alpha-bisabolol. Expressed in cortex and sub-epidermal layers of roots, leaf hydathodes and flower stigmata. Induced by wounding.O.I.C.G.H.G.
43.099.8166.3At5g48000834851CYP708A2Encodes a member of the CYP708A family of cytochrome P450 enzymes. THAH appears to add a hydroxyl group to the triterpene thalianol. thah1 mutants have an elevated accumulation of thalianol. thah1-1 mutants have longer roots than wild type plants. Thalian-diol and desaturated thalian-diol are lost from the root extracts of thah1-1 mutants. Overexpression of the sequence from At5g48000.1 rescues the thah1-1 mutant phenotype (Field 2008); it is unknown whether the shorter sequences associated with other gene models would provide functional complementation.O.I.C.G.H.G.
41.899.846.9At1g18870838468ICS2 (ISOCHORISMATE SYNTHASE 2)Encodes a protein with isochorismate synthase activity involved in phylloquinone biosynthesis. Mutant studies of this gene's function suggest that its function is redundant with that of ICS1 (AT1G7410).O.I.C.G.H.G.
40.599.8182.2At3g58550825024protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:anchored to membrane;PO.I.C.G.H.G.
39.599.857.7At4g05200825868protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
39.299.8106.3At5g38020833781S-adenosyl-L-methionine:carboxyl methyltransferase family proteinencodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus)O.I.C.G.H.G.
36.499.7152.1At3g09220820078LAC7 (laccase 7)putative laccase, a member of laccase family of genes (17 members in Arabidopsis).O.I.C.G.H.G.
36.399.722.3At5g36140833611CYP716A2member of CYP716AO.I.C.G.H.G.
35.599.728.5At3g45680823710proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport, response to nematode;C:membrane;PBMOFO.I.C.G.H.G.
34.399.746.4At4g13860827020glycine-rich RNA-binding protein, putativeF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBAO.I.C.G.H.G.
33.199.7175.1At5g66690836802UGT72E2UGT72E2 is an UDPG:coniferyl alcohol glucosyltransferase which glucosylates sinapyl- and coniferyl aldehydes as well as sinapyl- and coniferyl alcohol. The enzyme is thought to be involved in lignin metabolism. A knockdown mutant line (72E2KD) was obtained using RNAi silencing. A twofold reduction in coniferyl alcohol 4-O-glucoside and sinapyl alcohol 4-O-glucoside was detected in this line compared to wildtype. In comparison, both knockout and knockdown lines of UGT72E1 and UGT72E3, respectively, failed to display the same reduction in phenylpropanoid 4-O-glucosides.O.I.C.G.H.G.
32.899.736.9At5g42580834265CYP705A12a member of the cytochrome P450 familyO.I.C.G.H.G.
32.599.746.1At1g72140843545proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport, response to nematode;C:plasma membrane, membrane;BPMOFO.I.C.G.H.G.
31.699.768.7At5g63560836475transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO.I.C.G.H.G.
30.899.7156.7At2g18370816352protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinPredicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.O.I.C.G.H.G.
30.199.771.4At2g01880814719PAP7 (PURPLE ACID PHOSPHATASE 7)F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:unknown;C:endomembrane system;MOBPFO.I.C.G.H.G.
28.899.7278.5At2g05440815093glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVAO.I.C.G.H.G.
27.899.780.6At1g21100838706O-methyltransferase, putativeF:methyltransferase activity, O-methyltransferase activity, protein dimerization activity;P:unknown;C:cytosol;PBFOMO.I.C.G.H.G.
27.099.765.6At3g45710823713proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport;C:membrane;PBMOFAO.I.C.G.H.G.
26.499.720.6At4g21230827872protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
26.399.7103.7At2g01890814720PAP8 (PURPLE ACID PHOSPHATASE 8)Encodes a purple acid phosphatase (PAP) belonging to the low molecular weight plant PAP group.O.I.C.G.H.G.
25.999.7145.8At1g55020841944LOX1lipoxygenase, a defense gene conferring resistance Xanthomonas campestrisO.I.C.G.H.G.
25.899.734.9At4g13420826973HAK5 (HIGH AFFINITY K+ TRANSPORTER 5)Encodes a protein of the KUP/HAK/KT potassium channel class that is upregulated in the roots by K levels.O.I.C.G.H.G.
25.899.718.7At3g49760824138AtbZIP5 (Arabidopsis thaliana basic leucine-zipper 5)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMOFO.I.C.G.H.G.
25.399.627.8At5g595308360722-oxoglutarate-dependent dioxygenase, putativeF:transferase activity, transferring glycosyl groups;P:unknown;C:unknown;POBFMO.I.C.G.H.G.
25.099.690.3At4g19810827725glycosyl hydrolase family 18 proteinF:cation binding, chitinase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall;BMFOVPAO.I.C.G.H.G.
24.599.6102.3At2g18050816317HIS1-3 (HISTONE H1-3)encodes a structurally divergent linker histone whose gene expression is induced by dehydration and ABA.O.I.C.G.H.G.
24.499.6157.5At5g47990834850CYP705A5encodes a member of the CYP705A family of cytochrome P450 enzymes. It appears to catalyze the addition of a double bond to thalian-diol at carbon 15. Reduced levels of THAD expression lead to a build up of thalian-diol in root extracts. thad1-1 mutants also have longer roots than wild type seedlings.O.I.C.G.H.G.
24.399.6144.4At1g18980838479germin-like protein, putativeF:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PBFOO.I.C.G.H.G.
24.399.672.8At3g46900823843COPT2encodes a member of copper transporter family and functionally complements a high affinity copper transporter mutant in yeastO.I.C.G.H.G.
24.299.6226.8At2g43535818955trypsin inhibitor, putativeEncodes a defensin-like (DEFL) family protein.O.I.C.G.H.G.
23.999.636.5At3g26460822251major latex protein-related / MLP-relatedF:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;PO.I.C.G.H.G.
23.799.629.4At1g65510842863unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:endomembrane system;PO.I.C.G.H.G.
23.399.618.3At4g12330826842CYP706A7member of CYP706AO.I.C.G.H.G.
23.299.624.3At1g55240841967unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPO.I.C.G.H.G.
22.599.647.3At1g70880843425Bet v I allergen family proteinF:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;PO.I.C.G.H.G.
22.399.6234.3At5g43350834353PHT1Encodes an inorganic phosphate transporter. Mutants display enhanced arsenic accumulation.O.I.C.G.H.G.
22.399.652.5At4g28940829015catalyticF:catalytic activity;P:nucleoside metabolic process;C:endomembrane system;BPOO.I.C.G.H.G.
21.999.6339.3At2g01530814682MLP329 (MLP-LIKE PROTEIN 329)F:copper ion binding;P:response to biotic stimulus, defense response;C:cellular_component unknown;PO.I.C.G.H.G.
21.499.615.1At4g20230827770terpene synthase/cyclase family proteinF:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;PFOO.I.C.G.H.G.
21.399.6179.9At5g20150832137SPX1 (SPX DOMAIN GENE 1)F:molecular_function unknown;P:cellular response to phosphate starvation, positive regulation of cellular response to phosphate starvation;C:nucleus;FMPOBAO.I.C.G.H.G.
21.299.639.2At4g37010829855caltractin, putative / centrin, putativeF:calcium ion binding;P:biological_process unknown;C:unknown;MFPOBO.I.C.G.H.G.
20.999.613.7At3g59340825103unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;OMBFPAO.I.C.G.H.G.
20.899.6108.1At3g47420823896glycerol-3-phosphate transporter, putative / glycerol 3-phosphate permease, putativeF:sugar:hydrogen symporter activity;P:carbohydrate transport;C:unknown;BFOMAPO.I.C.G.H.G.
20.899.613.9At4g20820827830FAD-binding domain-containing proteinF:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:unknown;FBPOAMO.I.C.G.H.G.
20.599.6161.3At3g09270820083ATGSTU8 (GLUTATHIONE S-TRANSFERASE TAU 8)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).O.I.C.G.H.G.
20.599.668.4At3g26470822252-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
20.599.657.3At5g24090832474acidic endochitinase (CHIB1)F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFBMOO.I.C.G.H.G.
20.399.611.1At5g04370830316NAMT1A member of the Arabidopsis SABATH methyltransferase gene family. Encodes NAMT1, a methyltransferase that methylates nicotinic acid.O.I.C.G.H.G.
20.199.6266.1At3g01420821135DOX1Encodes an alpha-dioxygenase involved in protection against oxidative stress and cell death. Induced in response to Salicylic acid and oxidative stress. Independent of NPR1 in induction by salicylic acid.O.I.C.G.H.G.
20.199.6133.9At1g14960838061major latex protein-related / MLP-relatedF:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;PO.I.C.G.H.G.
20.099.633.4At1g14240837985nucleoside phosphatase family protein / GDA1/CD39 family proteinF:hydrolase activity;P:biological_process unknown;C:cellular_component unknown;MFPOBO.I.C.G.H.G.
19.799.6188.6At4g11310826733cysteine proteinase, putativecysteine proteinase precursor-like proteinO.I.C.G.H.G.
19.799.6109.8At4g36430829795peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to other organism;C:cell wall;PFOBMO.I.C.G.H.G.
19.599.623.2At3g22800821851leucine-rich repeat family protein / extensin family proteinF:structural constituent of cell wall, protein binding;P:unknown;C:endomembrane system;MPBOFVAO.I.C.G.H.G.
19.499.6284.1At3g15950820839NAI2Similar to TSK-associating protein 1 (TSA1), contains 10 EFE repeats, a novel repeat sequence unique to plants. Expressed preferentially in the roots.Protein is localized to ER bodies- an endoplasmic reticulum derived structure. Loss of function mutations lack ER bodies.O.I.C.G.H.G.
19.499.621.9At4g15230827187PDR2 (PLEIOTROPIC DRUG RESISTANCE 2)F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:membrane;BOMAFPVO.I.C.G.H.G.
19.299.670.2At3g06390819813integral membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
19.299.617.8At3g29780822684RALFL27 (ralf-like 27)Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.O.I.C.G.H.G.
18.999.571.5At3g21510821705AHP1 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 1)Encodes AHP1, one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs). AHPs function as redundant positive regulators of cytokinin signaling. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6).O.I.C.G.H.G.
18.999.562.4At5g40510834049-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FBPOAO.I.C.G.H.G.
18.799.513.2At5g61650836287CYCP4The P-type cyclins (CYCPs) share a conserved central region of 100 amino acids ('cyclin box') displaying homology to the corresponding region of the PHO80 cyclin from Saccharomyces cerevisiae and the related G1 cyclins from Trypanosoma cruzi and T. brucei.O.I.C.G.H.G.
18.699.5221.2At1g78000844135SULTR1Encodes a sulfate transporter that can restore sulfate uptake capacity of a yeast mutant lacking sulfate transporter genes.O.I.C.G.H.G.
18.699.537.2At5g24290832496integral membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMFPVAO.I.C.G.H.G.
18.499.528.6At5g06330830521hairpin-responsive protein, putative (HIN1)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
18.499.524.2At3g26330822237CYP71B37putative cytochrome P450O.I.C.G.H.G.
18.399.527.3At3g12520820431SULTR4Encodes a sulfate transporter that in induced under sulfate limitation.O.I.C.G.H.G.
18.199.5102.3At1g22440838850alcohol dehydrogenase, putativeF:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:oxidation reduction, metabolic process;C:cellular_component unknown;BOPFMAVO.I.C.G.H.G.
18.199.541.6At5g63970836518copine-relatedF:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOPVO.I.C.G.H.G.
18.099.520.2At1g24430839059transferase/ transferase, transferring acyl groups other than amino-acyl groupsF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:N-terminal protein myristoylation;C:cellular_component unknown;PFO.I.C.G.H.G.
17.899.5286.8At2g01520814681MLP328 (MLP-LIKE PROTEIN 328)F:copper ion binding;P:response to biotic stimulus, defense response;C:cellular_component unknown;PO.I.C.G.H.G.
17.799.576.0At4g23700828470ATCHX17 (CATION/H+ EXCHANGER 17)member of Putative Na+/H+ antiporter familyO.I.C.G.H.G.
17.799.542.8At4g31730829301GDU1 (GLUTAMINE DUMPER 1)Glutamine dumper1 is a putative transmembrane protein. It is involved in glutamine secretionO.I.C.G.H.G.
17.599.5393.6At3g16450820893jacalin lectin family proteinF:molecular_function unknown;P:response to cold;C:nucleus;POO.I.C.G.H.G.
17.599.572.1At5g20790832202unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
17.499.519.5At1g31120839997KUP10potassium transporterO.I.C.G.H.G.
17.399.551.0At3g49580824120LSU1 (RESPONSE TO LOW SULFUR 1)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
17.399.534.2At3g05400819704sugar transporter, putativeF:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BMFPOAO.I.C.G.H.G.
17.399.533.6At4g35150829667O-methyltransferase family 2 proteinF:methyltransferase activity, O-methyltransferase activity, protein dimerization activity;P:unknown;C:cytosol;PBFMOO.I.C.G.H.G.
17.399.526.5At5g22890832353zinc finger (C2H2 type) family proteinF:transcription factor activity;P:response to chitin, regulation of transcription;C:intracellular;MOPFO.I.C.G.H.G.
17.399.515.4At3g57380824905transferase, transferring glycosyl groupsF:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:cellular_component unknown;PMOBFO.I.C.G.H.G.
17.299.5123.8At1g18880838469proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport;C:membrane;PMBFOO.I.C.G.H.G.
17.299.575.7At1g67030843022ZFP6 (ZINC FINGER PROTEIN 6)Encodes a zinc finger protein containing only a single zinc finger.O.I.C.G.H.G.
17.199.5362.1At4g37410829895CYP81F4member of CYP81FO.I.C.G.H.G.
17.199.5213.3At4g04830825820methionine sulfoxide reductase domain-containing protein / SeIR domain-containing proteinF:peptide-methionine-(S)-S-oxide reductase activity;P:biological_process unknown;C:cellular_component unknown;OBMPFAVO.I.C.G.H.G.
16.999.527.0At2g308408176352-oxoglutarate-dependent dioxygenase, putativeencodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenaseO.I.C.G.H.G.
16.999.524.5At4g33730829515pathogenesis-related protein, putativeF:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOBO.I.C.G.H.G.



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