Microarray experiments to specifically-expressed genes

GSM ID GSM131566
Assay name ATGE_94_C
GSE experiment GSE5631: AtGenExpress: Developmental series (roots)

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
35.499.744.9At2g361203768574DOT1 (DEFECTIVELY ORGANIZED TRIBUTARIES 1)Encodes a glycine rich protein that is involved in leaf vascular patterning. dot1 mutants have an aberrant open-class venation pattern in leaves and cotyledons, as well as several other leaf development defects.O.I.C.G.H.G.
34.299.7166.0At3g25190822112nodulin, putativeF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPFAO.I.C.G.H.G.
31.099.789.3At3g06390819813integral membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
27.599.719.5At1g78990844239transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFBO.I.C.G.H.G.
25.099.6126.2At3g09220820078LAC7 (laccase 7)putative laccase, a member of laccase family of genes (17 members in Arabidopsis).O.I.C.G.H.G.
23.699.6252.3At2g05440815093glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVAO.I.C.G.H.G.
22.699.687.0At4g20390827787integral membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
22.699.677.6At2g44380819045DC1 domain-containing proteinF:unknown;P:unknown;C:unknown;PMOO.I.C.G.H.G.
22.199.659.0At2g04800815024unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PO.I.C.G.H.G.
21.699.6337.1At2g01530814682MLP329 (MLP-LIKE PROTEIN 329)F:copper ion binding;P:response to biotic stimulus, defense response;C:cellular_component unknown;PO.I.C.G.H.G.
21.399.650.7At5g47050834751protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:unknown;C:unknown;MPOVFBAO.I.C.G.H.G.
21.299.629.2At2g24580816994sarcosine oxidase family proteinF:sarcosine oxidase activity;P:tetrahydrofolate metabolic process;C:cellular_component unknown;BOMFAPO.I.C.G.H.G.
20.199.674.3At2g46750819288FAD-binding domain-containing proteinF:oxidoreductase activity, D-arabinono-1,4-lactone oxidase activity, FAD binding, catalytic activity;P:unknown;C:membrane;BOPFMAO.I.C.G.H.G.
20.099.613.4At1g11450837687nodulin MtN21 family proteinF:unknown;P:unknown;C:endomembrane system, membrane;PBOAMO.I.C.G.H.G.
19.999.673.4At3g21510821705AHP1 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 1)Encodes AHP1, one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs). AHPs function as redundant positive regulators of cytokinin signaling. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6).O.I.C.G.H.G.
19.899.6152.9At1g02900839389RALF1 (RAPID ALKALINIZATION FACTOR 1)Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.O.I.C.G.H.G.
19.899.628.7At1g47480841155hydrolaseF:hydrolase activity;P:metabolic process;C:cellular_component unknown;BOPFMAVO.I.C.G.H.G.
19.699.674.5At2g48130819425protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:anchored to membrane;PBOMO.I.C.G.H.G.
19.499.689.1At3g63200825495PLP9 (PATATIN-LIKE PROTEIN 9)F:nutrient reservoir activity;P:metabolic process, lipid metabolic process;C:cellular_component unknown;BPMOFO.I.C.G.H.G.
19.299.648.7At4g28940829015catalyticF:catalytic activity;P:nucleoside metabolic process;C:endomembrane system;BPOO.I.C.G.H.G.
18.899.527.2At5g48290834882heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:cellular_component unknown;POBFO.I.C.G.H.G.
18.799.5134.5At5g59520836071ZIP2encodes a metal ion transporter whose expression is regulated by copper.O.I.C.G.H.G.
18.399.5105.8At1g64590842767short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAO.I.C.G.H.G.
18.199.586.3At5g50760835148auxin-responsive family proteinF:molecular_function unknown;P:response to auxin stimulus;C:unknown;POO.I.C.G.H.G.
18.199.553.6At3g45710823713proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport;C:membrane;PBMOFAO.I.C.G.H.G.
18.099.539.9At4g34138829561UGT73B1 (UDP-glucosyl transferase 73B1)F:quercetin 3-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity, abscisic acid glucosyltransferase activity;P:metabolic process;C:endomembrane system;PMBVOFO.I.C.G.H.G.
17.899.554.2At5g25810832650tny (TINY)encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family (TINY). The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. Ectopic or overexpression of this gene in a Ds tagged line has reduced cell expansion. The expression of this gene is induced by ethylene and light and appears to stimulate cytokinin biosynthesis.O.I.C.G.H.G.
17.299.532.9At4g13860827020glycine-rich RNA-binding protein, putativeF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBAO.I.C.G.H.G.
17.199.592.1At1g15040838069glutamine amidotransferase-relatedF:hydrolase activity;P:glutamine metabolic process;C:cellular_component unknown;BOPAFMO.I.C.G.H.G.
17.199.570.6At2g48140819426EDA4 (embryo sac development arrest 4)F:lipid binding;P:megagametogenesis, lipid transport;C:anchored to membrane;PBMOFVO.I.C.G.H.G.
17.199.555.1At5g44550834482integral membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
16.699.545.0At1g08320837353bZIP family transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMOFO.I.C.G.H.G.
16.699.522.4At1g35250840414thioesterase family proteinF:hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity;P:biological_process unknown;C:cellular_component unknown;BOPAO.I.C.G.H.G.
16.599.569.8At5g37990833778S-adenosylmethionine-dependent methyltransferase/ methyltransferaseF:S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity;P:biological_process unknown;C:endomembrane system;POBMFO.I.C.G.H.G.
16.399.523.7At3g16350820882myb family transcription factorF:transcription factor activity, DNA binding;P:in 7 processes;C:unknown;PMOBFVO.I.C.G.H.G.
16.399.521.2At3g22800821851leucine-rich repeat family protein / extensin family proteinF:structural constituent of cell wall, protein binding;P:unknown;C:endomembrane system;MPBOFVAO.I.C.G.H.G.
15.999.516.2At3g29780822684RALFL27 (ralf-like 27)Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.O.I.C.G.H.G.
15.799.5113.2At4g14010827037RALFL32 (ralf-like 32)Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.O.I.C.G.H.G.
15.699.5204.9At2g21045816639-F:unknown;P:aging;C:unknown;BOPAFMO.I.C.G.H.G.
15.699.568.4At5g58860836003CYP86A1 (CYTOCHROME P450 86 A1)Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed significantly only in root tissue.O.I.C.G.H.G.
15.699.531.0At2g42350818836zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVO.I.C.G.H.G.
15.299.439.0At3g51910824354AT-HSFA7Amember of Heat Stress Transcription Factor (Hsf) familyO.I.C.G.H.G.
15.199.4164.6At2g37750818352unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
14.899.4179.4At4g38080829964hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOVBFAO.I.C.G.H.G.
14.899.493.6At2g23540816886GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOMO.I.C.G.H.G.
14.899.474.1At4g39660830120AGT2 (ALANINE:GLYOXYLATE AMINOTRANSFERASE 2)alanine:glyoxylate aminotransferase 2 homolog (AGT2) mRNA,O.I.C.G.H.G.
14.799.478.0At1g74460843787GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOMO.I.C.G.H.G.
14.799.451.6At4g17800827502DNA-binding protein-relatedF:unknown;P:biological_process unknown;C:cellular_component unknown;PBMOFO.I.C.G.H.G.
14.799.424.4At2g47200819333unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
14.699.4115.6At4g35060829658heavy-metal-associated domain-containing protein / copper chaperone (CCH)-relatedF:metal ion binding;P:metal ion transport;C:cellular_component unknown;PO.I.C.G.H.G.
14.599.4334.0At4g37410829895CYP81F4member of CYP81FO.I.C.G.H.G.
14.399.48.3At1g27620839654transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFBO.I.C.G.H.G.
14.099.4215.2At1g32450840139NRT1.5 (NITRATE TRANSPORTER 1.5)Transmembrane nitrate transporter. Involved in xylem transport of nitrate from root to shoot. Induced in response to nitrate. Not involved in nitrate uptake. expressed in root pericycle cells.O.I.C.G.H.G.
14.099.4179.0At3g57020824869strictosidine synthase family proteinF:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endoplasmic reticulum, vacuole;PMBOFAO.I.C.G.H.G.
14.099.431.6At1g23120838920major latex protein-related / MLP-relatedF:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;PO.I.C.G.H.G.
13.999.415.7At1g13670837928unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
13.899.464.2At2g47890819401zinc finger (B-box type) family proteinF:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;POO.I.C.G.H.G.
13.899.420.9At3g26330822237CYP71B37putative cytochrome P450O.I.C.G.H.G.
13.899.410.4At2g34180817979CIPK13 (CBL-INTERACTING PROTEIN KINASE 13)Encodes CBL-interacting protein kinase 13 (CIPK13).O.I.C.G.H.G.
13.799.441.3At1g74760--O.I.C.G.H.G.
13.699.4346.6At3g16450820893jacalin lectin family proteinF:molecular_function unknown;P:response to cold;C:nucleus;POO.I.C.G.H.G.
13.699.439.7At3g16690820921nodulin MtN3 family proteinF:unknown;P:biological_process unknown;C:endomembrane system, integral to membrane, membrane;PMOO.I.C.G.H.G.
13.599.415.0At1g52250--O.I.C.G.H.G.
13.399.418.5At2g22590816790transferase, transferring glycosyl groupsF:transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBFOVO.I.C.G.H.G.
13.299.496.9At4g19690827713IRT1 (iron-regulated transporter 1)Fe(II) transport protein (IRT1)O.I.C.G.H.G.
13.199.490.9At3g55120824678TT5 (TRANSPARENT TESTA 5)Catalyzes the conversion of chalcones into flavanones. Required for the accumulation of purple anthocyanins in leaves and stems.O.I.C.G.H.G.
13.199.450.9At5g37690833748GDSL-motif lipase/hydrolase family proteinF:lipase activity, hydrolase activity, acting on ester bonds;P:lipid metabolic process;C:endomembrane system;PBFOMO.I.C.G.H.G.
13.099.4200.2At2g17500816256auxin efflux carrier family proteinF:auxin:hydrogen symporter activity;P:auxin polar transport;C:endomembrane system, integral to membrane;PFOBAO.I.C.G.H.G.
13.099.412.4At1g08990837420PGSIP5 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 5)F:transferase activity, transferring glycosyl groups;P:biosynthetic process;C:endomembrane system;PMFVBOO.I.C.G.H.G.
12.999.36.9At1g30080839887glycosyl hydrolase family 17 proteinF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFOO.I.C.G.H.G.
12.899.38.6At4g24180828519-F:molecular_function unknown;P:response to other organism;C:endomembrane system;PMFBOVO.I.C.G.H.G.
12.799.395.6At1g20840838676TMT1 (TONOPLAST MONOSACCHARIDE TRANSPORTER1)The protein encoded by this gene is found in the tonoplast (vacuole membrane) of Arabidopsis cells. The gene is expressed at highest levels in juvenile (sink) and adult (source) leaves, followed by flower tissues.O.I.C.G.H.G.
12.799.370.2At1g75540843890STH2 (SALT TOLERANCE HOMOLOG2)F:transcription factor activity, zinc ion binding;P:unknown;C:intracellular;POMFO.I.C.G.H.G.
12.799.332.4At5g42860834297unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;POFMBO.I.C.G.H.G.
12.699.3229.0At3g15950820839NAI2Similar to TSK-associating protein 1 (TSA1), contains 10 EFE repeats, a novel repeat sequence unique to plants. Expressed preferentially in the roots.Protein is localized to ER bodies- an endoplasmic reticulum derived structure. Loss of function mutations lack ER bodies.O.I.C.G.H.G.
12.699.377.6At1g29280839802WRKY65member of WRKY Transcription Factor; Group II-eO.I.C.G.H.G.
12.699.349.7At4g27860828899integral membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:integral to membrane;POMBFO.I.C.G.H.G.
12.599.3212.2At1g17860838365trypsin and protease inhibitor family protein / Kunitz family proteinF:endopeptidase inhibitor activity;P:biological_process unknown;C:apoplast, cell wall;POO.I.C.G.H.G.
12.599.386.0At5g26740832714unknown proteinF:unknown;P:unknown;C:endomembrane system;MPFOO.I.C.G.H.G.
12.499.354.3At5g43180834336unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBOO.I.C.G.H.G.
12.499.344.0At5g06300830518carboxy-lyaseF:carboxy-lyase activity;P:metabolic process;C:unknown;BOPFMAO.I.C.G.H.G.
12.299.383.9At1g22440838850alcohol dehydrogenase, putativeF:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:oxidation reduction, metabolic process;C:cellular_component unknown;BOPFMAVO.I.C.G.H.G.
12.299.369.2At1g56320842085unknown proteinF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PO.I.C.G.H.G.
12.299.348.4At3g08040819995FRD3 (FERRIC REDUCTASE DEFECTIVE 3)Encodes a member of the MATE (multidrug and toxin efflux family), expressed in roots but not shoots. Mutants accumulate excess iron, manganese and zinc, and express root Fe(III) chelatase activity even under iron sufficiency conditions. FRD3 is likely to function in root xylem loading of an iron chelator or other factor necessary for efficient iron uptake out of the xylem or apoplastic space and into leaf cells.O.I.C.G.H.G.
12.299.312.4At2g29740817524UGT71C2 (UDP-GLUCOSYL TRANSFERASE 71C2)F:quercetin 3'-O-glucosyltransferase activity, quercetin 3-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOFO.I.C.G.H.G.
12.199.329.2At5g18860832004inosine-uridine preferring nucleoside hydrolase family proteinF:hydrolase activity;P:biological_process unknown;C:cell wall;BOMPFAO.I.C.G.H.G.
12.099.352.9At1g21100838706O-methyltransferase, putativeF:methyltransferase activity, O-methyltransferase activity, protein dimerization activity;P:unknown;C:cytosol;PBFOMO.I.C.G.H.G.
12.099.348.6At2g40900818687nodulin MtN21 family proteinF:unknown;P:unknown;C:membrane;BOPAMO.I.C.G.H.G.
12.099.340.4At5g38030833782MATE efflux family proteinF:antiporter activity, drug transporter activity, transporter activity;P:response to nematode;C:membrane;BOPFAMO.I.C.G.H.G.
12.099.332.5At4g11210826723disease resistance-responsive family protein / dirigent family proteinF:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;PO.I.C.G.H.G.
12.099.317.2At4g15230827187PDR2 (PLEIOTROPIC DRUG RESISTANCE 2)F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:membrane;BOMAFPVO.I.C.G.H.G.
11.999.318.9At2g40230818615transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFBOO.I.C.G.H.G.
11.999.39.6At2g01900814721endonuclease/exonuclease/phosphatase family proteinF:hydrolase activity, inositol or phosphatidylinositol phosphatase activity;P:biological_process unknown;C:unknown;MPFOO.I.C.G.H.G.
11.899.380.5At2g22330816765CYP79B3Encodes a cytochrome P450. Involved in tryptophan metabolism. Converts Trp to indole-3-acetaldoxime (IAOx), a precursor to IAA and indole glucosinolates.O.I.C.G.H.G.
11.699.3106.5At2g36290818200hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:biological_process unknown;C:endoplasmic reticulum;BPOFAO.I.C.G.H.G.
11.699.324.8At1g30840839967ATPUP4Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.O.I.C.G.H.G.
11.599.323.8At1g76560843989CP12-3F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPOO.I.C.G.H.G.
11.499.3265.0At4g12510826863protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
11.399.390.0At4g38470830003protein kinase family proteinF:protein serine/threonine/tyrosine kinase activity, protein kinase activity;P:protein amino acid phosphorylation, metabolic process;C:cytosol;MPOBFVAO.I.C.G.H.G.
11.299.270.9At1g02360837724chitinase, putativeF:chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBOMFVO.I.C.G.H.G.



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