CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM131565

Assay name ATGE_94_B

GSE experiment GSE5631: AtGenExpress: Developmental series (roots)

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
38.4 99.8 23.0 At1g78990 844239 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFB O.I. C.G. H.G.
35.0 99.7 168.1 At3g25190 822112 nodulin, putative F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPFA O.I. C.G. H.G.
31.2 99.7 74.5 At5g44550 834482 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
30.2 99.7 100.6 At4g20390 827787 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
29.9 99.7 16.4 At1g11450 837687 nodulin MtN21 family protein F:unknown;P:unknown;C:endomembrane system, membrane;PBOAM O.I. C.G. H.G.
29.3 99.7 86.8 At3g06390 819813 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
24.0 99.6 123.5 At3g09220 820078 LAC7 (laccase 7) putative laccase, a member of laccase family of genes (17 members in Arabidopsis). O.I. C.G. H.G.
23.4 99.6 83.6 At5g58860 836003 CYP86A1 (CYTOCHROME P450 86 A1) Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed significantly only in root tissue. O.I. C.G. H.G.
23.1 99.6 82.1 At2g48140 819426 EDA4 (embryo sac development arrest 4) F:lipid binding;P:megagametogenesis, lipid transport;C:anchored to membrane;PBMOFV O.I. C.G. H.G.
21.7 99.6 59.8 At5g25810 832650 tny (TINY) encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family (TINY). The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. Ectopic or overexpression of this gene in a Ds tagged line has reduced cell expansion. The expression of this gene is induced by ethylene and light and appears to stimulate cytokinin biosynthesis. O.I. C.G. H.G.
21.6 99.6 51.4 At1g08320 837353 bZIP family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMOF O.I. C.G. H.G.
21.2 99.6 77.5 At2g48130 819425 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:anchored to membrane;PBOM O.I. C.G. H.G.
21.0 99.6 74.8 At2g44380 819045 DC1 domain-containing protein F:unknown;P:unknown;C:unknown;PMO O.I. C.G. H.G.
20.9 99.6 92.4 At3g63200 825495 PLP9 (PATATIN-LIKE PROTEIN 9) F:nutrient reservoir activity;P:metabolic process, lipid metabolic process;C:cellular_component unknown;BPMOF O.I. C.G. H.G.
20.9 99.6 57.7 At3g45710 823713 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;PBMOFA O.I. C.G. H.G.
20.9 99.6 8.7 At1g30080 839887 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFO O.I. C.G. H.G.
20.8 99.6 34.4 At2g36120 3768574 DOT1 (DEFECTIVELY ORGANIZED TRIBUTARIES 1) Encodes a glycine rich protein that is involved in leaf vascular patterning. dot1 mutants have an aberrant open-class venation pattern in leaves and cotyledons, as well as several other leaf development defects. O.I. C.G. H.G.
20.8 99.6 28.9 At2g24580 816994 sarcosine oxidase family protein F:sarcosine oxidase activity;P:tetrahydrofolate metabolic process;C:cellular_component unknown;BOMFAP O.I. C.G. H.G.
20.4 99.6 74.7 At2g46750 819288 FAD-binding domain-containing protein F:oxidoreductase activity, D-arabinono-1,4-lactone oxidase activity, FAD binding, catalytic activity;P:unknown;C:membrane;BOPFMA O.I. C.G. H.G.
20.3 99.6 109.7 At2g23540 816886 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM O.I. C.G. H.G.
19.8 99.6 41.7 At4g11210 826723 disease resistance-responsive family protein / dirigent family protein F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P O.I. C.G. H.G.
19.5 99.6 24.2 At1g35250 840414 thioesterase family protein F:hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity;P:biological_process unknown;C:cellular_component unknown;BOPA O.I. C.G. H.G.
19.4 99.6 41.4 At4g34138 829561 UGT73B1 (UDP-glucosyl transferase 73B1) F:quercetin 3-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity, abscisic acid glucosyltransferase activity;P:metabolic process;C:endomembrane system;PMBVOF O.I. C.G. H.G.
19.2 99.6 227.6 At2g05440 815093 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVA O.I. C.G. H.G.
19.1 99.6 24.6 At3g26330 822237 CYP71B37 putative cytochrome P450 O.I. C.G. H.G.
19.1 99.6 19.4 At3g46700 823823 UDP-glycosyltransferase/ transferase, transferring glycosyl groups F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBVOF O.I. C.G. H.G.
18.8 99.5 27.6 At2g47200 819333 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
18.6 99.5 54.1 At2g04800 815024 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P O.I. C.G. H.G.
18.4 99.5 34.0 At4g13860 827020 glycine-rich RNA-binding protein, putative F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBA O.I. C.G. H.G.
18.4 99.5 18.1 At1g13670 837928 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
18.3 99.5 17.4 At3g29780 822684 RALFL27 (ralf-like 27) Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. O.I. C.G. H.G.
18.2 99.5 105.7 At1g64590 842767 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPA O.I. C.G. H.G.
18.0 99.5 47.4 At1g74760 - - O.I. C.G. H.G.
18.0 99.5 11.9 At2g34180 817979 CIPK13 (CBL-INTERACTING PROTEIN KINASE 13) Encodes CBL-interacting protein kinase 13 (CIPK13). O.I. C.G. H.G.
17.8 99.5 22.2 At3g22800 821851 leucine-rich repeat family protein / extensin family protein F:structural constituent of cell wall, protein binding;P:unknown;C:endomembrane system;MPBOFVA O.I. C.G. H.G.
17.7 99.5 131.3 At2g36290 818200 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:biological_process unknown;C:endoplasmic reticulum;BPOFA O.I. C.G. H.G.
17.7 99.5 81.0 At4g39660 830120 AGT2 (ALANINE:GLYOXYLATE AMINOTRANSFERASE 2) alanine:glyoxylate aminotransferase 2 homolog (AGT2) mRNA, O.I. C.G. H.G.
17.4 99.5 143.5 At1g02900 839389 RALF1 (RAPID ALKALINIZATION FACTOR 1) Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. O.I. C.G. H.G.
17.3 99.5 58.6 At5g37690 833748 GDSL-motif lipase/hydrolase family protein F:lipase activity, hydrolase activity, acting on ester bonds;P:lipid metabolic process;C:endomembrane system;PBFOM O.I. C.G. H.G.
17.3 99.5 42.3 At4g31730 829301 GDU1 (GLUTAMINE DUMPER 1) Glutamine dumper1 is a putative transmembrane protein. It is involved in glutamine secretion O.I. C.G. H.G.
17.2 99.5 46.1 At4g28940 829015 catalytic F:catalytic activity;P:nucleoside metabolic process;C:endomembrane system;BPO O.I. C.G. H.G.
17.0 99.5 103.6 At3g55120 824678 TT5 (TRANSPARENT TESTA 5) Catalyzes the conversion of chalcones into flavanones. Required for the accumulation of purple anthocyanins in leaves and stems. O.I. C.G. H.G.
16.9 99.5 96.3 At2g22330 816765 CYP79B3 Encodes a cytochrome P450. Involved in tryptophan metabolism. Converts Trp to indole-3-acetaldoxime (IAOx), a precursor to IAA and indole glucosinolates. O.I. C.G. H.G.
16.9 99.5 57.4 At4g27860 828899 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;POMBF O.I. C.G. H.G.
16.9 99.5 55.3 At4g17800 827502 DNA-binding protein-related F:unknown;P:biological_process unknown;C:cellular_component unknown;PBMOF O.I. C.G. H.G.
16.9 99.5 26.5 At1g47480 841155 hydrolase F:hydrolase activity;P:metabolic process;C:cellular_component unknown;BOPFMAV O.I. C.G. H.G.
16.9 99.5 20.4 At4g15230 827187 PDR2 (PLEIOTROPIC DRUG RESISTANCE 2) F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:membrane;BOMAFPV O.I. C.G. H.G.
16.8 99.5 63.1 At5g43180 834336 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBO O.I. C.G. H.G.
16.8 99.5 25.7 At5g48290 834882 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;POBF O.I. C.G. H.G.
16.7 99.5 32.1 At2g42350 818836 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV O.I. C.G. H.G.
16.7 99.5 14.5 At2g29740 817524 UGT71C2 (UDP-GLUCOSYL TRANSFERASE 71C2) F:quercetin 3'-O-glucosyltransferase activity, quercetin 3-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOF O.I. C.G. H.G.
16.5 99.5 28.5 At4g18510 827583 CLE2 (CLAVATA3/ESR-RELATED) CLE2, putative ligand, member of large gene family homologous to Clavata3 O.I. C.G. H.G.
16.4 99.5 90.4 At1g15040 838069 glutamine amidotransferase-related F:hydrolase activity;P:glutamine metabolic process;C:cellular_component unknown;BOPAFM O.I. C.G. H.G.
16.3 99.5 23.8 At3g16350 820882 myb family transcription factor F:transcription factor activity, DNA binding;P:in 7 processes;C:unknown;PMOBFV O.I. C.G. H.G.
16.3 99.5 19.3 At3g45680 823710 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport, response to nematode;C:membrane;PBMOF O.I. C.G. H.G.
16.1 99.5 22.1 At2g40230 818615 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFBO O.I. C.G. H.G.
16.0 99.5 69.1 At2g47890 819401 zinc finger (B-box type) family protein F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;PO O.I. C.G. H.G.
16.0 99.5 65.8 At3g21510 821705 AHP1 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 1) Encodes AHP1, one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs). AHPs function as redundant positive regulators of cytokinin signaling. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6). O.I. C.G. H.G.
15.9 99.5 20.2 At2g22590 816790 transferase, transferring glycosyl groups F:transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBFOV O.I. C.G. H.G.
15.9 99.5 14.6 At3g60490 825220 AP2 domain-containing transcription factor TINY, putative encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. O.I. C.G. H.G.
15.8 99.5 287.9 At2g01530 814682 MLP329 (MLP-LIKE PROTEIN 329) F:copper ion binding;P:response to biotic stimulus, defense response;C:cellular_component unknown;P O.I. C.G. H.G.
15.7 99.5 80.3 At5g50760 835148 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO O.I. C.G. H.G.
15.7 99.5 68.0 At5g37990 833778 S-adenosylmethionine-dependent methyltransferase/ methyltransferase F:S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity;P:biological_process unknown;C:endomembrane system;POBMF O.I. C.G. H.G.
15.5 99.5 122.3 At5g59520 836071 ZIP2 encodes a metal ion transporter whose expression is regulated by copper. O.I. C.G. H.G.
15.5 99.5 112.3 At4g14010 827037 RALFL32 (ralf-like 32) Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. O.I. C.G. H.G.
15.5 99.5 80.3 At1g74460 843787 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM O.I. C.G. H.G.
15.3 99.4 43.3 At2g16790 816180 shikimate kinase family protein F:shikimate kinase activity, kinase activity, ATP binding;P:carbohydrate metabolic process;C:cellular_component unknown;BOFMPA O.I. C.G. H.G.
15.2 99.4 42.0 At3g16690 820921 nodulin MtN3 family protein F:unknown;P:biological_process unknown;C:endomembrane system, integral to membrane, membrane;PMO O.I. C.G. H.G.
15.2 99.4 39.0 At3g51910 824354 AT-HSFA7A member of Heat Stress Transcription Factor (Hsf) family O.I. C.G. H.G.
15.2 99.4 32.9 At1g23120 838920 major latex protein-related / MLP-related F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P O.I. C.G. H.G.
15.1 99.4 84.9 At1g29280 839802 WRKY65 member of WRKY Transcription Factor; Group II-e O.I. C.G. H.G.
15.1 99.4 32.7 At5g18860 832004 inosine-uridine preferring nucleoside hydrolase family protein F:hydrolase activity;P:biological_process unknown;C:cell wall;BOMPFA O.I. C.G. H.G.
15.1 99.4 31.6 At4g18610 827595 LSH9 (LIGHT SENSITIVE HYPOCOTYLS 9) F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PM O.I. C.G. H.G.
15.0 99.4 90.3 At3g23430 821924 PHO1 (phosphate 1) mutant is deficient in the transfer of phosphate from root epidermal and cortical cells to the xylem. encodes protein with the mainly hydrophilic N-terminal and the C-terminal containing 6 potential membrane-spanning domains. O.I. C.G. H.G.
15.0 99.4 10.7 At2g01900 814721 endonuclease/exonuclease/phosphatase family protein F:hydrolase activity, inositol or phosphatidylinositol phosphatase activity;P:biological_process unknown;C:unknown;MPFO O.I. C.G. H.G.
14.9 99.4 39.0 At3g43430 823423 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV O.I. C.G. H.G.
14.9 99.4 15.8 At1g52250 - - O.I. C.G. H.G.
14.8 99.4 163.0 At2g37750 818352 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
14.8 99.4 18.4 At3g45410 823679 lectin protein kinase family protein encodes a receptor-like kinase that has serine/threonine kinase activity whose expression is induced by high salt stress. This induction is inhibited by tobacco ethylene receptor. O.I. C.G. H.G.
14.7 99.4 112.3 At2g16005 816096 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFO O.I. C.G. H.G.
14.6 99.4 44.4 At5g38030 833782 MATE efflux family protein F:antiporter activity, drug transporter activity, transporter activity;P:response to nematode;C:membrane;BOPFAM O.I. C.G. H.G.
14.3 99.4 91.0 At1g22440 838850 alcohol dehydrogenase, putative F:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:oxidation reduction, metabolic process;C:cellular_component unknown;BOPFMAV O.I. C.G. H.G.
14.3 99.4 57.7 At1g21100 838706 O-methyltransferase, putative F:methyltransferase activity, O-methyltransferase activity, protein dimerization activity;P:unknown;C:cytosol;PBFOM O.I. C.G. H.G.
14.3 99.4 47.1 At5g06300 830518 carboxy-lyase F:carboxy-lyase activity;P:metabolic process;C:unknown;BOPFMA O.I. C.G. H.G.
14.1 99.4 91.2 At5g26740 832714 unknown protein F:unknown;P:unknown;C:endomembrane system;MPFO O.I. C.G. H.G.
14.1 99.4 43.6 At2g29660 817516 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:anchored to membrane;PFO O.I. C.G. H.G.
14.0 99.4 172.9 At2g43535 818955 trypsin inhibitor, putative Encodes a defensin-like (DEFL) family protein. O.I. C.G. H.G.
14.0 99.4 74.1 At1g56320 842085 unknown protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P O.I. C.G. H.G.
13.9 99.4 26.1 At3g12090 820383 TET6 (TETRASPANIN6) Member of TETRASPANIN family O.I. C.G. H.G.
13.7 99.4 121.9 At2g24550 816991 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO O.I. C.G. H.G.
13.7 99.4 31.5 At4g37010 829855 caltractin, putative / centrin, putative F:calcium ion binding;P:biological_process unknown;C:unknown;MFPOB O.I. C.G. H.G.
13.7 99.4 11.1 At3g59340 825103 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;OMBFPA O.I. C.G. H.G.
13.6 99.4 40.5 At5g47050 834751 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOVFBA O.I. C.G. H.G.
13.5 99.4 220.1 At1g17860 838365 trypsin and protease inhibitor family protein / Kunitz family protein F:endopeptidase inhibitor activity;P:biological_process unknown;C:apoplast, cell wall;PO O.I. C.G. H.G.
13.5 99.4 10.0 At1g31060 839992 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
13.3 99.4 110.1 At4g35060 829658 heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related F:metal ion binding;P:metal ion transport;C:cellular_component unknown;P O.I. C.G. H.G.
13.3 99.4 67.6 At4g19030 827641 NLM1 an aquaporin whose expression level is reduced by ABA, NaCl, dark, and dessication. is expressed at relatively low levels under normal conditions. Also functions in arsenite transport and tolerance. O.I. C.G. H.G.
13.1 99.4 173.5 At3g57020 824869 strictosidine synthase family protein F:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endoplasmic reticulum, vacuole;PMBOFA O.I. C.G. H.G.
13.1 99.4 69.6 At2g41660 818764 MIZ1 (mizu-kussei 1) Essential for hydrotropism in roots. Mutant roots are defective in hydrotropism, and have slightly reduced phototropism and modified wavy growth response. Has normal gravitropism and root elongation. O.I. C.G. H.G.
13.1 99.4 67.8 At3g06300 819804 AT-P4H-2 (A. THALIANA P4H ISOFORM 2) Encodes a prolyl-4 hydroxylase that can hydroxylate poly(L-proline)and other proline rich peptides, including those with sequences corresponding to those in arabinogalactan proteins and extensins. O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
38.4	99.8	23.0	At1g78990	844239	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFB	O.I.	C.G.	H.G.
35.0	99.7	168.1	At3g25190	822112	nodulin, putative	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPFA	O.I.	C.G.	H.G.
31.2	99.7	74.5	At5g44550	834482	integral membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
30.2	99.7	100.6	At4g20390	827787	integral membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
29.9	99.7	16.4	At1g11450	837687	nodulin MtN21 family protein	F:unknown;P:unknown;C:endomembrane system, membrane;PBOAM	O.I.	C.G.	H.G.
29.3	99.7	86.8	At3g06390	819813	integral membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
24.0	99.6	123.5	At3g09220	820078	LAC7 (laccase 7)	putative laccase, a member of laccase family of genes (17 members in Arabidopsis).	O.I.	C.G.	H.G.
23.4	99.6	83.6	At5g58860	836003	CYP86A1 (CYTOCHROME P450 86 A1)	Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed significantly only in root tissue.	O.I.	C.G.	H.G.
23.1	99.6	82.1	At2g48140	819426	EDA4 (embryo sac development arrest 4)	F:lipid binding;P:megagametogenesis, lipid transport;C:anchored to membrane;PBMOFV	O.I.	C.G.	H.G.
21.7	99.6	59.8	At5g25810	832650	tny (TINY)	encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family (TINY). The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. Ectopic or overexpression of this gene in a Ds tagged line has reduced cell expansion. The expression of this gene is induced by ethylene and light and appears to stimulate cytokinin biosynthesis.	O.I.	C.G.	H.G.
21.6	99.6	51.4	At1g08320	837353	bZIP family transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMOF	O.I.	C.G.	H.G.
21.2	99.6	77.5	At2g48130	819425	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:anchored to membrane;PBOM	O.I.	C.G.	H.G.
21.0	99.6	74.8	At2g44380	819045	DC1 domain-containing protein	F:unknown;P:unknown;C:unknown;PMO	O.I.	C.G.	H.G.
20.9	99.6	92.4	At3g63200	825495	PLP9 (PATATIN-LIKE PROTEIN 9)	F:nutrient reservoir activity;P:metabolic process, lipid metabolic process;C:cellular_component unknown;BPMOF	O.I.	C.G.	H.G.
20.9	99.6	57.7	At3g45710	823713	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport;C:membrane;PBMOFA	O.I.	C.G.	H.G.
20.9	99.6	8.7	At1g30080	839887	glycosyl hydrolase family 17 protein	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFO	O.I.	C.G.	H.G.
20.8	99.6	34.4	At2g36120	3768574	DOT1 (DEFECTIVELY ORGANIZED TRIBUTARIES 1)	Encodes a glycine rich protein that is involved in leaf vascular patterning. dot1 mutants have an aberrant open-class venation pattern in leaves and cotyledons, as well as several other leaf development defects.	O.I.	C.G.	H.G.
20.8	99.6	28.9	At2g24580	816994	sarcosine oxidase family protein	F:sarcosine oxidase activity;P:tetrahydrofolate metabolic process;C:cellular_component unknown;BOMFAP	O.I.	C.G.	H.G.
20.4	99.6	74.7	At2g46750	819288	FAD-binding domain-containing protein	F:oxidoreductase activity, D-arabinono-1,4-lactone oxidase activity, FAD binding, catalytic activity;P:unknown;C:membrane;BOPFMA	O.I.	C.G.	H.G.
20.3	99.6	109.7	At2g23540	816886	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM	O.I.	C.G.	H.G.
19.8	99.6	41.7	At4g11210	826723	disease resistance-responsive family protein / dirigent family protein	F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P	O.I.	C.G.	H.G.
19.5	99.6	24.2	At1g35250	840414	thioesterase family protein	F:hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity;P:biological_process unknown;C:cellular_component unknown;BOPA	O.I.	C.G.	H.G.
19.4	99.6	41.4	At4g34138	829561	UGT73B1 (UDP-glucosyl transferase 73B1)	F:quercetin 3-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity, abscisic acid glucosyltransferase activity;P:metabolic process;C:endomembrane system;PMBVOF	O.I.	C.G.	H.G.
19.2	99.6	227.6	At2g05440	815093	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVA	O.I.	C.G.	H.G.
19.1	99.6	24.6	At3g26330	822237	CYP71B37	putative cytochrome P450	O.I.	C.G.	H.G.
19.1	99.6	19.4	At3g46700	823823	UDP-glycosyltransferase/ transferase, transferring glycosyl groups	F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBVOF	O.I.	C.G.	H.G.
18.8	99.5	27.6	At2g47200	819333	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
18.6	99.5	54.1	At2g04800	815024	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P	O.I.	C.G.	H.G.
18.4	99.5	34.0	At4g13860	827020	glycine-rich RNA-binding protein, putative	F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBA	O.I.	C.G.	H.G.
18.4	99.5	18.1	At1g13670	837928	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
18.3	99.5	17.4	At3g29780	822684	RALFL27 (ralf-like 27)	Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.	O.I.	C.G.	H.G.
18.2	99.5	105.7	At1g64590	842767	short-chain dehydrogenase/reductase (SDR) family protein	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPA	O.I.	C.G.	H.G.
18.0	99.5	47.4	At1g74760		-	-	O.I.	C.G.	H.G.
18.0	99.5	11.9	At2g34180	817979	CIPK13 (CBL-INTERACTING PROTEIN KINASE 13)	Encodes CBL-interacting protein kinase 13 (CIPK13).	O.I.	C.G.	H.G.
17.8	99.5	22.2	At3g22800	821851	leucine-rich repeat family protein / extensin family protein	F:structural constituent of cell wall, protein binding;P:unknown;C:endomembrane system;MPBOFVA	O.I.	C.G.	H.G.
17.7	99.5	131.3	At2g36290	818200	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:biological_process unknown;C:endoplasmic reticulum;BPOFA	O.I.	C.G.	H.G.
17.7	99.5	81.0	At4g39660	830120	AGT2 (ALANINE:GLYOXYLATE AMINOTRANSFERASE 2)	alanine:glyoxylate aminotransferase 2 homolog (AGT2) mRNA,	O.I.	C.G.	H.G.
17.4	99.5	143.5	At1g02900	839389	RALF1 (RAPID ALKALINIZATION FACTOR 1)	Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.	O.I.	C.G.	H.G.
17.3	99.5	58.6	At5g37690	833748	GDSL-motif lipase/hydrolase family protein	F:lipase activity, hydrolase activity, acting on ester bonds;P:lipid metabolic process;C:endomembrane system;PBFOM	O.I.	C.G.	H.G.
17.3	99.5	42.3	At4g31730	829301	GDU1 (GLUTAMINE DUMPER 1)	Glutamine dumper1 is a putative transmembrane protein. It is involved in glutamine secretion	O.I.	C.G.	H.G.
17.2	99.5	46.1	At4g28940	829015	catalytic	F:catalytic activity;P:nucleoside metabolic process;C:endomembrane system;BPO	O.I.	C.G.	H.G.
17.0	99.5	103.6	At3g55120	824678	TT5 (TRANSPARENT TESTA 5)	Catalyzes the conversion of chalcones into flavanones. Required for the accumulation of purple anthocyanins in leaves and stems.	O.I.	C.G.	H.G.
16.9	99.5	96.3	At2g22330	816765	CYP79B3	Encodes a cytochrome P450. Involved in tryptophan metabolism. Converts Trp to indole-3-acetaldoxime (IAOx), a precursor to IAA and indole glucosinolates.	O.I.	C.G.	H.G.
16.9	99.5	57.4	At4g27860	828899	integral membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;POMBF	O.I.	C.G.	H.G.
16.9	99.5	55.3	At4g17800	827502	DNA-binding protein-related	F:unknown;P:biological_process unknown;C:cellular_component unknown;PBMOF	O.I.	C.G.	H.G.
16.9	99.5	26.5	At1g47480	841155	hydrolase	F:hydrolase activity;P:metabolic process;C:cellular_component unknown;BOPFMAV	O.I.	C.G.	H.G.
16.9	99.5	20.4	At4g15230	827187	PDR2 (PLEIOTROPIC DRUG RESISTANCE 2)	F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:membrane;BOMAFPV	O.I.	C.G.	H.G.
16.8	99.5	63.1	At5g43180	834336	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBO	O.I.	C.G.	H.G.
16.8	99.5	25.7	At5g48290	834882	heavy-metal-associated domain-containing protein	F:metal ion binding;P:metal ion transport;C:cellular_component unknown;POBF	O.I.	C.G.	H.G.
16.7	99.5	32.1	At2g42350	818836	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV	O.I.	C.G.	H.G.
16.7	99.5	14.5	At2g29740	817524	UGT71C2 (UDP-GLUCOSYL TRANSFERASE 71C2)	F:quercetin 3'-O-glucosyltransferase activity, quercetin 3-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOF	O.I.	C.G.	H.G.
16.5	99.5	28.5	At4g18510	827583	CLE2 (CLAVATA3/ESR-RELATED)	CLE2, putative ligand, member of large gene family homologous to Clavata3	O.I.	C.G.	H.G.
16.4	99.5	90.4	At1g15040	838069	glutamine amidotransferase-related	F:hydrolase activity;P:glutamine metabolic process;C:cellular_component unknown;BOPAFM	O.I.	C.G.	H.G.
16.3	99.5	23.8	At3g16350	820882	myb family transcription factor	F:transcription factor activity, DNA binding;P:in 7 processes;C:unknown;PMOBFV	O.I.	C.G.	H.G.
16.3	99.5	19.3	At3g45680	823710	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport, response to nematode;C:membrane;PBMOF	O.I.	C.G.	H.G.
16.1	99.5	22.1	At2g40230	818615	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFBO	O.I.	C.G.	H.G.
16.0	99.5	69.1	At2g47890	819401	zinc finger (B-box type) family protein	F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;PO	O.I.	C.G.	H.G.
16.0	99.5	65.8	At3g21510	821705	AHP1 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 1)	Encodes AHP1, one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs). AHPs function as redundant positive regulators of cytokinin signaling. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6).	O.I.	C.G.	H.G.
15.9	99.5	20.2	At2g22590	816790	transferase, transferring glycosyl groups	F:transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBFOV	O.I.	C.G.	H.G.
15.9	99.5	14.6	At3g60490	825220	AP2 domain-containing transcription factor TINY, putative	encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.	O.I.	C.G.	H.G.
15.8	99.5	287.9	At2g01530	814682	MLP329 (MLP-LIKE PROTEIN 329)	F:copper ion binding;P:response to biotic stimulus, defense response;C:cellular_component unknown;P	O.I.	C.G.	H.G.
15.7	99.5	80.3	At5g50760	835148	auxin-responsive family protein	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO	O.I.	C.G.	H.G.
15.7	99.5	68.0	At5g37990	833778	S-adenosylmethionine-dependent methyltransferase/ methyltransferase	F:S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity;P:biological_process unknown;C:endomembrane system;POBMF	O.I.	C.G.	H.G.
15.5	99.5	122.3	At5g59520	836071	ZIP2	encodes a metal ion transporter whose expression is regulated by copper.	O.I.	C.G.	H.G.
15.5	99.5	112.3	At4g14010	827037	RALFL32 (ralf-like 32)	Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.	O.I.	C.G.	H.G.
15.5	99.5	80.3	At1g74460	843787	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM	O.I.	C.G.	H.G.
15.3	99.4	43.3	At2g16790	816180	shikimate kinase family protein	F:shikimate kinase activity, kinase activity, ATP binding;P:carbohydrate metabolic process;C:cellular_component unknown;BOFMPA	O.I.	C.G.	H.G.
15.2	99.4	42.0	At3g16690	820921	nodulin MtN3 family protein	F:unknown;P:biological_process unknown;C:endomembrane system, integral to membrane, membrane;PMO	O.I.	C.G.	H.G.
15.2	99.4	39.0	At3g51910	824354	AT-HSFA7A	member of Heat Stress Transcription Factor (Hsf) family	O.I.	C.G.	H.G.
15.2	99.4	32.9	At1g23120	838920	major latex protein-related / MLP-related	F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P	O.I.	C.G.	H.G.
15.1	99.4	84.9	At1g29280	839802	WRKY65	member of WRKY Transcription Factor; Group II-e	O.I.	C.G.	H.G.
15.1	99.4	32.7	At5g18860	832004	inosine-uridine preferring nucleoside hydrolase family protein	F:hydrolase activity;P:biological_process unknown;C:cell wall;BOMPFA	O.I.	C.G.	H.G.
15.1	99.4	31.6	At4g18610	827595	LSH9 (LIGHT SENSITIVE HYPOCOTYLS 9)	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PM	O.I.	C.G.	H.G.
15.0	99.4	90.3	At3g23430	821924	PHO1 (phosphate 1)	mutant is deficient in the transfer of phosphate from root epidermal and cortical cells to the xylem. encodes protein with the mainly hydrophilic N-terminal and the C-terminal containing 6 potential membrane-spanning domains.	O.I.	C.G.	H.G.
15.0	99.4	10.7	At2g01900	814721	endonuclease/exonuclease/phosphatase family protein	F:hydrolase activity, inositol or phosphatidylinositol phosphatase activity;P:biological_process unknown;C:unknown;MPFO	O.I.	C.G.	H.G.
14.9	99.4	39.0	At3g43430	823423	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV	O.I.	C.G.	H.G.
14.9	99.4	15.8	At1g52250		-	-	O.I.	C.G.	H.G.
14.8	99.4	163.0	At2g37750	818352	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
14.8	99.4	18.4	At3g45410	823679	lectin protein kinase family protein	encodes a receptor-like kinase that has serine/threonine kinase activity whose expression is induced by high salt stress. This induction is inhibited by tobacco ethylene receptor.	O.I.	C.G.	H.G.
14.7	99.4	112.3	At2g16005	816096	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFO	O.I.	C.G.	H.G.
14.6	99.4	44.4	At5g38030	833782	MATE efflux family protein	F:antiporter activity, drug transporter activity, transporter activity;P:response to nematode;C:membrane;BOPFAM	O.I.	C.G.	H.G.
14.3	99.4	91.0	At1g22440	838850	alcohol dehydrogenase, putative	F:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:oxidation reduction, metabolic process;C:cellular_component unknown;BOPFMAV	O.I.	C.G.	H.G.
14.3	99.4	57.7	At1g21100	838706	O-methyltransferase, putative	F:methyltransferase activity, O-methyltransferase activity, protein dimerization activity;P:unknown;C:cytosol;PBFOM	O.I.	C.G.	H.G.
14.3	99.4	47.1	At5g06300	830518	carboxy-lyase	F:carboxy-lyase activity;P:metabolic process;C:unknown;BOPFMA	O.I.	C.G.	H.G.
14.1	99.4	91.2	At5g26740	832714	unknown protein	F:unknown;P:unknown;C:endomembrane system;MPFO	O.I.	C.G.	H.G.
14.1	99.4	43.6	At2g29660	817516	zinc finger (C2H2 type) family protein	F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:anchored to membrane;PFO	O.I.	C.G.	H.G.
14.0	99.4	172.9	At2g43535	818955	trypsin inhibitor, putative	Encodes a defensin-like (DEFL) family protein.	O.I.	C.G.	H.G.
14.0	99.4	74.1	At1g56320	842085	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
13.9	99.4	26.1	At3g12090	820383	TET6 (TETRASPANIN6)	Member of TETRASPANIN family	O.I.	C.G.	H.G.
13.7	99.4	121.9	At2g24550	816991	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO	O.I.	C.G.	H.G.
13.7	99.4	31.5	At4g37010	829855	caltractin, putative / centrin, putative	F:calcium ion binding;P:biological_process unknown;C:unknown;MFPOB	O.I.	C.G.	H.G.
13.7	99.4	11.1	At3g59340	825103	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;OMBFPA	O.I.	C.G.	H.G.
13.6	99.4	40.5	At5g47050	834751	protein binding / zinc ion binding	F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOVFBA	O.I.	C.G.	H.G.
13.5	99.4	220.1	At1g17860	838365	trypsin and protease inhibitor family protein / Kunitz family protein	F:endopeptidase inhibitor activity;P:biological_process unknown;C:apoplast, cell wall;PO	O.I.	C.G.	H.G.
13.5	99.4	10.0	At1g31060	839992	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
13.3	99.4	110.1	At4g35060	829658	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	F:metal ion binding;P:metal ion transport;C:cellular_component unknown;P	O.I.	C.G.	H.G.
13.3	99.4	67.6	At4g19030	827641	NLM1	an aquaporin whose expression level is reduced by ABA, NaCl, dark, and dessication. is expressed at relatively low levels under normal conditions. Also functions in arsenite transport and tolerance.	O.I.	C.G.	H.G.
13.1	99.4	173.5	At3g57020	824869	strictosidine synthase family protein	F:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endoplasmic reticulum, vacuole;PMBOFA	O.I.	C.G.	H.G.
13.1	99.4	69.6	At2g41660	818764	MIZ1 (mizu-kussei 1)	Essential for hydrotropism in roots. Mutant roots are defective in hydrotropism, and have slightly reduced phototropism and modified wavy growth response. Has normal gravitropism and root elongation.	O.I.	C.G.	H.G.
13.1	99.4	67.8	At3g06300	819804	AT-P4H-2 (A. THALIANA P4H ISOFORM 2)	Encodes a prolyl-4 hydroxylase that can hydroxylate poly(L-proline)and other proline rich peptides, including those with sequences corresponding to those in arabinogalactan proteins and extensins.	O.I.	C.G.	H.G.

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GSM ID	GSM131565
Assay name	ATGE_94_B
GSE experiment	GSE5631: AtGenExpress: Developmental series (roots)

Microarray experiments to specifically-expressed genes

GSM ID GSM131565 Assay name ATGE_94_B GSE experiment GSE5631: AtGenExpress: Developmental series (roots)

GSM ID GSM131565

Assay name ATGE_94_B

GSE experiment GSE5631: AtGenExpress: Developmental series (roots)