Microarray experiments to specifically-expressed genes

GSM ID GSM131556
Assay name ATGE_3_B
GSE experiment GSE5631: AtGenExpress: Developmental series (roots)

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
73.199.941.2At3g02850821052SKORmember of Stelar K+ outward rectifying channel (SKOR) family. Mediates the delivery of K+ from stelar cells to the xylem in the roots towards the shoot. mRNA accumulation is modulated by abscisic acid. K+ gating activity is modulated by external and internal K+.O.I.C.G.H.G.
73.099.989.6At2g18140816327peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:cell wall;PFOBMO.I.C.G.H.G.
68.999.927.1At4g20230827770terpene synthase/cyclase family proteinF:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;PFOO.I.C.G.H.G.
57.699.853.3At4g18510827583CLE2 (CLAVATA3/ESR-RELATED)CLE2, putative ligand, member of large gene family homologous to Clavata3O.I.C.G.H.G.
43.299.828.7At2g42250818826CYP712A1member of CYP712AO.I.C.G.H.G.
35.399.724.1At3g62760825451ATGSTF13Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).O.I.C.G.H.G.
35.299.731.4At1g528208417152-oxoglutarate-dependent dioxygenase, putativeF:oxidoreductase activity;P:unknown;C:unknown;POBFMO.I.C.G.H.G.
34.599.725.9At5g52790835356CBS domain-containing protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BOMFPAO.I.C.G.H.G.
34.499.735.3At1g69230843254SP1L2 (SPIRAL1-LIKE2)SPIRAL1-LIKE2 belongs to a six-member gene family in Arabidopsis; all members share a high sequence similarity in amino- and carboxy-terminal regions. Regulates cortical microtubule organization. Mutant plants exhibit altered patterns of root and organ growth as a result of defective anisotropic cell expansion.O.I.C.G.H.G.
30.399.723.7At4g11880826795AGL14 (agamous-like 14)AGL12, AGL14, and AGL17 are all preferentially expressed in root tissues and therefore represent the only characterized MADS box genes expressed in roots.O.I.C.G.H.G.
29.399.727.9At5g06800830570myb family transcription factorF:transcription factor activity;P:regulation of transcription;C:unknown;POFMO.I.C.G.H.G.
29.199.754.1At1g13420837902ST4B (SULFOTRANSFERASE 4B)Encodes a sulfotransferase. Unlike the related ST4A protein (At2g14920), in vitro experiements show that this enzyme does not act brassinosteroids. ST4B is expressed in the roots and transcript levels rise in response to cytokinin treatment.O.I.C.G.H.G.
28.999.755.5At3g01260821171aldose 1-epimerase/ carbohydrate binding / catalytic/ isomeraseF:carbohydrate binding, isomerase activity, aldose 1-epimerase activity, catalytic activity;P:galactose metabolic process, hexose metabolic process, carbohydrate metabolic process;C:endomembrane system;OBMFPVAO.I.C.G.H.G.
27.799.7111.6At4g11190826721disease resistance-responsive family protein / dirigent family proteinF:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;PO.I.C.G.H.G.
24.999.676.9At5g43180834336unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBOO.I.C.G.H.G.
24.599.612.2At5g04370830316NAMT1A member of the Arabidopsis SABATH methyltransferase gene family. Encodes NAMT1, a methyltransferase that methylates nicotinic acid.O.I.C.G.H.G.
23.899.6120.6At4g36430829795peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to other organism;C:cell wall;PFOBMO.I.C.G.H.G.
23.499.636.5At3g45960823739ATEXLA3 (arabidopsis thaliana expansin-like a3)member of EXPANSIN-LIKE. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)O.I.C.G.H.G.
22.999.629.7At5g38700833860unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PO.I.C.G.H.G.
22.399.626.9At1g14480838010protein bindingF:protein binding;P:biological_process unknown;C:cellular_component unknown;MOPBFVAO.I.C.G.H.G.
21.799.638.1At5g10170830881MIPS3 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 3)myo-inositol-1-phosphate synthase isoform 3.Expressed in leaf, root and silique. Immunolocaliazation experiments with an antibody recognizing MIPS1, MIPS2, and MIPS3 showed endosperm localization.O.I.C.G.H.G.
21.799.616.7At5g52020835277AP2 domain-containing proteinencodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.O.I.C.G.H.G.
21.699.690.8At4g29270829048acid phosphatase class B family proteinF:acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBOO.I.C.G.H.G.
21.399.631.9At1g11080837649scpl31 (serine carboxypeptidase-like 31)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOBO.I.C.G.H.G.
19.999.613.1At4g23510828451disease resistance protein (TIR class), putativeF:transmembrane receptor activity;P:defense response signaling pathway, resistance gene-dependent, signal transduction, defense response, innate immune response;C:intrinsic to membrane;PBOO.I.C.G.H.G.
19.799.629.4At1g12610837817DDF1 (DWARF AND DELAYED FLOWERING 1)Encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (DDF1). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. Overexpression of this gene results in delayed flowering and dwarfism, reduction of gibberellic acid biosynthesis, and increased tolerance to high levels of salt. This gene is expressed in all tissues examined, but most abundantly expressed in upper stems. Overexpression of this gene is also correlated with increased expression of GA biosynthetic genes and RD29A (a cold and drought responsive gene). Under salt stress it induces the expression of GAOX7, which encodes ad C20-GA inhibitor.O.I.C.G.H.G.
19.799.613.8At2g31085817664CLE6 (CLAVATA3/ESR-RELATED 6)Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon. Can replace CLV3 function in vivo.O.I.C.G.H.G.
19.699.641.4At1g78090844144ATTPPB (TREHALOSE-6-PHOSPHATE PHOSPHATASE)homologous to the C-terminal part of microbial trehalose-6-phosphate phosphatasesO.I.C.G.H.G.
19.599.619.7At2g22850816816AtbZIP6 (Arabidopsis thaliana basic leucine-zipper 6)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;POMFO.I.C.G.H.G.
19.199.622.5At4g15340827200ATPEN1 (ARABIDOPSIS THALIANA PENTACYCLIC TRITERPENE SYNTHASE 1)Encodes a protein that catalyzes the production of the tricyclic triterpene arabidiol when expressed in yeast.O.I.C.G.H.G.
18.699.537.0At1g01190839233CYP78A8member of CYP78AO.I.C.G.H.G.
18.599.510.8At3g60550825226CYCP3F:cyclin-dependent protein kinase activity;P:regulation of cell cycle;C:unknown;FOMPBO.I.C.G.H.G.
18.199.5205.6At5g05960830481protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
18.099.5118.3At3g54260824593unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;PMO.I.C.G.H.G.
17.899.5121.1At5g62340836355invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
17.799.53.8At1g63030842606ddf2 (DWARF AND DELAYED FLOWERING 2)encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (DDF2). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. Overexpression of this gene results in the reduction of gibberellic acid biosynthesis. This gene is expressed in all tissues examined, but most abundantly expressed in rosette leaves and stems. Overexpression of DDF1, a putative paralog of this gene, also reduces gibberellic acid biosynthesis and makes the plants more tolerant to high-salinity levels.O.I.C.G.H.G.
17.299.529.6At1g03170839563unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
16.899.515.3At3g46880823841unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
16.699.551.0At2g04800815024unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PO.I.C.G.H.G.
16.099.5162.2At3g21770821731peroxidase 30 (PER30) (P30) (PRXR9)F:transferase activity, transferring glycosyl groups, peroxidase activity;P:response to oxidative stress;C:cell wall, nucleus, cytoplasm, plant-type cell wall;PFOBMO.I.C.G.H.G.
15.899.552.4At3g02885821194GASA5 (GAST1 PROTEIN HOMOLOG 5)F:unknown;P:response to gibberellin stimulus;C:endomembrane system;PO.I.C.G.H.G.
15.899.525.4At3g45070823642sulfotransferase family proteinF:sulfotransferase activity;P:biological_process unknown;C:cellular_component unknown;MOPBFO.I.C.G.H.G.
15.699.510.3At1g61130842406SCPL32 (SERINE CARBOXYPEPTIDASE-LIKE 32)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOBO.I.C.G.H.G.
15.199.450.1At1g31710840058copper amine oxidase, putativeF:amine oxidase activity, quinone binding, copper ion binding;P:cellular amine metabolic process;C:endomembrane system;FBMOPAO.I.C.G.H.G.
15.099.4165.6At4g39675830122unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
14.799.4288.4At4g22212828313-Encodes a defensin-like (DEFL) family protein.O.I.C.G.H.G.
14.299.432.0At5g05160830398leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:cell wall, plasma membrane;PMOBFVAO.I.C.G.H.G.
14.199.488.0At2g22330816765CYP79B3Encodes a cytochrome P450. Involved in tryptophan metabolism. Converts Trp to indole-3-acetaldoxime (IAOx), a precursor to IAA and indole glucosinolates.O.I.C.G.H.G.
14.199.459.7At5g44400834466FAD-binding domain-containing proteinF:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:cell wall;BFOPAMO.I.C.G.H.G.
14.199.416.2At1g07260837237UGT71C3 (UDP-GLUCOSYL TRANSFERASE 71C3)F:quercetin 3-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOFO.I.C.G.H.G.
13.999.4129.5At5g59090836026ATSBT4.12F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast, nucleus, cytoplasm;BPOFAMO.I.C.G.H.G.
13.999.471.9At4g39660830120AGT2 (ALANINE:GLYOXYLATE AMINOTRANSFERASE 2)alanine:glyoxylate aminotransferase 2 homolog (AGT2) mRNA,O.I.C.G.H.G.
13.899.4140.6At5g23830832448MD-2-related lipid recognition domain-containing protein / ML domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
13.899.423.5At2g28780817427unknown proteinF:unknown;P:biological_process unknown;C:mitochondrion;BPOO.I.C.G.H.G.
13.699.451.1At5g60890836210MYB34 (MYB DOMAIN PROTEIN 34)Myb-like transcription factor that modulates expression of ASA1, a key point of control in the tryptophan pathway; mutant has deregulated expression of ASA1 in dominant allele. Loss of function allele suggests ATR1 also functions at a control point for regulating indole glucosinolate homeostasis.O.I.C.G.H.G.
13.599.424.3At1g12160837768flavin-containing monooxygenase family protein / FMO family proteinF:NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity;P:biological_process unknown;C:cellular_component unknown;BOMFPAO.I.C.G.H.G.
13.299.47.7At3g29430822604geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putativeF:unknown;P:isoprenoid biosynthetic process;C:unknown;OBFPMAVO.I.C.G.H.G.
13.199.415.2At5g62330836354-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
13.099.418.4At1g67110843031CYP735A2member of CYP709AO.I.C.G.H.G.
12.999.333.4At4g13235826940EDA21 (embryo sac development arrest 21)Encodes a defensin-like (DEFL) family protein.O.I.C.G.H.G.
12.799.3289.4At4g12550826868AIR1isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein that is related to a large family of proteins that consist of a proline-rich or glycine-rich N-terminus and a hydrophobic, possibly membrane spanning C-terminus.O.I.C.G.H.G.
12.599.398.6At1g15210838087PDR7 (PLEIOTROPIC DRUG RESISTANCE 7)F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:plasma membrane, chloroplast, membrane;BOMFAPVO.I.C.G.H.G.
12.499.314.4At1g52250--O.I.C.G.H.G.
12.399.329.5At5g17350831601unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PO.I.C.G.H.G.
12.399.325.9At5g65970836727MLO10 (MILDEW RESISTANCE LOCUS O 10)A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO10 belongs to the clade III, with AtMLO5, AtMLO7, AtMLO8, and AtMLO9. The gene is expressed in root and cotyledon vascular system, in root-shoot junction and lateral root primordia and in developing siliques, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(sO.I.C.G.H.G.
12.299.375.9At5g45340834570CYP707A3Encodes a protein with ABA 8'-hydroxylase activity; involved in ABA catabolism. Mutant analyses show that disruption in the gene results in more drought tolerance whereas overexpression results in increased transpiration rate and reduced drought tolerance. Gene involved in postgermination growth. Plant P450 CYP707A3, ABA 8'-hydroxylase, binds enantioselectively (+)-ABA but not (-)-ABA, whereas the enzyme binds both enantiomers of AHI1 (a structural ABA analogue used as ABA 8'-hydroxylase competitive inhibitor).O.I.C.G.H.G.
12.199.366.2At1g13300837890myb family transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POVBMFO.I.C.G.H.G.
11.999.371.2At2g42760818876unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFO.I.C.G.H.G.
11.999.363.8At2g30210817571LAC3 (laccase 3)putative laccase, a member of laccase family of genes (17 members in Arabidopsis).O.I.C.G.H.G.
11.999.320.3At5g44350834461ethylene-responsive nuclear protein -relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBO.I.C.G.H.G.
11.899.399.2At3g62040825377catalytic/ hydrolaseF:hydrolase activity, catalytic activity;P:metabolic process;C:unknown;OBPFAO.I.C.G.H.G.
11.799.312.2At2g38600818442acid phosphatase class B family proteinF:acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBOO.I.C.G.H.G.
11.699.396.8At3g25190822112nodulin, putativeF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPFAO.I.C.G.H.G.
11.499.323.3At3g13760820585DC1 domain-containing proteinF:protein binding, zinc ion binding;P:unknown;C:membrane;PMOO.I.C.G.H.G.
11.399.378.4At3g23430821924PHO1 (phosphate 1)mutant is deficient in the transfer of phosphate from root epidermal and cortical cells to the xylem. encodes protein with the mainly hydrophilic N-terminal and the C-terminal containing 6 potential membrane-spanning domains.O.I.C.G.H.G.
11.299.2134.0At1g15380838107lactoylglutathione lyase family protein / glyoxalase I family proteinF:lactoylglutathione lyase activity;P:carbohydrate metabolic process;C:cellular_component unknown;BPOMFAO.I.C.G.H.G.
11.299.2115.8At4g30450829168glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MOBPFVAO.I.C.G.H.G.
11.299.249.5At4g10380826630NIP5Essential for efficient Boron uptake and plant development under boron limitation. Also functions in arsenite transport and tolerance.O.I.C.G.H.G.
11.199.214.1At1g16530838223ASL9 (ASYMMETRIC LEAVES 2 LIKE 9)F:unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
11.099.242.3At2g29750817525UGT71C1 (UDP-GLUCOSYL TRANSFERASE 71C1)F:quercetin 3'-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBOVFO.I.C.G.H.G.
11.099.227.9At5g18860832004inosine-uridine preferring nucleoside hydrolase family proteinF:hydrolase activity;P:biological_process unknown;C:cell wall;BOMPFAO.I.C.G.H.G.
11.099.218.8At1g62280842525SLAH1 (SLAC1 HOMOLOGUE 1)Encodes a protein with ten predicted transmembrane helices. The SLAH1 protein has similarity to the SLAC1 protein involved in ion homeostasis in guard cells. Although it is not expressed in guard cells, it can complement a slac1-2 mutant suggesting that it performs a similar function. SLAH1:GFP localizes to the plasma membrane.O.I.C.G.H.G.
10.999.2152.0At2g43535818955trypsin inhibitor, putativeEncodes a defensin-like (DEFL) family protein.O.I.C.G.H.G.
10.999.252.0At5g62630836384HIPL2 (HIPL2 PROTEIN PRECURSOR)F:catalytic activity;P:biological_process unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;BOPMAFO.I.C.G.H.G.
10.899.2111.6At4g11280826730ACS6 (1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID (ACC) SYNTHASE 6)encodes a a member of the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC 4.4.1.14) gene familyO.I.C.G.H.G.
10.899.278.7At1g77690844105LAX3 (LIKE AUX1 3)Encodes an auxin influx carrier LAX3 (Like Aux1) that promotes lateral root emergence. Auxin-induced expression of LAX3 in turn induces a selection of cell-wall-remodelling enzymes, which are likely to promote cell separation in advance of developing lateral root primordia.O.I.C.G.H.G.
10.899.224.3At3g19370821471-F:unknown;P:unknown;C:plasma membrane;MOBFPAVO.I.C.G.H.G.
10.699.242.5At4g18340827561glycosyl hydrolase family 17 proteinF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFOO.I.C.G.H.G.
10.699.29.6At1g66020842915terpene synthase/cyclase family proteinF:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;POBO.I.C.G.H.G.
10.399.291.8At5g10580830923unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPOO.I.C.G.H.G.
10.199.254.1At3g16340820881PDR1F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:plasma membrane;BOMFAPVO.I.C.G.H.G.
9.999.1220.3At2g38380818419peroxidase 22 (PER22) (P22) (PRXEA) / basic peroxidase EF:electron carrier activity, peroxidase activity, heme binding;P:response to salt stress;C:plant-type cell wall;PFOO.I.C.G.H.G.
9.999.1133.7At4g11310826733cysteine proteinase, putativecysteine proteinase precursor-like proteinO.I.C.G.H.G.
9.999.1123.6At5g23020832366IMS2 (2-ISOPROPYLMALATE SYNTHASE 2)methylthioalkymalate synthase-like. Also known as 2-isopropylmalate synthase (IMS2). encodes a methylthioalkylmalate synthase involved in the biosynthesis of aliphatic glucosinolates which accepts all the omega-methylthio-2-oxoalkanoic acids needed to form the known C3 to C8 glucosinolates in Arabidopsis.O.I.C.G.H.G.
9.999.111.6At1g07880837303ATMPK13member of MAP KinaseO.I.C.G.H.G.
9.999.16.7At5g19040832023IPT5Encodes cytokinin synthase.O.I.C.G.H.G.
9.899.117.8At3g49750824137AtRLP44 (Receptor Like Protein 44)F:protein binding;P:signal transduction;C:plasma membrane;POMBFAO.I.C.G.H.G.
9.799.180.8At4g33420829479peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:unknown;PFOBMO.I.C.G.H.G.
9.799.124.1At1g31950840085terpene synthase/cyclase family proteinF:lyase activity, magnesium ion binding;P:metabolic process;C:membrane;POO.I.C.G.H.G.
9.699.123.4At2g361203768574DOT1 (DEFECTIVELY ORGANIZED TRIBUTARIES 1)Encodes a glycine rich protein that is involved in leaf vascular patterning. dot1 mutants have an aberrant open-class venation pattern in leaves and cotyledons, as well as several other leaf development defects.O.I.C.G.H.G.



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