CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM131537

Assay name ATGE_25_A

GSE experiment GSE5630: AtGenExpress: Developmental series (leaves)

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
302.3 100.0 151.0 At1g62760 842574 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:unknown;C:unknown;MOFBPVA O.I. C.G. H.G.
276.0 100.0 397.2 At5g45890 834629 SAG12 (SENESCENCE-ASSOCIATED GENE 12) Senescence-associated gene 12 (SAG12) encoding a cysteine protease influenced by cytokinin, auxin, and sugars.Localized to special vacuole found during senescence called senescence associated vacuoles which are different from central vacuole in the tonoplast composition and pH. O.I. C.G. H.G.
133.9 99.9 184.4 At4g14090 827046 UDP-glucoronosyl/UDP-glucosyl transferase family protein The At4g14090 encodes a anthocyanidin 5-O-glucosyltransferase specifically glucosylating the 5-position of the flavonoid A-ring. O.I. C.G. H.G.
129.9 99.9 264.8 At1g69490 843282 NAP (NAC-like, activated by AP3/PI) Encodes a member of the NAC transcription factor gene family. It is expressed in floral primordia and upregulated by AP3 and PI. Its expression is associated with leaf senescence. O.I. C.G. H.G.
125.1 99.9 146.5 At1g66390 842957 MYB90 (MYB DOMAIN PROTEIN 90) production of anthocyanin pigment 2 protein (PAP2) O.I. C.G. H.G.
118.7 99.9 204.0 At4g22920 828391 NYE1 (NON-YELLOWING 1) Similar to the tomato senescence-inducible chloroplast stay-green protein 1. It is upregulated during maximal senescence in the Arabidopsis life cycle, especially in senescent leaves. O.I. C.G. H.G.
114.9 99.9 112.8 At1g54570 841899 esterase/lipase/thioesterase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity;P:unknown;C:chloroplast, plastoglobule;BMPOF O.I. C.G. H.G.
111.8 99.9 54.4 At2g47190 819332 MYB2 (MYB DOMAIN PROTEIN 2) Encodes a MYB transcription factor that possesses an R2R3 MYB DNA binding domain and is known to regulate the expression of salt- and dehydration-responsive genes. Has been shown to bind calmodulin. O.I. C.G. H.G.
105.4 99.9 50.3 At3g26820 822297 esterase/lipase/thioesterase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity;P:biological_process unknown;C:unknown;BPOMF O.I. C.G. H.G.
99.8 99.9 133.4 At2g25625 817103 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
97.7 99.9 120.9 At4g00700 828031 C2 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF O.I. C.G. H.G.
95.8 99.9 179.1 At5g13800 831225 hydrolase, alpha/beta fold family protein F:hydrolase activity, pheophytinase activity;P:chlorophyll catabolic process;C:chloroplast;BOPMAF O.I. C.G. H.G.
93.2 99.9 270.7 At5g39520 833948 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPO O.I. C.G. H.G.
92.1 99.9 49.7 At5g59050 836022 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
86.0 99.9 70.1 At3g23790 821961 AMP-binding protein, putative F:catalytic activity;P:metabolic process;C:chloroplast envelope;BOMFPAV O.I. C.G. H.G.
81.9 99.9 150.0 At5g45380 834574 sodium:solute symporter family protein F:urea transmembrane transporter activity, solute:sodium symporter activity;P:cellular response to nitrogen starvation;C:plasma membrane;BOMFAP O.I. C.G. H.G.
79.8 99.9 69.5 At4g24000 828500 ATCSLG2 encodes a protein similar to cellulose synthase O.I. C.G. H.G.
76.2 99.9 130.0 At4g32250 829358 protein kinase family protein F:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;MOPBFVA O.I. C.G. H.G.
75.3 99.9 36.6 At5g39030 833895 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
74.4 99.9 238.7 At3g03470 821250 CYP89A9 member of CYP89A O.I. C.G. H.G.
72.9 99.9 176.0 At5g18130 831931 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
70.6 99.9 95.2 At1g34040 840301 alliinase family protein F:pyridoxal phosphate binding, carbon-sulfur lyase activity, catalytic activity;P:biological_process unknown;C:endomembrane system;PBOAF O.I. C.G. H.G.
69.6 99.9 187.0 At3g10420 820206 sporulation protein-related F:nucleoside-triphosphatase activity, nucleotide binding;P:unknown;C:chloroplast;BOPAMF O.I. C.G. H.G.
66.8 99.8 17.9 At3g24900 822088 AtRLP39 (Receptor Like Protein 39) F:protein binding;P:signal transduction, defense response;C:endomembrane system;PMOBFAV O.I. C.G. H.G.
66.0 99.8 35.3 At3g29590 822623 AT5MAT At3g29590 (At5MAT) encodes a malonyl-CoA:anthocyanidin 5-O-glucoside-6"-O-malonyltransferase that is coordinately expressed with a epistatic 5-O-anthocyanidin glucosyltransferase (At4g14090). The enzyme is involved in the malonylation of anthocyanins in Arabidopsis. O.I. C.G. H.G.
64.3 99.8 61.7 At3g57680 824937 peptidase S41 family protein F:serine-type peptidase activity, protein binding;P:proteolysis, intracellular signaling cascade;C:chloroplast thylakoid lumen, membrane;OBPM O.I. C.G. H.G.
63.9 99.8 86.6 At3g03870 821099 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
62.1 99.8 99.8 At1g09240 837444 NAS3 (NICOTIANAMINE SYNTHASE 3) Encodes a nicotianamine synthase. O.I. C.G. H.G.
61.4 99.8 16.4 At1g47890 841206 AtRLP7 (Receptor Like Protein 7) F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMBOFAV O.I. C.G. H.G.
60.4 99.8 47.9 At1g11700 837714 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO O.I. C.G. H.G.
59.9 99.8 139.8 At5g54060 835489 UF3GT (udp-glucose:flavonoid 3-O-glucosyltransferase) F:transferase activity, transferring glycosyl groups;P:N-terminal protein myristoylation, response to sucrose stimulus;C:cellular_component unknown;PMBVFO O.I. C.G. H.G.
59.2 99.8 117.3 At4g33040 829441 glutaredoxin family protein F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:cellular_component unknown;PMFOB O.I. C.G. H.G.
59.1 99.8 53.4 At1g31820 840072 amino acid permease family protein F:cationic amino acid transmembrane transporter activity;P:transport, amino acid transport;C:membrane;BFMOPA O.I. C.G. H.G.
57.9 99.8 110.1 At1g03495 3766646 transferase/ transferase, transferring acyl groups other than amino-acyl groups F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:unknown;PF O.I. C.G. H.G.
55.3 99.8 49.6 At4g13900 3770199 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
54.5 99.8 47.1 At3g57540 824921 remorin family protein F:DNA binding;P:biological_process unknown;C:cellular_component unknown;PMO O.I. C.G. H.G.
54.3 99.8 64.7 At1g55760 842025 BTB/POZ domain-containing protein F:protein binding;P:biological_process unknown;C:unknown;MPOVF O.I. C.G. H.G.
54.0 99.8 172.2 At1g64360 842743 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:cellular_component unknown;P O.I. C.G. H.G.
53.5 99.8 86.9 At3g28540 822484 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;BOMFPAV O.I. C.G. H.G.
53.4 99.8 53.7 At2g03530 814882 UPS2 (UREIDE PERMEASE 2) Mediate high-affinity uracil and 5-FU (a toxic uracil analogue) transport when expressed in yeast and Xenopus oocytes.Involved in allantoin transport. O.I. C.G. H.G.
51.6 99.8 31.9 At3g10320 820194 transferase, transferring glycosyl groups F:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:cellular_component unknown;PMOBF O.I. C.G. H.G.
51.3 99.8 102.4 At1g62200 842516 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;BPMOF O.I. C.G. H.G.
50.9 99.8 45.9 At4g23880 828487 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPF O.I. C.G. H.G.
49.0 99.8 157.5 At5g17220 831586 ATGSTF12 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12) Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). Mutants display no pigments on leaves and stems. O.I. C.G. H.G.
48.8 99.8 25.1 At3g08870 820035 lectin protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
47.8 99.8 52.0 At4g04500 825780 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
47.2 99.8 43.4 At3g62590 825433 lipase class 3 family protein F:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;POFMB O.I. C.G. H.G.
46.9 99.8 318.1 At1g21000 838694 zinc-binding family protein F:binding;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
46.4 99.8 25.4 At1g48000 841218 MYB112 (myb domain protein 112) Encodes a putative transcription factor (MYB112). O.I. C.G. H.G.
46.0 99.8 42.7 At3g13672 820573 seven in absentia (SINA) family protein F:molecular_function unknown;P:multicellular organismal development, ubiquitin-dependent protein catabolic process;C:nucleus;MPO O.I. C.G. H.G.
45.4 99.8 108.8 At4g27300 828838 S-locus protein kinase, putative F:in 6 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
44.5 99.8 92.5 At4g24120 828512 YSL1 (YELLOW STRIPE LIKE 1) Member of a small family of oligopeptide transporters similar to the yellow stripe locus of maize (ZmYS1). O.I. C.G. H.G.
44.4 99.8 43.5 At2g29120 817460 ATGLR2.7 member of Putative ligand-gated ion channel subunit family O.I. C.G. H.G.
44.2 99.8 69.1 At2g35060 818071 KUP11 potassium transporter O.I. C.G. H.G.
44.2 99.8 43.8 At3g23110 821886 AtRLP37 (Receptor Like Protein 37) F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAV O.I. C.G. H.G.
43.1 99.8 46.0 At4g24450 828547 PWD (PHOSPHOGLUCAN, WATER DIKINASE) F:kinase activity, ATP binding;P:phosphorylation;C:chloroplast envelope;BAPOF O.I. C.G. H.G.
42.3 99.8 50.9 At3g49210 824082 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOMA O.I. C.G. H.G.
41.9 99.8 139.4 At1g56600 842114 AtGolS2 (Arabidopsis thaliana galactinol synthase 2) F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:carbohydrate biosynthetic process;C:cellular_component unknown;PMFVBO O.I. C.G. H.G.
40.7 99.8 84.5 At2g18950 816412 HPT1 (HOMOGENTISATE PHYTYLTRANSFERASE 1) Encodes homogentisate phytyltransferase involved in tocopherol biosynthesis. Has impact on seed longevity and plays a role in the adaptation to low temperature stress, notably phloem loading. O.I. C.G. H.G.
39.2 99.8 17.4 At4g29050 829026 lectin protein kinase family protein F:carbohydrate binding, kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
39.0 99.8 57.4 At1g02470 837812 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOP O.I. C.G. H.G.
38.9 99.8 39.3 At1g08230 837344 - - O.I. C.G. H.G.
38.3 99.8 108.4 At5g53420 835423 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
38.2 99.8 82.4 At5g39610 833957 ATNAC6 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 6) Encodes a NAC-domain transcription factor. Positively regulates aging-induced cell death and senescence in leaves. This gene is upregulated in response to salt stress in wildtype as well as NTHK1 transgenic lines although in the latter case the induction was drastically reduced. It was also upregulated by ABA, ACC and NAA treatment, although in the latter two cases, the induction occurred relatively late when compared with NaCl or ABA treatments. Note: this protein (AtNAC6) on occasion has also been referred to as AtNAC2, not to be confused with the AtNAC2 found at locus AT3G15510. O.I. C.G. H.G.
37.9 99.8 142.3 At1g35710 840475 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
37.7 99.7 39.4 At3g26220 822223 CYP71B3 cytochrome P450 monooxygenase O.I. C.G. H.G.
37.2 99.7 46.9 At5g10930 830960 CIPK5 (CBL-INTERACTING PROTEIN KINASE 5) Encodes CBL-interacting protein kinase 5 (CIPK5). O.I. C.G. H.G.
37.1 99.7 38.3 At3g21790 821733 UDP-glucoronosyl/UDP-glucosyl transferase family protein F:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity;P:metabolic process;C:cellular_component unknown;PMBOVF O.I. C.G. H.G.
36.0 99.7 40.1 At1g48260 841246 CIPK17 (CBL-INTERACTING PROTEIN KINASE 17) Encodes a member of the SNF1-related kinase (SnRK) gene family (SnRK3.21), which has also been reported as a member of the CBL-interacting protein kinases (CIPK17). O.I. C.G. H.G.
35.9 99.7 146.2 At1g22930 838900 T-complex protein 11 F:unknown;P:biological_process unknown;C:unknown;MOBFPAV O.I. C.G. H.G.
35.9 99.7 23.7 At1g79900 844329 BAC2 encodes a mitochondrial ornithine transporter that exports ornithine from the mitochondria to the cytosol O.I. C.G. H.G.
35.8 99.7 204.8 At5g42800 834291 DFR (DIHYDROFLAVONOL 4-REDUCTASE) dihydroflavonol reductase. Catalyzes the conversion of dihydroquercetin to leucocyanidin in the biosynthesis of anthocyanins. O.I. C.G. H.G.
35.7 99.7 137.1 At4g12280 826837 copper amine oxidase family protein F:amine oxidase activity, quinone binding, copper ion binding;P:cellular amine metabolic process;C:cellular_component unknown;FBMOPA O.I. C.G. H.G.
35.5 99.7 16.6 At1g69610 843297 structural constituent of ribosome F:structural constituent of ribosome;P:N-terminal protein myristoylation, translation;C:ribosome, intracellular;OPMFB O.I. C.G. H.G.
35.0 99.7 96.6 At5g16570 831519 GLN1 Encodes a cytosolic glutamine synthetase, the enzyme has high affinity with substrate ammonium O.I. C.G. H.G.
34.9 99.7 88.8 At4g37310 829886 CYP81H1 member of CYP81H O.I. C.G. H.G.
33.8 99.7 37.6 At3g22460 821817 OASA2 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1) Encodes a member of a family of genes with O-acetylserine(thiol)lyase activity. O.I. C.G. H.G.
33.7 99.7 21.9 At5g67310 836866 CYP81G1 member of CYP81G O.I. C.G. H.G.
33.6 99.7 75.8 At3g50770 824241 calmodulin-related protein, putative F:calcium ion binding;P:biological_process unknown;C:chloroplast;MFPOB O.I. C.G. H.G.
32.4 99.7 42.0 At3g25010 822092 AtRLP41 (Receptor Like Protein 41) F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAV O.I. C.G. H.G.
32.1 99.7 193.7 At1g80130 844353 binding F:binding;P:response to oxidative stress;C:membrane;BPOMFAV O.I. C.G. H.G.
32.1 99.7 64.8 At1g56650 842120 PAP1 (PRODUCTION OF ANTHOCYANIN PIGMENT 1) Encodes a putative MYB domain containing transcription factor involved in anthocyanin metabolism and radical scavenging. Essential for the sucrose-mediated expression of the dihydroflavonol reductase gene. O.I. C.G. H.G.
31.9 99.7 54.9 At4g39140 830069 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:N-terminal protein myristoylation;C:unknown;OPMFB O.I. C.G. H.G.
31.5 99.7 118.0 At3g26100 822208 regulator of chromosome condensation (RCC1) family protein F:Ran GTPase binding;P:biological_process unknown;C:unknown;MOBPFAV O.I. C.G. H.G.
31.2 99.7 17.5 At3g28100 822434 nodulin MtN21 family protein F:molecular_function unknown;P:biological_process unknown;C:membrane;BPOAMF O.I. C.G. H.G.
31.1 99.7 152.3 At5g06530 830541 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:unknown;C:plasma membrane;BOMFAPV O.I. C.G. H.G.
30.9 99.7 59.8 At4g25000 828603 AMY1 (ALPHA-AMYLASE-LIKE) Predicted to be secreted protein based on signalP prediction. Involved in starch mobilization. Mutants are defective in alpha-amylase activity. (Note: AMY1 has been found in the literature to be referred to as AMY3, which is not to be confused with AMY3/At1g69830). O.I. C.G. H.G.
30.7 99.7 228.2 At1g67360 843057 rubber elongation factor (REF) family protein F:unknown;P:biological_process unknown;C:vacuole;P O.I. C.G. H.G.
30.6 99.7 106.0 At5g17860 831654 CAX7 (calcium exchanger 7) F:cation:cation antiporter activity, calcium:sodium antiporter activity;P:cation transport;C:endomembrane system, integral to membrane;MBOFPA O.I. C.G. H.G.
30.5 99.7 41.4 At5g48410 834896 ATGLR1.3 member of Putative ligand-gated ion channel subunit family O.I. C.G. H.G.
30.4 99.7 615.4 At4g32940 829431 GAMMA-VPE (GAMMA VACUOLAR PROCESSING ENZYME) Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteinases that is expressed in vegetative organs and is upregulated in association with various types of cell death and under stressed conditions. They are essential in processing seed storage proteins and for mediating the susceptible response of toxin-induced cell death. O.I. C.G. H.G.
30.4 99.7 81.5 At4g10380 826630 NIP5 Essential for efficient Boron uptake and plant development under boron limitation. Also functions in arsenite transport and tolerance. O.I. C.G. H.G.
30.4 99.7 58.8 At5g45900 834630 APG7 (AUTOPHAGY 7) Component of autophagy conjugation pathway. Required for proper senescence. O.I. C.G. H.G.
30.0 99.7 14.3 At2g25440 817082 AtRLP20 (Receptor Like Protein 20) F:protein binding, kinase activity;P:signal transduction;C:endomembrane system;PMOBFAV O.I. C.G. H.G.
29.8 99.7 167.8 At3g44880 823622 ACD1 (ACCELERATED CELL DEATH 1) Encodes a pheide a oxygenase (PAO). Accelerated cell death (acd1) mutants show rapid, spreading necrotic responses to both virulent and avirulent Pseudomonas syringae pv. maculicola or pv. tomato pathogens and to ethylene. O.I. C.G. H.G.
29.3 99.7 31.9 At3g45290 823667 MLO3 (MILDEW RESISTANCE LOCUS O 3) A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO3 belongs to the clade IV, with AtMLO2, AtMLO6 and AtMLO12. The gene is expressed during early seedling growth, in primary root and lateral root primordia, in fruit abscission zone, in vascular system of cotyledons and in trichomes of young leaves,; it was not expressed in mature rosette leaves, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s). O.I. C.G. H.G.
29.2 99.7 70.2 At1g75410 843877 BLH3 (BEL1-LIKE HOMEODOMAIN 3) BEL1-like homeodomain 3 (BLH3) O.I. C.G. H.G.
29.0 99.7 18.8 At2g33080 817870 AtRLP28 (Receptor Like Protein 28) F:protein binding;P:signal transduction;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
28.6 99.7 105.4 At5g01820 831765 ATSR1 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 1) Encodes a CBL-interacting serine/threonine protein kinase. O.I. C.G. H.G.
28.3 99.7 128.2 At4g23140 828413 CRK6 (CYSTEINE-RICH RLK 6) Arabidopsis thaliana receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307) O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
302.3	100.0	151.0	At1g62760	842574	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:unknown;C:unknown;MOFBPVA	O.I.	C.G.	H.G.
276.0	100.0	397.2	At5g45890	834629	SAG12 (SENESCENCE-ASSOCIATED GENE 12)	Senescence-associated gene 12 (SAG12) encoding a cysteine protease influenced by cytokinin, auxin, and sugars.Localized to special vacuole found during senescence called senescence associated vacuoles which are different from central vacuole in the tonoplast composition and pH.	O.I.	C.G.	H.G.
133.9	99.9	184.4	At4g14090	827046	UDP-glucoronosyl/UDP-glucosyl transferase family protein	The At4g14090 encodes a anthocyanidin 5-O-glucosyltransferase specifically glucosylating the 5-position of the flavonoid A-ring.	O.I.	C.G.	H.G.
129.9	99.9	264.8	At1g69490	843282	NAP (NAC-like, activated by AP3/PI)	Encodes a member of the NAC transcription factor gene family. It is expressed in floral primordia and upregulated by AP3 and PI. Its expression is associated with leaf senescence.	O.I.	C.G.	H.G.
125.1	99.9	146.5	At1g66390	842957	MYB90 (MYB DOMAIN PROTEIN 90)	production of anthocyanin pigment 2 protein (PAP2)	O.I.	C.G.	H.G.
118.7	99.9	204.0	At4g22920	828391	NYE1 (NON-YELLOWING 1)	Similar to the tomato senescence-inducible chloroplast stay-green protein 1. It is upregulated during maximal senescence in the Arabidopsis life cycle, especially in senescent leaves.	O.I.	C.G.	H.G.
114.9	99.9	112.8	At1g54570	841899	esterase/lipase/thioesterase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity;P:unknown;C:chloroplast, plastoglobule;BMPOF	O.I.	C.G.	H.G.
111.8	99.9	54.4	At2g47190	819332	MYB2 (MYB DOMAIN PROTEIN 2)	Encodes a MYB transcription factor that possesses an R2R3 MYB DNA binding domain and is known to regulate the expression of salt- and dehydration-responsive genes. Has been shown to bind calmodulin.	O.I.	C.G.	H.G.
105.4	99.9	50.3	At3g26820	822297	esterase/lipase/thioesterase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity;P:biological_process unknown;C:unknown;BPOMF	O.I.	C.G.	H.G.
99.8	99.9	133.4	At2g25625	817103	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
97.7	99.9	120.9	At4g00700	828031	C2 domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF	O.I.	C.G.	H.G.
95.8	99.9	179.1	At5g13800	831225	hydrolase, alpha/beta fold family protein	F:hydrolase activity, pheophytinase activity;P:chlorophyll catabolic process;C:chloroplast;BOPMAF	O.I.	C.G.	H.G.
93.2	99.9	270.7	At5g39520	833948	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPO	O.I.	C.G.	H.G.
92.1	99.9	49.7	At5g59050	836022	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
86.0	99.9	70.1	At3g23790	821961	AMP-binding protein, putative	F:catalytic activity;P:metabolic process;C:chloroplast envelope;BOMFPAV	O.I.	C.G.	H.G.
81.9	99.9	150.0	At5g45380	834574	sodium:solute symporter family protein	F:urea transmembrane transporter activity, solute:sodium symporter activity;P:cellular response to nitrogen starvation;C:plasma membrane;BOMFAP	O.I.	C.G.	H.G.
79.8	99.9	69.5	At4g24000	828500	ATCSLG2	encodes a protein similar to cellulose synthase	O.I.	C.G.	H.G.
76.2	99.9	130.0	At4g32250	829358	protein kinase family protein	F:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;MOPBFVA	O.I.	C.G.	H.G.
75.3	99.9	36.6	At5g39030	833895	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
74.4	99.9	238.7	At3g03470	821250	CYP89A9	member of CYP89A	O.I.	C.G.	H.G.
72.9	99.9	176.0	At5g18130	831931	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
70.6	99.9	95.2	At1g34040	840301	alliinase family protein	F:pyridoxal phosphate binding, carbon-sulfur lyase activity, catalytic activity;P:biological_process unknown;C:endomembrane system;PBOAF	O.I.	C.G.	H.G.
69.6	99.9	187.0	At3g10420	820206	sporulation protein-related	F:nucleoside-triphosphatase activity, nucleotide binding;P:unknown;C:chloroplast;BOPAMF	O.I.	C.G.	H.G.
66.8	99.8	17.9	At3g24900	822088	AtRLP39 (Receptor Like Protein 39)	F:protein binding;P:signal transduction, defense response;C:endomembrane system;PMOBFAV	O.I.	C.G.	H.G.
66.0	99.8	35.3	At3g29590	822623	AT5MAT	At3g29590 (At5MAT) encodes a malonyl-CoA:anthocyanidin 5-O-glucoside-6"-O-malonyltransferase that is coordinately expressed with a epistatic 5-O-anthocyanidin glucosyltransferase (At4g14090). The enzyme is involved in the malonylation of anthocyanins in Arabidopsis.	O.I.	C.G.	H.G.
64.3	99.8	61.7	At3g57680	824937	peptidase S41 family protein	F:serine-type peptidase activity, protein binding;P:proteolysis, intracellular signaling cascade;C:chloroplast thylakoid lumen, membrane;OBPM	O.I.	C.G.	H.G.
63.9	99.8	86.6	At3g03870	821099	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
62.1	99.8	99.8	At1g09240	837444	NAS3 (NICOTIANAMINE SYNTHASE 3)	Encodes a nicotianamine synthase.	O.I.	C.G.	H.G.
61.4	99.8	16.4	At1g47890	841206	AtRLP7 (Receptor Like Protein 7)	F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMBOFAV	O.I.	C.G.	H.G.
60.4	99.8	47.9	At1g11700	837714	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO	O.I.	C.G.	H.G.
59.9	99.8	139.8	At5g54060	835489	UF3GT (udp-glucose:flavonoid 3-O-glucosyltransferase)	F:transferase activity, transferring glycosyl groups;P:N-terminal protein myristoylation, response to sucrose stimulus;C:cellular_component unknown;PMBVFO	O.I.	C.G.	H.G.
59.2	99.8	117.3	At4g33040	829441	glutaredoxin family protein	F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:cellular_component unknown;PMFOB	O.I.	C.G.	H.G.
59.1	99.8	53.4	At1g31820	840072	amino acid permease family protein	F:cationic amino acid transmembrane transporter activity;P:transport, amino acid transport;C:membrane;BFMOPA	O.I.	C.G.	H.G.
57.9	99.8	110.1	At1g03495	3766646	transferase/ transferase, transferring acyl groups other than amino-acyl groups	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:unknown;PF	O.I.	C.G.	H.G.
55.3	99.8	49.6	At4g13900	3770199	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
54.5	99.8	47.1	At3g57540	824921	remorin family protein	F:DNA binding;P:biological_process unknown;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
54.3	99.8	64.7	At1g55760	842025	BTB/POZ domain-containing protein	F:protein binding;P:biological_process unknown;C:unknown;MPOVF	O.I.	C.G.	H.G.
54.0	99.8	172.2	At1g64360	842743	unknown protein	F:molecular_function unknown;P:response to oxidative stress;C:cellular_component unknown;P	O.I.	C.G.	H.G.
53.5	99.8	86.9	At3g28540	822484	AAA-type ATPase family protein	F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;BOMFPAV	O.I.	C.G.	H.G.
53.4	99.8	53.7	At2g03530	814882	UPS2 (UREIDE PERMEASE 2)	Mediate high-affinity uracil and 5-FU (a toxic uracil analogue) transport when expressed in yeast and Xenopus oocytes.Involved in allantoin transport.	O.I.	C.G.	H.G.
51.6	99.8	31.9	At3g10320	820194	transferase, transferring glycosyl groups	F:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:cellular_component unknown;PMOBF	O.I.	C.G.	H.G.
51.3	99.8	102.4	At1g62200	842516	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport;C:membrane;BPMOF	O.I.	C.G.	H.G.
50.9	99.8	45.9	At4g23880	828487	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPF	O.I.	C.G.	H.G.
49.0	99.8	157.5	At5g17220	831586	ATGSTF12 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12)	Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). Mutants display no pigments on leaves and stems.	O.I.	C.G.	H.G.
48.8	99.8	25.1	At3g08870	820035	lectin protein kinase, putative	F:kinase activity;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
47.8	99.8	52.0	At4g04500	825780	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
47.2	99.8	43.4	At3g62590	825433	lipase class 3 family protein	F:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;POFMB	O.I.	C.G.	H.G.
46.9	99.8	318.1	At1g21000	838694	zinc-binding family protein	F:binding;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
46.4	99.8	25.4	At1g48000	841218	MYB112 (myb domain protein 112)	Encodes a putative transcription factor (MYB112).	O.I.	C.G.	H.G.
46.0	99.8	42.7	At3g13672	820573	seven in absentia (SINA) family protein	F:molecular_function unknown;P:multicellular organismal development, ubiquitin-dependent protein catabolic process;C:nucleus;MPO	O.I.	C.G.	H.G.
45.4	99.8	108.8	At4g27300	828838	S-locus protein kinase, putative	F:in 6 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
44.5	99.8	92.5	At4g24120	828512	YSL1 (YELLOW STRIPE LIKE 1)	Member of a small family of oligopeptide transporters similar to the yellow stripe locus of maize (ZmYS1).	O.I.	C.G.	H.G.
44.4	99.8	43.5	At2g29120	817460	ATGLR2.7	member of Putative ligand-gated ion channel subunit family	O.I.	C.G.	H.G.
44.2	99.8	69.1	At2g35060	818071	KUP11	potassium transporter	O.I.	C.G.	H.G.
44.2	99.8	43.8	At3g23110	821886	AtRLP37 (Receptor Like Protein 37)	F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAV	O.I.	C.G.	H.G.
43.1	99.8	46.0	At4g24450	828547	PWD (PHOSPHOGLUCAN, WATER DIKINASE)	F:kinase activity, ATP binding;P:phosphorylation;C:chloroplast envelope;BAPOF	O.I.	C.G.	H.G.
42.3	99.8	50.9	At3g49210	824082	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOMA	O.I.	C.G.	H.G.
41.9	99.8	139.4	At1g56600	842114	AtGolS2 (Arabidopsis thaliana galactinol synthase 2)	F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:carbohydrate biosynthetic process;C:cellular_component unknown;PMFVBO	O.I.	C.G.	H.G.
40.7	99.8	84.5	At2g18950	816412	HPT1 (HOMOGENTISATE PHYTYLTRANSFERASE 1)	Encodes homogentisate phytyltransferase involved in tocopherol biosynthesis. Has impact on seed longevity and plays a role in the adaptation to low temperature stress, notably phloem loading.	O.I.	C.G.	H.G.
39.2	99.8	17.4	At4g29050	829026	lectin protein kinase family protein	F:carbohydrate binding, kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
39.0	99.8	57.4	At1g02470	837812	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOP	O.I.	C.G.	H.G.
38.9	99.8	39.3	At1g08230	837344	-	-	O.I.	C.G.	H.G.
38.3	99.8	108.4	At5g53420	835423	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
38.2	99.8	82.4	At5g39610	833957	ATNAC6 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 6)	Encodes a NAC-domain transcription factor. Positively regulates aging-induced cell death and senescence in leaves. This gene is upregulated in response to salt stress in wildtype as well as NTHK1 transgenic lines although in the latter case the induction was drastically reduced. It was also upregulated by ABA, ACC and NAA treatment, although in the latter two cases, the induction occurred relatively late when compared with NaCl or ABA treatments. Note: this protein (AtNAC6) on occasion has also been referred to as AtNAC2, not to be confused with the AtNAC2 found at locus AT3G15510.	O.I.	C.G.	H.G.
37.9	99.8	142.3	At1g35710	840475	leucine-rich repeat transmembrane protein kinase, putative	F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
37.7	99.7	39.4	At3g26220	822223	CYP71B3	cytochrome P450 monooxygenase	O.I.	C.G.	H.G.
37.2	99.7	46.9	At5g10930	830960	CIPK5 (CBL-INTERACTING PROTEIN KINASE 5)	Encodes CBL-interacting protein kinase 5 (CIPK5).	O.I.	C.G.	H.G.
37.1	99.7	38.3	At3g21790	821733	UDP-glucoronosyl/UDP-glucosyl transferase family protein	F:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity;P:metabolic process;C:cellular_component unknown;PMBOVF	O.I.	C.G.	H.G.
36.0	99.7	40.1	At1g48260	841246	CIPK17 (CBL-INTERACTING PROTEIN KINASE 17)	Encodes a member of the SNF1-related kinase (SnRK) gene family (SnRK3.21), which has also been reported as a member of the CBL-interacting protein kinases (CIPK17).	O.I.	C.G.	H.G.
35.9	99.7	146.2	At1g22930	838900	T-complex protein 11	F:unknown;P:biological_process unknown;C:unknown;MOBFPAV	O.I.	C.G.	H.G.
35.9	99.7	23.7	At1g79900	844329	BAC2	encodes a mitochondrial ornithine transporter that exports ornithine from the mitochondria to the cytosol	O.I.	C.G.	H.G.
35.8	99.7	204.8	At5g42800	834291	DFR (DIHYDROFLAVONOL 4-REDUCTASE)	dihydroflavonol reductase. Catalyzes the conversion of dihydroquercetin to leucocyanidin in the biosynthesis of anthocyanins.	O.I.	C.G.	H.G.
35.7	99.7	137.1	At4g12280	826837	copper amine oxidase family protein	F:amine oxidase activity, quinone binding, copper ion binding;P:cellular amine metabolic process;C:cellular_component unknown;FBMOPA	O.I.	C.G.	H.G.
35.5	99.7	16.6	At1g69610	843297	structural constituent of ribosome	F:structural constituent of ribosome;P:N-terminal protein myristoylation, translation;C:ribosome, intracellular;OPMFB	O.I.	C.G.	H.G.
35.0	99.7	96.6	At5g16570	831519	GLN1	Encodes a cytosolic glutamine synthetase, the enzyme has high affinity with substrate ammonium	O.I.	C.G.	H.G.
34.9	99.7	88.8	At4g37310	829886	CYP81H1	member of CYP81H	O.I.	C.G.	H.G.
33.8	99.7	37.6	At3g22460	821817	OASA2 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1)	Encodes a member of a family of genes with O-acetylserine(thiol)lyase activity.	O.I.	C.G.	H.G.
33.7	99.7	21.9	At5g67310	836866	CYP81G1	member of CYP81G	O.I.	C.G.	H.G.
33.6	99.7	75.8	At3g50770	824241	calmodulin-related protein, putative	F:calcium ion binding;P:biological_process unknown;C:chloroplast;MFPOB	O.I.	C.G.	H.G.
32.4	99.7	42.0	At3g25010	822092	AtRLP41 (Receptor Like Protein 41)	F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAV	O.I.	C.G.	H.G.
32.1	99.7	193.7	At1g80130	844353	binding	F:binding;P:response to oxidative stress;C:membrane;BPOMFAV	O.I.	C.G.	H.G.
32.1	99.7	64.8	At1g56650	842120	PAP1 (PRODUCTION OF ANTHOCYANIN PIGMENT 1)	Encodes a putative MYB domain containing transcription factor involved in anthocyanin metabolism and radical scavenging. Essential for the sucrose-mediated expression of the dihydroflavonol reductase gene.	O.I.	C.G.	H.G.
31.9	99.7	54.9	At4g39140	830069	protein binding / zinc ion binding	F:protein binding, zinc ion binding;P:N-terminal protein myristoylation;C:unknown;OPMFB	O.I.	C.G.	H.G.
31.5	99.7	118.0	At3g26100	822208	regulator of chromosome condensation (RCC1) family protein	F:Ran GTPase binding;P:biological_process unknown;C:unknown;MOBPFAV	O.I.	C.G.	H.G.
31.2	99.7	17.5	At3g28100	822434	nodulin MtN21 family protein	F:molecular_function unknown;P:biological_process unknown;C:membrane;BPOAMF	O.I.	C.G.	H.G.
31.1	99.7	152.3	At5g06530	830541	ABC transporter family protein	F:ATPase activity, coupled to transmembrane movement of substances;P:unknown;C:plasma membrane;BOMFAPV	O.I.	C.G.	H.G.
30.9	99.7	59.8	At4g25000	828603	AMY1 (ALPHA-AMYLASE-LIKE)	Predicted to be secreted protein based on signalP prediction. Involved in starch mobilization. Mutants are defective in alpha-amylase activity. (Note: AMY1 has been found in the literature to be referred to as AMY3, which is not to be confused with AMY3/At1g69830).	O.I.	C.G.	H.G.
30.7	99.7	228.2	At1g67360	843057	rubber elongation factor (REF) family protein	F:unknown;P:biological_process unknown;C:vacuole;P	O.I.	C.G.	H.G.
30.6	99.7	106.0	At5g17860	831654	CAX7 (calcium exchanger 7)	F:cation:cation antiporter activity, calcium:sodium antiporter activity;P:cation transport;C:endomembrane system, integral to membrane;MBOFPA	O.I.	C.G.	H.G.
30.5	99.7	41.4	At5g48410	834896	ATGLR1.3	member of Putative ligand-gated ion channel subunit family	O.I.	C.G.	H.G.
30.4	99.7	615.4	At4g32940	829431	GAMMA-VPE (GAMMA VACUOLAR PROCESSING ENZYME)	Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteinases that is expressed in vegetative organs and is upregulated in association with various types of cell death and under stressed conditions. They are essential in processing seed storage proteins and for mediating the susceptible response of toxin-induced cell death.	O.I.	C.G.	H.G.
30.4	99.7	81.5	At4g10380	826630	NIP5	Essential for efficient Boron uptake and plant development under boron limitation. Also functions in arsenite transport and tolerance.	O.I.	C.G.	H.G.
30.4	99.7	58.8	At5g45900	834630	APG7 (AUTOPHAGY 7)	Component of autophagy conjugation pathway. Required for proper senescence.	O.I.	C.G.	H.G.
30.0	99.7	14.3	At2g25440	817082	AtRLP20 (Receptor Like Protein 20)	F:protein binding, kinase activity;P:signal transduction;C:endomembrane system;PMOBFAV	O.I.	C.G.	H.G.
29.8	99.7	167.8	At3g44880	823622	ACD1 (ACCELERATED CELL DEATH 1)	Encodes a pheide a oxygenase (PAO). Accelerated cell death (acd1) mutants show rapid, spreading necrotic responses to both virulent and avirulent Pseudomonas syringae pv. maculicola or pv. tomato pathogens and to ethylene.	O.I.	C.G.	H.G.
29.3	99.7	31.9	At3g45290	823667	MLO3 (MILDEW RESISTANCE LOCUS O 3)	A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO3 belongs to the clade IV, with AtMLO2, AtMLO6 and AtMLO12. The gene is expressed during early seedling growth, in primary root and lateral root primordia, in fruit abscission zone, in vascular system of cotyledons and in trichomes of young leaves,; it was not expressed in mature rosette leaves, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).	O.I.	C.G.	H.G.
29.2	99.7	70.2	At1g75410	843877	BLH3 (BEL1-LIKE HOMEODOMAIN 3)	BEL1-like homeodomain 3 (BLH3)	O.I.	C.G.	H.G.
29.0	99.7	18.8	At2g33080	817870	AtRLP28 (Receptor Like Protein 28)	F:protein binding;P:signal transduction;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
28.6	99.7	105.4	At5g01820	831765	ATSR1 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 1)	Encodes a CBL-interacting serine/threonine protein kinase.	O.I.	C.G.	H.G.
28.3	99.7	128.2	At4g23140	828413	CRK6 (CYSTEINE-RICH RLK 6)	Arabidopsis thaliana receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307)	O.I.	C.G.	H.G.

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GSM ID	GSM131537
Assay name	ATGE_25_A
GSE experiment	GSE5630: AtGenExpress: Developmental series (leaves)

Microarray experiments to specifically-expressed genes

GSM ID GSM131537 Assay name ATGE_25_A GSE experiment GSE5630: AtGenExpress: Developmental series (leaves)

GSM ID GSM131537

Assay name ATGE_25_A

GSE experiment GSE5630: AtGenExpress: Developmental series (leaves)