CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM131490

Assay name ATGE_100_B

GSE experiment GSE5629: AtGenExpress: Developmental series (seedlings and whole plants)

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
45.5 99.8 251.9 At1g35140 840399 PHI-1 (PHOSPHATE-INDUCED 1) At1g35140 (At1g35140/T32G9_32) mRNA, complete cds O.I. C.G. H.G.
43.3 99.8 45.2 At5g58120 835924 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFA O.I. C.G. H.G.
24.2 99.6 189.5 At1g57980 842165 purine permease-related F:purine transmembrane transporter activity;P:unknown;C:unknown;PBO O.I. C.G. H.G.
22.0 99.6 64.6 At4g18010 827526 AT5PTASE2 (MYO-INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 2) Encodes an inositol polyphosphate 5-phosphatase that appears to have Type I activity. It can dephosphorylate IP3(inositol(1,4,5)P3) and IP4 (inositol(1,3,4,5)P4), but it does not appear to be active against phosphatidylinositol 4,5 bisphosphate. Overexpression of this gene renders plants insensitive to ABA in germination and growth assays. O.I. C.G. H.G.
19.5 99.6 60.2 At1g02660 839544 lipase class 3 family protein F:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;MOFPBV O.I. C.G. H.G.
19.4 99.6 94.7 At2g44500 819057 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PO O.I. C.G. H.G.
18.0 99.5 175.1 At4g24570 828559 mitochondrial substrate carrier family protein F:binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPO O.I. C.G. H.G.
17.4 99.5 51.5 At5g24030 832468 SLAH3 (SLAC1 HOMOLOGUE 3) Encodes a protein with ten predicted transmembrane helices. The SLAH3 protein has similarity to the SLAC1 protein involved in ion homeostasis in guard cells. Although it is not expressed in guard cells, it can complement an slac1-2 mutant suggesting that it performs a similar function. SLAH3:GFP localizes to the plasma membrane. O.I. C.G. H.G.
17.3 99.5 92.9 At1g21130 838709 O-methyltransferase, putative F:methyltransferase activity, protein dimerization activity, O-methyltransferase activity;P:unknown;C:cytosol;PBFOM O.I. C.G. H.G.
16.1 99.5 101.5 At1g33600 840254 leucine-rich repeat family protein F:protein binding;P:signal transduction;C:cell wall, membrane, plant-type cell wall;PMBOFAV O.I. C.G. H.G.
16.0 99.5 123.7 At3g04640 819622 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;BMPOFVA O.I. C.G. H.G.
15.9 99.5 153.6 At3g55980 824764 SZF1 (SALT-INDUCIBLE ZINC FINGER 1) F:transcription factor activity;P:response to chitin, regulation of transcription;C:cellular_component unknown;MOPBFAV O.I. C.G. H.G.
15.9 99.5 86.9 At5g45340 834570 CYP707A3 Encodes a protein with ABA 8'-hydroxylase activity; involved in ABA catabolism. Mutant analyses show that disruption in the gene results in more drought tolerance whereas overexpression results in increased transpiration rate and reduced drought tolerance. Gene involved in postgermination growth. Plant P450 CYP707A3, ABA 8'-hydroxylase, binds enantioselectively (+)-ABA but not (-)-ABA, whereas the enzyme binds both enantiomers of AHI1 (a structural ABA analogue used as ABA 8'-hydroxylase competitive inhibitor). O.I. C.G. H.G.
15.9 99.5 50.7 At1g35350 840424 - F:unknown;P:unknown;C:integral to membrane;FMPOB O.I. C.G. H.G.
15.8 99.5 49.7 At4g28085 828924 unknown protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P O.I. C.G. H.G.
14.5 99.4 67.5 At3g54810 824646 zinc finger (GATA type) family protein Encodes a protein containing a GATA type zinc finger domain that is expressed in the embryo axis and involved in germination. Mutants have a reduced rate of germination even when stratified. O.I. C.G. H.G.
14.4 99.4 65.5 At1g69890 843325 - F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
14.3 99.4 75.7 At1g21910 838793 AP2 domain-containing transcription factor family protein encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. O.I. C.G. H.G.
14.1 99.4 78.8 At5g57220 835828 CYP81F2 member of CYP81F, involved in glucosinolate metabolism. Mutants had impaired resistance to fungi. O.I. C.G. H.G.
14.1 99.4 35.4 At3g59080 825077 aspartyl protease family protein F:DNA binding, aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PMFO O.I. C.G. H.G.
13.5 99.4 31.8 At1g56510 842104 WRR4 (WHITE RUST RESISTANCE 4) TIR-NB-LRR protein that confers resistance to four races of Albugo candida. O.I. C.G. H.G.
13.4 99.4 173.5 At3g45970 823740 ATEXLA1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE A1) member of EXPANSIN-LIKE. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) O.I. C.G. H.G.
13.3 99.4 297.2 At4g08950 826473 EXO (EXORDIUM) F:molecular_function unknown;P:response to brassinosteroid stimulus;C:cell wall, plant-type cell wall;PB O.I. C.G. H.G.
13.2 99.4 31.9 At4g16563 827356 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:plant-type cell wall;PMFO O.I. C.G. H.G.
12.8 99.3 255.5 At3g47340 823888 ASN1 (GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1) encodes a glutamine-dependent asparagine synthetase, the predicted ASN1 peptide contains a purF-type glutamine-binding domain, and is expressed predominantly in shoot tissues, where light has a negative effect on its mRNA accumulation. Expression is induced within 3 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell. O.I. C.G. H.G.
12.5 99.3 30.6 At1g70090 843345 LGT8 (GLUCOSYL TRANSFERASE FAMILY 8) Encodes a protein with putative galacturonosyltransferase activity. O.I. C.G. H.G.
12.2 99.3 99.7 At4g19420 827683 pectinacetylesterase family protein F:carboxylesterase activity;P:biological_process unknown;C:endomembrane system;PMOBA O.I. C.G. H.G.
12.2 99.3 61.3 At1g72900 843621 disease resistance protein (TIR-NBS class), putative F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PBMO O.I. C.G. H.G.
12.1 99.3 32.8 At5g25240 832595 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
12.0 99.3 55.8 At1g77210 844057 sugar transporter, putative F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:plasma membrane, membrane;BFMPOA O.I. C.G. H.G.
11.7 99.3 201.0 At3g48360 823994 BT2 (BTB AND TAZ DOMAIN PROTEIN 2) encodes a protein (BT2) that is an essential component of the TAC1-mediated telomerase activation pathway. Acts redundantly with BT3 and BT1 during female gametophyte development and with BT3 during male gametophyte development. O.I. C.G. H.G.
11.4 99.3 267.5 At2g15960 816091 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
11.4 99.3 65.8 At2g01180 814646 ATPAP1 (PHOSPHATIDIC ACID PHOSPHATASE 1) Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves. O.I. C.G. H.G.
11.3 99.3 98.0 At3g19680 821505 unknown protein F:unknown;P:unknown;C:plasma membrane;OPMBF O.I. C.G. H.G.
11.3 99.3 73.5 At5g37770 833755 TCH2 (TOUCH 2) Encodes a protein with 40% similarity to calmodulin. Binds Ca(2+) and, as a consequence, undergoes conformational changes. CML24 expression occurs in all major organs, and transcript levels are increased from 2- to 15-fold in plants subjected to touch, darkness, heat, cold, hydrogen peroxide, abscisic acid (ABA), and indole-3-acetic acid. However, CML24 protein accumulation changes were not detectable. The putative CML24 regulatory region confers reporter expression at sites of predicted mechanical stress; in regions undergoing growth; in vascular tissues and various floral organs; and in stomata, trichomes, and hydathodes. CML24-underexpressing transgenics are resistant to ABA inhibition of germination and seedling growth, are defective in long-day induction of flowering, and have enhanced tolerance to CoCl(2), molybdic acid, ZnSO(4), and MgCl(2). O.I. C.G. H.G.
11.3 99.3 46.1 At1g18570 838438 MYB51 (MYB DOMAIN PROTEIN 51) Encodes a member of the R2R3-MYB transcription family. Involved in indole glucosinolate biosynthesis. O.I. C.G. H.G.
11.3 99.3 18.9 At2g07777 2745461 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
11.2 99.2 57.9 At2g41640 818762 transferase, transferring glycosyl groups F:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:unknown;PMOBF O.I. C.G. H.G.
10.8 99.2 50.2 At3g49790 824141 ATP binding F:ATP binding;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
10.8 99.2 44.3 At1g54740 841915 - F:molecular_function unknown;P:biological_process unknown;C:unknown;OPMBF O.I. C.G. H.G.
10.6 99.2 42.3 At1g61100 842403 disease resistance protein (TIR class), putative F:unknown;P:defense response;C:cellular_component unknown;MOFPBVA O.I. C.G. H.G.
10.5 99.2 68.5 At2g27500 817295 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to plasma membrane, nucleus, cytoplasm;PFO O.I. C.G. H.G.
10.4 99.2 23.8 At3g02140 821182 TMAC2 (TWO OR MORE ABRES-CONTAINING GENE 2) Encodes a protein that acts in the nucleus and is an important negative regulator of ABA and salt stress responses, and could play a critical role in controlling root elongation, floral initiation and starch degradation. O.I. C.G. H.G.
10.3 99.2 44.7 At5g24160 832482 SQE6 (SQUALENE MONOXYGENASE 6) F:squalene monooxygenase activity, oxidoreductase activity, FAD binding;P:sterol biosynthetic process;C:endomembrane system, integral to membrane;OBFMPA O.I. C.G. H.G.
10.2 99.2 36.6 At3g44630 823589 disease resistance protein RPP1-WsB-like (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:N-terminal protein myristoylation, defense response;C:intrinsic to membrane;PMBOFAV O.I. C.G. H.G.
10.1 99.2 50.9 At5g54380 835526 THE1 (THESEUS1) F:protein kinase activity, kinase activity;P:protein amino acid autophosphorylation;C:plasma membrane;MPOBFVA O.I. C.G. H.G.
10.0 99.2 172.3 At2g39570 818542 ACT domain-containing protein F:amino acid binding;P:metabolic process;C:unknown;POB O.I. C.G. H.G.
9.9 99.1 195.5 At3g57450 824912 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
9.9 99.1 160.8 At5g67300 836865 MYBR1 (MYB DOMAIN PROTEIN R1) Member of the R2R3 factor MYB gene family involved in mediating plant responses to a variety of abiotic stimiuli. O.I. C.G. H.G.
9.8 99.1 65.0 At3g57530 824920 CPK32 (CALCIUM-DEPENDENT PROTEIN KINASE 32) Calcium-dependent Protein Kinase. ABA signaling component that regulates the ABA-responsive gene expression via ABF4. AtCPK32 has autophosphorylation activity and can phosphorylate ABF4 in vitro O.I. C.G. H.G.
9.7 99.1 15.4 At1g63750 842679 ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding F:protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:defense response, apoptosis;C:unknown;PMBOFVA O.I. C.G. H.G.
9.6 99.1 93.4 At1g70290 843365 ATTPS8 Encodes an enzyme putatively involved in trehalose biosynthesis. Though the protein has both trehalose-6-phosphate synthase (TPS)-like and trehalose-6-phosphate phosphatase (TPP)-like domains, neither activity has been detected in enzymatic assays nor has the protein been able to complement yeast TPS or TPP mutants. O.I. C.G. H.G.
9.5 99.1 345.8 At5g57560 835860 TCH4 (Touch 4) Encodes a cell wall-modifying enzyme, rapidly upregulated in response to environmental stimuli O.I. C.G. H.G.
9.5 99.1 45.3 At1g66160 842931 U-box domain-containing protein F:ubiquitin-protein ligase activity, binding;P:response to chitin;C:ubiquitin ligase complex;PMOFBV O.I. C.G. H.G.
9.4 99.1 256.7 At1g11260 837667 STP1 (SUGAR TRANSPORTER 1) Encodes a H+/hexose cotransporter. O.I. C.G. H.G.
9.4 99.1 186.8 At1g19770 838565 ATPUP14 Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane. O.I. C.G. H.G.
9.2 99.1 47.2 At5g66210 836753 CPK28 member of Calcium Dependent Protein Kinase O.I. C.G. H.G.
9.2 99.1 37.7 At3g06080 819781 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
9.1 99.1 198.3 At3g57520 824919 AtSIP2 (Arabidopsis thaliana seed imbibition 2) F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:unknown;C:cellular_component unknown;PFBAO O.I. C.G. H.G.
9.1 99.1 144.7 At1g55450 841992 embryo-abundant protein-related F:methyltransferase activity;P:response to salt stress;C:unknown;BPFMOA O.I. C.G. H.G.
9.1 99.1 101.6 At2g17230 816228 EXL5 (EXORDIUM LIKE 5) F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PB O.I. C.G. H.G.
9.1 99.1 37.9 At4g01330 828117 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. C.G. H.G.
8.9 99.0 128.0 At1g66180 842933 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PFOM O.I. C.G. H.G.
8.9 99.0 44.6 At2g25200 817058 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
8.8 99.0 94.6 At4g23180 828417 CRK10 (CYSTEINE-RICH RLK10) Encodes a receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307) O.I. C.G. H.G.
8.8 99.0 27.7 At1g61667 842463 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO O.I. C.G. H.G.
8.7 99.0 61.9 At3g50060 824168 MYB77 Encodes a member of the R2R3 transcription factor gene family. Expressed in response to potassium deprivation and auxin. Involved in lateral root development. Interacts with ARF7 and regulates the expression of some auxin responsive genes. O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
45.5	99.8	251.9	At1g35140	840399	PHI-1 (PHOSPHATE-INDUCED 1)	At1g35140 (At1g35140/T32G9_32) mRNA, complete cds	O.I.	C.G.	H.G.
43.3	99.8	45.2	At5g58120	835924	disease resistance protein (TIR-NBS-LRR class), putative	F:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFA	O.I.	C.G.	H.G.
24.2	99.6	189.5	At1g57980	842165	purine permease-related	F:purine transmembrane transporter activity;P:unknown;C:unknown;PBO	O.I.	C.G.	H.G.
22.0	99.6	64.6	At4g18010	827526	AT5PTASE2 (MYO-INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 2)	Encodes an inositol polyphosphate 5-phosphatase that appears to have Type I activity. It can dephosphorylate IP3(inositol(1,4,5)P3) and IP4 (inositol(1,3,4,5)P4), but it does not appear to be active against phosphatidylinositol 4,5 bisphosphate. Overexpression of this gene renders plants insensitive to ABA in germination and growth assays.	O.I.	C.G.	H.G.
19.5	99.6	60.2	At1g02660	839544	lipase class 3 family protein	F:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;MOFPBV	O.I.	C.G.	H.G.
19.4	99.6	94.7	At2g44500	819057	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PO	O.I.	C.G.	H.G.
18.0	99.5	175.1	At4g24570	828559	mitochondrial substrate carrier family protein	F:binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPO	O.I.	C.G.	H.G.
17.4	99.5	51.5	At5g24030	832468	SLAH3 (SLAC1 HOMOLOGUE 3)	Encodes a protein with ten predicted transmembrane helices. The SLAH3 protein has similarity to the SLAC1 protein involved in ion homeostasis in guard cells. Although it is not expressed in guard cells, it can complement an slac1-2 mutant suggesting that it performs a similar function. SLAH3:GFP localizes to the plasma membrane.	O.I.	C.G.	H.G.
17.3	99.5	92.9	At1g21130	838709	O-methyltransferase, putative	F:methyltransferase activity, protein dimerization activity, O-methyltransferase activity;P:unknown;C:cytosol;PBFOM	O.I.	C.G.	H.G.
16.1	99.5	101.5	At1g33600	840254	leucine-rich repeat family protein	F:protein binding;P:signal transduction;C:cell wall, membrane, plant-type cell wall;PMBOFAV	O.I.	C.G.	H.G.
16.0	99.5	123.7	At3g04640	819622	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;BMPOFVA	O.I.	C.G.	H.G.
15.9	99.5	153.6	At3g55980	824764	SZF1 (SALT-INDUCIBLE ZINC FINGER 1)	F:transcription factor activity;P:response to chitin, regulation of transcription;C:cellular_component unknown;MOPBFAV	O.I.	C.G.	H.G.
15.9	99.5	86.9	At5g45340	834570	CYP707A3	Encodes a protein with ABA 8'-hydroxylase activity; involved in ABA catabolism. Mutant analyses show that disruption in the gene results in more drought tolerance whereas overexpression results in increased transpiration rate and reduced drought tolerance. Gene involved in postgermination growth. Plant P450 CYP707A3, ABA 8'-hydroxylase, binds enantioselectively (+)-ABA but not (-)-ABA, whereas the enzyme binds both enantiomers of AHI1 (a structural ABA analogue used as ABA 8'-hydroxylase competitive inhibitor).	O.I.	C.G.	H.G.
15.9	99.5	50.7	At1g35350	840424	-	F:unknown;P:unknown;C:integral to membrane;FMPOB	O.I.	C.G.	H.G.
15.8	99.5	49.7	At4g28085	828924	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
14.5	99.4	67.5	At3g54810	824646	zinc finger (GATA type) family protein	Encodes a protein containing a GATA type zinc finger domain that is expressed in the embryo axis and involved in germination. Mutants have a reduced rate of germination even when stratified.	O.I.	C.G.	H.G.
14.4	99.4	65.5	At1g69890	843325	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
14.3	99.4	75.7	At1g21910	838793	AP2 domain-containing transcription factor family protein	encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.	O.I.	C.G.	H.G.
14.1	99.4	78.8	At5g57220	835828	CYP81F2	member of CYP81F, involved in glucosinolate metabolism. Mutants had impaired resistance to fungi.	O.I.	C.G.	H.G.
14.1	99.4	35.4	At3g59080	825077	aspartyl protease family protein	F:DNA binding, aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PMFO	O.I.	C.G.	H.G.
13.5	99.4	31.8	At1g56510	842104	WRR4 (WHITE RUST RESISTANCE 4)	TIR-NB-LRR protein that confers resistance to four races of Albugo candida.	O.I.	C.G.	H.G.
13.4	99.4	173.5	At3g45970	823740	ATEXLA1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE A1)	member of EXPANSIN-LIKE. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	O.I.	C.G.	H.G.
13.3	99.4	297.2	At4g08950	826473	EXO (EXORDIUM)	F:molecular_function unknown;P:response to brassinosteroid stimulus;C:cell wall, plant-type cell wall;PB	O.I.	C.G.	H.G.
13.2	99.4	31.9	At4g16563	827356	aspartyl protease family protein	F:aspartic-type endopeptidase activity;P:proteolysis;C:plant-type cell wall;PMFO	O.I.	C.G.	H.G.
12.8	99.3	255.5	At3g47340	823888	ASN1 (GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1)	encodes a glutamine-dependent asparagine synthetase, the predicted ASN1 peptide contains a purF-type glutamine-binding domain, and is expressed predominantly in shoot tissues, where light has a negative effect on its mRNA accumulation. Expression is induced within 3 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell.	O.I.	C.G.	H.G.
12.5	99.3	30.6	At1g70090	843345	LGT8 (GLUCOSYL TRANSFERASE FAMILY 8)	Encodes a protein with putative galacturonosyltransferase activity.	O.I.	C.G.	H.G.
12.2	99.3	99.7	At4g19420	827683	pectinacetylesterase family protein	F:carboxylesterase activity;P:biological_process unknown;C:endomembrane system;PMOBA	O.I.	C.G.	H.G.
12.2	99.3	61.3	At1g72900	843621	disease resistance protein (TIR-NBS class), putative	F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PBMO	O.I.	C.G.	H.G.
12.1	99.3	32.8	At5g25240	832595	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
12.0	99.3	55.8	At1g77210	844057	sugar transporter, putative	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:plasma membrane, membrane;BFMPOA	O.I.	C.G.	H.G.
11.7	99.3	201.0	At3g48360	823994	BT2 (BTB AND TAZ DOMAIN PROTEIN 2)	encodes a protein (BT2) that is an essential component of the TAC1-mediated telomerase activation pathway. Acts redundantly with BT3 and BT1 during female gametophyte development and with BT3 during male gametophyte development.	O.I.	C.G.	H.G.
11.4	99.3	267.5	At2g15960	816091	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
11.4	99.3	65.8	At2g01180	814646	ATPAP1 (PHOSPHATIDIC ACID PHOSPHATASE 1)	Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.	O.I.	C.G.	H.G.
11.3	99.3	98.0	At3g19680	821505	unknown protein	F:unknown;P:unknown;C:plasma membrane;OPMBF	O.I.	C.G.	H.G.
11.3	99.3	73.5	At5g37770	833755	TCH2 (TOUCH 2)	Encodes a protein with 40% similarity to calmodulin. Binds Ca(2+) and, as a consequence, undergoes conformational changes. CML24 expression occurs in all major organs, and transcript levels are increased from 2- to 15-fold in plants subjected to touch, darkness, heat, cold, hydrogen peroxide, abscisic acid (ABA), and indole-3-acetic acid. However, CML24 protein accumulation changes were not detectable. The putative CML24 regulatory region confers reporter expression at sites of predicted mechanical stress; in regions undergoing growth; in vascular tissues and various floral organs; and in stomata, trichomes, and hydathodes. CML24-underexpressing transgenics are resistant to ABA inhibition of germination and seedling growth, are defective in long-day induction of flowering, and have enhanced tolerance to CoCl(2), molybdic acid, ZnSO(4), and MgCl(2).	O.I.	C.G.	H.G.
11.3	99.3	46.1	At1g18570	838438	MYB51 (MYB DOMAIN PROTEIN 51)	Encodes a member of the R2R3-MYB transcription family. Involved in indole glucosinolate biosynthesis.	O.I.	C.G.	H.G.
11.3	99.3	18.9	At2g07777	2745461	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
11.2	99.2	57.9	At2g41640	818762	transferase, transferring glycosyl groups	F:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:unknown;PMOBF	O.I.	C.G.	H.G.
10.8	99.2	50.2	At3g49790	824141	ATP binding	F:ATP binding;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
10.8	99.2	44.3	At1g54740	841915	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;OPMBF	O.I.	C.G.	H.G.
10.6	99.2	42.3	At1g61100	842403	disease resistance protein (TIR class), putative	F:unknown;P:defense response;C:cellular_component unknown;MOFPBVA	O.I.	C.G.	H.G.
10.5	99.2	68.5	At2g27500	817295	glycosyl hydrolase family 17 protein	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to plasma membrane, nucleus, cytoplasm;PFO	O.I.	C.G.	H.G.
10.4	99.2	23.8	At3g02140	821182	TMAC2 (TWO OR MORE ABRES-CONTAINING GENE 2)	Encodes a protein that acts in the nucleus and is an important negative regulator of ABA and salt stress responses, and could play a critical role in controlling root elongation, floral initiation and starch degradation.	O.I.	C.G.	H.G.
10.3	99.2	44.7	At5g24160	832482	SQE6 (SQUALENE MONOXYGENASE 6)	F:squalene monooxygenase activity, oxidoreductase activity, FAD binding;P:sterol biosynthetic process;C:endomembrane system, integral to membrane;OBFMPA	O.I.	C.G.	H.G.
10.2	99.2	36.6	At3g44630	823589	disease resistance protein RPP1-WsB-like (TIR-NBS-LRR class), putative	F:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:N-terminal protein myristoylation, defense response;C:intrinsic to membrane;PMBOFAV	O.I.	C.G.	H.G.
10.1	99.2	50.9	At5g54380	835526	THE1 (THESEUS1)	F:protein kinase activity, kinase activity;P:protein amino acid autophosphorylation;C:plasma membrane;MPOBFVA	O.I.	C.G.	H.G.
10.0	99.2	172.3	At2g39570	818542	ACT domain-containing protein	F:amino acid binding;P:metabolic process;C:unknown;POB	O.I.	C.G.	H.G.
9.9	99.1	195.5	At3g57450	824912	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
9.9	99.1	160.8	At5g67300	836865	MYBR1 (MYB DOMAIN PROTEIN R1)	Member of the R2R3 factor MYB gene family involved in mediating plant responses to a variety of abiotic stimiuli.	O.I.	C.G.	H.G.
9.8	99.1	65.0	At3g57530	824920	CPK32 (CALCIUM-DEPENDENT PROTEIN KINASE 32)	Calcium-dependent Protein Kinase. ABA signaling component that regulates the ABA-responsive gene expression via ABF4. AtCPK32 has autophosphorylation activity and can phosphorylate ABF4 in vitro	O.I.	C.G.	H.G.
9.7	99.1	15.4	At1g63750	842679	ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding	F:protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:defense response, apoptosis;C:unknown;PMBOFVA	O.I.	C.G.	H.G.
9.6	99.1	93.4	At1g70290	843365	ATTPS8	Encodes an enzyme putatively involved in trehalose biosynthesis. Though the protein has both trehalose-6-phosphate synthase (TPS)-like and trehalose-6-phosphate phosphatase (TPP)-like domains, neither activity has been detected in enzymatic assays nor has the protein been able to complement yeast TPS or TPP mutants.	O.I.	C.G.	H.G.
9.5	99.1	345.8	At5g57560	835860	TCH4 (Touch 4)	Encodes a cell wall-modifying enzyme, rapidly upregulated in response to environmental stimuli	O.I.	C.G.	H.G.
9.5	99.1	45.3	At1g66160	842931	U-box domain-containing protein	F:ubiquitin-protein ligase activity, binding;P:response to chitin;C:ubiquitin ligase complex;PMOFBV	O.I.	C.G.	H.G.
9.4	99.1	256.7	At1g11260	837667	STP1 (SUGAR TRANSPORTER 1)	Encodes a H+/hexose cotransporter.	O.I.	C.G.	H.G.
9.4	99.1	186.8	At1g19770	838565	ATPUP14	Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.	O.I.	C.G.	H.G.
9.2	99.1	47.2	At5g66210	836753	CPK28	member of Calcium Dependent Protein Kinase	O.I.	C.G.	H.G.
9.2	99.1	37.7	At3g06080	819781	unknown protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
9.1	99.1	198.3	At3g57520	824919	AtSIP2 (Arabidopsis thaliana seed imbibition 2)	F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:unknown;C:cellular_component unknown;PFBAO	O.I.	C.G.	H.G.
9.1	99.1	144.7	At1g55450	841992	embryo-abundant protein-related	F:methyltransferase activity;P:response to salt stress;C:unknown;BPFMOA	O.I.	C.G.	H.G.
9.1	99.1	101.6	At2g17230	816228	EXL5 (EXORDIUM LIKE 5)	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PB	O.I.	C.G.	H.G.
9.1	99.1	37.9	At4g01330	828117	ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA	O.I.	C.G.	H.G.
8.9	99.0	128.0	At1g66180	842933	aspartyl protease family protein	F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PFOM	O.I.	C.G.	H.G.
8.9	99.0	44.6	At2g25200	817058	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
8.8	99.0	94.6	At4g23180	828417	CRK10 (CYSTEINE-RICH RLK10)	Encodes a receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307)	O.I.	C.G.	H.G.
8.8	99.0	27.7	At1g61667	842463	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO	O.I.	C.G.	H.G.
8.7	99.0	61.9	At3g50060	824168	MYB77	Encodes a member of the R2R3 transcription factor gene family. Expressed in response to potassium deprivation and auxin. Involved in lateral root development. Interacts with ARF7 and regulates the expression of some auxin responsive genes.	O.I.	C.G.	H.G.

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GSM ID	GSM131490
Assay name	ATGE_100_B
GSE experiment	GSE5629: AtGenExpress: Developmental series (seedlings and whole plants)

Microarray experiments to specifically-expressed genes

GSM ID GSM131490 Assay name ATGE_100_B GSE experiment GSE5629: AtGenExpress: Developmental series (seedlings and whole plants)

GSM ID GSM131490

Assay name ATGE_100_B

GSE experiment GSE5629: AtGenExpress: Developmental series (seedlings and whole plants)