Microarray experiments to specifically-expressed genes

GSM ID GSM131473
Assay name ATGE_7_C2
GSE experiment GSE5629: AtGenExpress: Developmental series (seedlings and whole plants)

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
20.399.655.2At1g31690840056amine oxidase/ copper ion binding / quinone bindingF:quinone binding, amine oxidase activity, copper ion binding;P:cellular amine metabolic process;C:endomembrane system;FBMOPAO.I.C.G.H.G.
12.599.332.5At5g63420836461emb2746 (embryo defective 2746)F:hydrolase activity, DNA binding, catalytic activity;P:embryonic development ending in seed dormancy, metabolic process;C:chloroplast;OBMAPFVO.I.C.G.H.G.
11.999.332.3At3g04340819589emb2458 (embryo defective 2458)F:nucleoside-triphosphatase activity, ATPase activity, metalloendopeptidase activity, nucleotide binding, ATP binding;P:embryonic development ending in seed dormancy;C:chloroplast, chloroplast envelope;OBMFPAVO.I.C.G.H.G.
11.799.3115.9At5g28500832943unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;BPOO.I.C.G.H.G.
11.199.2193.7At4g29060829027emb2726 (embryo defective 2726)F:RNA binding, translation elongation factor activity;P:embryonic development ending in seed dormancy, translational elongation, response to cadmium ion;C:chloroplast stroma, chloroplast, chloroplast envelope;BOMFPAVO.I.C.G.H.G. (EMBRYO-DEFECTIVE-DEVELOPMENT 1)glycine-tRNA ligaseO.I.C.G.H.G.
10.599.239.7At5g16715831533EMB2247 (embryo defective 2247)F:valine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding;P:embryonic development ending in seed dormancy, tRNA aminoacylation for protein translation;C:chloroplast stroma, chloroplast;OBMAFPO.I.C.G.H.G.
10.399.246.5At3g52720824438ACA1 (ALPHA CARBONIC ANHYDRASE 1)F:carbonate dehydratase activity, zinc ion binding;P:one-carbon compound metabolic process;C:endomembrane system;MBPOFO.I.C.G.H.G.
9.999.132.6At3g03710821181RIF10 (resistant to inhibition with FSM 10)Mutants impaired in the expression of this gene have been selected through their resistance to fosmidomycin, a strong inhibitor of DXR, an enzyme of the methylerythritol-dependent IPP biosynthesis pathway. The pathway enzymes were upregulated in the mutant seedlings.O.I.C.G.H.G.
9.799.146.1At5g49030834962OVA2 (ovule abortion 2)F:nucleotide binding, isoleucine-tRNA ligase activity, aminoacyl-tRNA ligase activity, catalytic activity, ATP binding;P:ovule development, tRNA aminoacylation for protein translation;C:chloroplast;OBMAFPO.I.C.G.H.G.
9.499.174.2At1g01320839293tetratricopeptide repeat (TPR)-containing proteinF:binding;P:unknown;C:cellular_component unknown;MBFOPAVO.I.C.G.H.G.
9.299.1209.0At3g13470820549chaperonin, putativeF:protein binding, ATP binding;P:protein folding, cellular protein metabolic process;C:in 7 components;BOMFPAVO.I.C.G.H.G.
8.999.077.4At3g16000820845MFP1 (MAR BINDING FILAMENT-LIKE PROTEIN 1)encodes a DNA-binding protein that binds to plastid DNA non-specifically and is associated with nucleoids and thylakoid membranes. The expression of the gene is correlated with the development of thylakoid membranes.O.I.C.G.H.G.
8.999.077.1At2g47590819372PHR2 (photolyase/blue-light receptor 2)photolyase/blue light photoreceptor PHR2 (PHR2) mRNA,O.I.C.G.H.G.
8.899.014.4At2g15820816078OTP51 (ORGANELLE TRANSCRIPT PROCESSING 51)Encodes a protein that promotes splicing of type II introns. otp51 mutants fail to splice intron 2 of plastid ycf3 transcripts, a factor required for the assembly of Photosystem I. Therefore, homozygous otp51 mutants have profound photosynthetic defects and can only survive in sucrose-supplemented in vitro cultures under low light conditions. OTP51 may also be involved in splicing several other transcripts and precursor forms of the trnL, trnG, trnI, and trnA transcripts also accumulate in otp51 mutants. Although OTP51 shares some homology with DNA endonucleases, it lacks key catalytic residues suggesting that it does not participate in DNA cleavage.O.I.C.G.H.G.
8.799.027.9At5g02830831772pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:chloroplast;POMFBAO.I.C.G.H.G.
8.699.037.4At4g04350825755EMB2369 (EMBRYO DEFECTIVE 2369)F:aminoacyl-tRNA ligase activity, nucleotide binding, leucine-tRNA ligase activity, ATP binding;P:embryonic development ending in seed dormancy, tRNA aminoacylation for protein translation;C:mitochondrion, chloroplast;OBAMFPVO.I.C.G.H.G.

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