CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM131471

Assay name ATGE_7_A2

GSE experiment GSE5629: AtGenExpress: Developmental series (seedlings and whole plants)

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
92.5 99.9 40.2 At1g31680 - - O.I. C.G. H.G.
30.4 99.7 45.7 At4g34830 829635 - F:unknown;P:unknown;C:chloroplast;POMFBA O.I. C.G. H.G.
29.6 99.7 66.6 At1g31690 840056 amine oxidase/ copper ion binding / quinone binding F:quinone binding, amine oxidase activity, copper ion binding;P:cellular amine metabolic process;C:endomembrane system;FBMOPA O.I. C.G. H.G.
21.9 99.6 43.1 At5g63420 836461 emb2746 (embryo defective 2746) F:hydrolase activity, DNA binding, catalytic activity;P:embryonic development ending in seed dormancy, metabolic process;C:chloroplast;OBMAPFV O.I. C.G. H.G.
19.3 99.6 41.2 At3g04340 819589 emb2458 (embryo defective 2458) F:nucleoside-triphosphatase activity, ATPase activity, metalloendopeptidase activity, nucleotide binding, ATP binding;P:embryonic development ending in seed dormancy;C:chloroplast, chloroplast envelope;OBMFPAV O.I. C.G. H.G.
17.5 99.5 54.9 At3g48110 823966 EDD1 (EMBRYO-DEFECTIVE-DEVELOPMENT 1) glycine-tRNA ligase O.I. C.G. H.G.
15.2 99.4 132.0 At5g28500 832943 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;BPO O.I. C.G. H.G.
15.1 99.4 40.2 At3g03710 821181 RIF10 (resistant to inhibition with FSM 10) Mutants impaired in the expression of this gene have been selected through their resistance to fosmidomycin, a strong inhibitor of DXR, an enzyme of the methylerythritol-dependent IPP biosynthesis pathway. The pathway enzymes were upregulated in the mutant seedlings. O.I. C.G. H.G.
14.8 99.4 74.3 At3g59780 825147 - F:molecular_function unknown;P:biological_process unknown;C:nucleus, chloroplast;OBMFPV O.I. C.G. H.G.
14.0 99.4 55.4 At5g49030 834962 OVA2 (ovule abortion 2) F:nucleotide binding, isoleucine-tRNA ligase activity, aminoacyl-tRNA ligase activity, catalytic activity, ATP binding;P:ovule development, tRNA aminoacylation for protein translation;C:chloroplast;OBMAFP O.I. C.G. H.G.
13.9 99.4 18.1 At2g15820 816078 OTP51 (ORGANELLE TRANSCRIPT PROCESSING 51) Encodes a protein that promotes splicing of type II introns. otp51 mutants fail to splice intron 2 of plastid ycf3 transcripts, a factor required for the assembly of Photosystem I. Therefore, homozygous otp51 mutants have profound photosynthetic defects and can only survive in sucrose-supplemented in vitro cultures under low light conditions. OTP51 may also be involved in splicing several other transcripts and precursor forms of the trnL, trnG, trnI, and trnA transcripts also accumulate in otp51 mutants. Although OTP51 shares some homology with DNA endonucleases, it lacks key catalytic residues suggesting that it does not participate in DNA cleavage. O.I. C.G. H.G.
13.4 99.4 77.3 At5g55220 835615 trigger factor type chaperone family protein F:peptidyl-prolyl cis-trans isomerase activity;P:protein folding, protein transport;C:chloroplast, chloroplast stroma, chloroplast envelope;BOMPFV O.I. C.G. H.G.
13.1 99.4 88.0 At1g01320 839293 tetratricopeptide repeat (TPR)-containing protein F:binding;P:unknown;C:cellular_component unknown;MBFOPAV O.I. C.G. H.G.
12.1 99.3 60.1 At3g18390 821368 EMB1865 (embryo defective 1865) F:RNA binding;P:embryonic development ending in seed dormancy;C:chloroplast;OPMFVBA O.I. C.G. H.G.
11.9 99.3 158.5 At4g28080 828923 binding F:binding;P:unknown;C:unknown;MBFOPAV O.I. C.G. H.G.
11.6 99.3 42.0 At1g65060 842814 4CL3 encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. mRNA levels are not induced in response to wounding or to fungal infection by P. parasitica. mRNA is expressed in flowers, to a lesser degree in mature leaves and siliques and marginally in seedling roots and bolting stems of mature plants. The catalytic efficiency was in the following (descending) order: p-coumaric acid, caffeic acid, ferulic acid, cinnamic acid and 5-OH-ferulic acid. At4CL3 was unable to use sinapic acid as substrate. O.I. C.G. H.G.
11.5 99.3 7.8 At4g00640 - - O.I. C.G. H.G.
11.3 99.3 54.0 At5g53170 835398 FTSH11 (FtsH protease 11) encodes an FtsH protease that is localized to the chloroplast and the mitochondrion O.I. C.G. H.G.
11.1 99.2 31.5 At5g02830 831772 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:chloroplast;POMFBA O.I. C.G. H.G.
11.0 99.2 30.7 At4g23940 828494 FtsH protease, putative F:in 7 functions;P:proteolysis;C:chloroplast;OBMFPAV O.I. C.G. H.G.
11.0 99.2 24.1 At5g64580 836579 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, metalloendopeptidase activity, nucleotide binding, zinc ion binding, ATP binding;P:unknown;C:chloroplast, chloroplast envelope;BOMFPAV O.I. C.G. H.G.
10.8 99.2 37.6 At3g16290 820876 EMB2083 (embryo defective 2083) F:in 8 functions;P:embryonic development ending in seed dormancy;C:chloroplast, chloroplast envelope;OBMFPAV O.I. C.G. H.G.
10.6 99.2 117.2 At1g12800 837836 S1 RNA-binding domain-containing protein F:RNA binding;P:unknown;C:chloroplast;BOMFPAV O.I. C.G. H.G.
10.6 99.2 47.2 At1g56050 842056 GTP-binding protein-related F:GTP binding;P:biological_process unknown;C:chloroplast, chloroplast stroma;OBMFAP O.I. C.G. H.G.
10.6 99.2 39.8 At5g16715 831533 EMB2247 (embryo defective 2247) F:valine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding;P:embryonic development ending in seed dormancy, tRNA aminoacylation for protein translation;C:chloroplast stroma, chloroplast;OBMAFP O.I. C.G. H.G.
10.5 99.2 26.9 At1g03160 839566 FZL (FZO-LIKE) A new plant-specific member of the dynamin superfamily; defines a new protein class within the dynamin superfamily of membrane remodeling GTPases that regulates organization of the thylakoid network in plants. Targeted to chloroplasts and associated with thylakoid and envelope membranes as punctate structures. Knockout mutants have abnormalities in chloroplast and thylakoid morphology, including disorganized grana stacks and alterations in the relative proportions of grana and stroma thylakoids. Overexpression of FZL-GFP also conferred defects in thylakoid organization. O.I. C.G. H.G.
10.4 99.2 221.6 At3g13470 820549 chaperonin, putative F:protein binding, ATP binding;P:protein folding, cellular protein metabolic process;C:in 7 components;BOMFPAV O.I. C.G. H.G.
10.4 99.2 24.4 At3g03770 821164 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
10.3 99.2 186.8 At4g29060 829027 emb2726 (embryo defective 2726) F:RNA binding, translation elongation factor activity;P:embryonic development ending in seed dormancy, translational elongation, response to cadmium ion;C:chloroplast stroma, chloroplast, chloroplast envelope;BOMFPAV O.I. C.G. H.G.
10.3 99.2 46.6 At3g52720 824438 ACA1 (ALPHA CARBONIC ANHYDRASE 1) F:carbonate dehydratase activity, zinc ion binding;P:one-carbon compound metabolic process;C:endomembrane system;MBPOF O.I. C.G. H.G.
10.3 99.2 24.9 At2g18940 816411 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:chloroplast;POMFBA O.I. C.G. H.G.
10.1 99.2 82.5 At3g16000 820845 MFP1 (MAR BINDING FILAMENT-LIKE PROTEIN 1) encodes a DNA-binding protein that binds to plastid DNA non-specifically and is associated with nucleoids and thylakoid membranes. The expression of the gene is correlated with the development of thylakoid membranes. O.I. C.G. H.G.
10.0 99.2 67.2 At2g21860 816722 violaxanthin de-epoxidase-related F:molecular_function unknown;P:biological_process unknown;C:unknown;PO O.I. C.G. H.G.
9.9 99.1 51.9 At1g08540 837376 SIG2 (RNA POLYMERASE SIGMA SUBUNIT 2) Enodes a subunit of chloroplast RNA polymerase, confers the ability to recognize promoter sequences on the core enzyme. SIG1 is induced by red and blue light. O.I. C.G. H.G.
9.9 99.1 31.8 At5g01590 830369 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast, chloroplast envelope;BPO O.I. C.G. H.G.
9.9 99.1 10.6 At2g31150 817671 ATP binding / ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism F:ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism, ATP binding;P:ATP biosynthetic process;C:membrane;OMBFPVA O.I. C.G. H.G.
9.8 99.1 19.2 At2g32640 817824 unknown protein F:unknown;P:unknown;C:chloroplast;BPO O.I. C.G. H.G.
9.7 99.1 25.1 At2g39190 818504 ATATH8 member of ATH subfamily O.I. C.G. H.G.
9.5 99.1 79.7 At2g47590 819372 PHR2 (photolyase/blue-light receptor 2) photolyase/blue light photoreceptor PHR2 (PHR2) mRNA, O.I. C.G. H.G.
9.5 99.1 22.0 At2g20020 816521 CAF1 Promotes the splicing of chloroplast group II introns. Splices clpP-1 and ropC1 introns. O.I. C.G. H.G.
9.4 99.1 68.7 At5g51820 835257 PGM (PHOSPHOGLUCOMUTASE) Encodes a plastid isoform of the enzyme phosphoglucomutase involved in controlling photosynthetic carbon flow. Effective petiole movement against the direction of the gravity requires functional PGM activity that is required for full development of amyloplasts. O.I. C.G. H.G.
9.3 99.1 22.9 At3g23070 821881 RNA binding F:RNA binding;P:unknown;C:chloroplast;PMOFBAV O.I. C.G. H.G.
9.2 99.1 46.3 At1g79560 844294 FTSH12 (FTSH PROTEASE 12) encodes an FtsH protease that is localized to the chloroplast O.I. C.G. H.G.
9.1 99.1 79.8 At5g18660 831984 PCB2 (PALE-GREEN AND CHLOROPHYLL B REDUCED 2) Encodes a protein with 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity. Mutants accumulate divinyl chlorophyll rather than monovinyl chlorophyll. O.I. C.G. H.G.
9.1 99.1 23.6 At3g29230 822578 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFB O.I. C.G. H.G.
9.0 99.1 19.8 At3g15030 820732 TCP4 (TCP family transcription factor 4) Arabidopsis thaliana TCP family transcription factor. Regulated by miR319. Involved in heterchronic regulation of leaf differentiation. O.I. C.G. H.G.
8.9 99.0 77.7 At1g31800 840067 CYP97A3 (CYTOCHROME P450-TYPE MONOOXYGENASE 97A3) Encodes a protein with β-ring carotenoid hydroxylase activity. O.I. C.G. H.G.
8.9 99.0 40.2 At3g59040 825073 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POMFBA O.I. C.G. H.G.
8.9 99.0 35.0 At4g12830 826895 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:chloroplast;BOMPFA O.I. C.G. H.G.
8.9 99.0 21.2 At1g70070 843343 EMB25 (EMBRYO DEFECTIVE 25) Allelic to ISE2(increased size exclusion limit of plasmodesmata 2). Mutants maintain dilated plasmodesmata at the embryonic torpedo stage. O.I. C.G. H.G.
8.8 99.0 17.8 At1g49630 841387 ATPREP2 (ARABIDOPSIS THALIANA PRESEQUENCE PROTEASE 2) Zinc metalloprotease pitrilysin subfamily A. Signal peptide degrading enzyme targeted to mitochondria and chloroplasts. Expressed in flower, leaf and root. Not expressed in silique and shoot. O.I. C.G. H.G.
8.7 99.0 37.7 At4g04350 825755 EMB2369 (EMBRYO DEFECTIVE 2369) F:aminoacyl-tRNA ligase activity, nucleotide binding, leucine-tRNA ligase activity, ATP binding;P:embryonic development ending in seed dormancy, tRNA aminoacylation for protein translation;C:mitochondrion, chloroplast;OBAMFPV O.I. C.G. H.G.
8.7 99.0 29.6 At3g45450 823685 Clp amino terminal domain-containing protein F:protein binding, ATP binding;P:protein metabolic process;C:unknown;BOPFAMV O.I. C.G. H.G.
8.7 99.0 28.4 At4g18810 827615 binding / catalytic/ transcription repressor F:transcription repressor activity, binding, catalytic activity;P:regulation of nitrogen utilization, metabolic process;C:chloroplast, vacuole;BOPFAM O.I. C.G. H.G.
8.6 99.0 47.1 At2g32690 3768391 GRP23 (GLYCINE-RICH PROTEIN 23) Glycine-rich protein similar in structure to GRP5. The expression of GRP23 is induced by HPA (cutin monomer, salicylic acid, and abscisic acid. O.I. C.G. H.G.
8.6 99.0 13.6 At1g53800 841817 endonuclease F:endonuclease activity;P:biological_process unknown;C:cellular_component unknown;OMBFPV O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
92.5	99.9	40.2	At1g31680		-	-	O.I.	C.G.	H.G.
30.4	99.7	45.7	At4g34830	829635	-	F:unknown;P:unknown;C:chloroplast;POMFBA	O.I.	C.G.	H.G.
29.6	99.7	66.6	At1g31690	840056	amine oxidase/ copper ion binding / quinone binding	F:quinone binding, amine oxidase activity, copper ion binding;P:cellular amine metabolic process;C:endomembrane system;FBMOPA	O.I.	C.G.	H.G.
21.9	99.6	43.1	At5g63420	836461	emb2746 (embryo defective 2746)	F:hydrolase activity, DNA binding, catalytic activity;P:embryonic development ending in seed dormancy, metabolic process;C:chloroplast;OBMAPFV	O.I.	C.G.	H.G.
19.3	99.6	41.2	At3g04340	819589	emb2458 (embryo defective 2458)	F:nucleoside-triphosphatase activity, ATPase activity, metalloendopeptidase activity, nucleotide binding, ATP binding;P:embryonic development ending in seed dormancy;C:chloroplast, chloroplast envelope;OBMFPAV	O.I.	C.G.	H.G.
17.5	99.5	54.9	At3g48110	823966	EDD1 (EMBRYO-DEFECTIVE-DEVELOPMENT 1)	glycine-tRNA ligase	O.I.	C.G.	H.G.
15.2	99.4	132.0	At5g28500	832943	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;BPO	O.I.	C.G.	H.G.
15.1	99.4	40.2	At3g03710	821181	RIF10 (resistant to inhibition with FSM 10)	Mutants impaired in the expression of this gene have been selected through their resistance to fosmidomycin, a strong inhibitor of DXR, an enzyme of the methylerythritol-dependent IPP biosynthesis pathway. The pathway enzymes were upregulated in the mutant seedlings.	O.I.	C.G.	H.G.
14.8	99.4	74.3	At3g59780	825147	-	F:molecular_function unknown;P:biological_process unknown;C:nucleus, chloroplast;OBMFPV	O.I.	C.G.	H.G.
14.0	99.4	55.4	At5g49030	834962	OVA2 (ovule abortion 2)	F:nucleotide binding, isoleucine-tRNA ligase activity, aminoacyl-tRNA ligase activity, catalytic activity, ATP binding;P:ovule development, tRNA aminoacylation for protein translation;C:chloroplast;OBMAFP	O.I.	C.G.	H.G.
13.9	99.4	18.1	At2g15820	816078	OTP51 (ORGANELLE TRANSCRIPT PROCESSING 51)	Encodes a protein that promotes splicing of type II introns. otp51 mutants fail to splice intron 2 of plastid ycf3 transcripts, a factor required for the assembly of Photosystem I. Therefore, homozygous otp51 mutants have profound photosynthetic defects and can only survive in sucrose-supplemented in vitro cultures under low light conditions. OTP51 may also be involved in splicing several other transcripts and precursor forms of the trnL, trnG, trnI, and trnA transcripts also accumulate in otp51 mutants. Although OTP51 shares some homology with DNA endonucleases, it lacks key catalytic residues suggesting that it does not participate in DNA cleavage.	O.I.	C.G.	H.G.
13.4	99.4	77.3	At5g55220	835615	trigger factor type chaperone family protein	F:peptidyl-prolyl cis-trans isomerase activity;P:protein folding, protein transport;C:chloroplast, chloroplast stroma, chloroplast envelope;BOMPFV	O.I.	C.G.	H.G.
13.1	99.4	88.0	At1g01320	839293	tetratricopeptide repeat (TPR)-containing protein	F:binding;P:unknown;C:cellular_component unknown;MBFOPAV	O.I.	C.G.	H.G.
12.1	99.3	60.1	At3g18390	821368	EMB1865 (embryo defective 1865)	F:RNA binding;P:embryonic development ending in seed dormancy;C:chloroplast;OPMFVBA	O.I.	C.G.	H.G.
11.9	99.3	158.5	At4g28080	828923	binding	F:binding;P:unknown;C:unknown;MBFOPAV	O.I.	C.G.	H.G.
11.6	99.3	42.0	At1g65060	842814	4CL3	encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. mRNA levels are not induced in response to wounding or to fungal infection by P. parasitica. mRNA is expressed in flowers, to a lesser degree in mature leaves and siliques and marginally in seedling roots and bolting stems of mature plants. The catalytic efficiency was in the following (descending) order: p-coumaric acid, caffeic acid, ferulic acid, cinnamic acid and 5-OH-ferulic acid. At4CL3 was unable to use sinapic acid as substrate.	O.I.	C.G.	H.G.
11.5	99.3	7.8	At4g00640		-	-	O.I.	C.G.	H.G.
11.3	99.3	54.0	At5g53170	835398	FTSH11 (FtsH protease 11)	encodes an FtsH protease that is localized to the chloroplast and the mitochondrion	O.I.	C.G.	H.G.
11.1	99.2	31.5	At5g02830	831772	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:biological_process unknown;C:chloroplast;POMFBA	O.I.	C.G.	H.G.
11.0	99.2	30.7	At4g23940	828494	FtsH protease, putative	F:in 7 functions;P:proteolysis;C:chloroplast;OBMFPAV	O.I.	C.G.	H.G.
11.0	99.2	24.1	At5g64580	836579	AAA-type ATPase family protein	F:nucleoside-triphosphatase activity, metalloendopeptidase activity, nucleotide binding, zinc ion binding, ATP binding;P:unknown;C:chloroplast, chloroplast envelope;BOMFPAV	O.I.	C.G.	H.G.
10.8	99.2	37.6	At3g16290	820876	EMB2083 (embryo defective 2083)	F:in 8 functions;P:embryonic development ending in seed dormancy;C:chloroplast, chloroplast envelope;OBMFPAV	O.I.	C.G.	H.G.
10.6	99.2	117.2	At1g12800	837836	S1 RNA-binding domain-containing protein	F:RNA binding;P:unknown;C:chloroplast;BOMFPAV	O.I.	C.G.	H.G.
10.6	99.2	47.2	At1g56050	842056	GTP-binding protein-related	F:GTP binding;P:biological_process unknown;C:chloroplast, chloroplast stroma;OBMFAP	O.I.	C.G.	H.G.
10.6	99.2	39.8	At5g16715	831533	EMB2247 (embryo defective 2247)	F:valine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding;P:embryonic development ending in seed dormancy, tRNA aminoacylation for protein translation;C:chloroplast stroma, chloroplast;OBMAFP	O.I.	C.G.	H.G.
10.5	99.2	26.9	At1g03160	839566	FZL (FZO-LIKE)	A new plant-specific member of the dynamin superfamily; defines a new protein class within the dynamin superfamily of membrane remodeling GTPases that regulates organization of the thylakoid network in plants. Targeted to chloroplasts and associated with thylakoid and envelope membranes as punctate structures. Knockout mutants have abnormalities in chloroplast and thylakoid morphology, including disorganized grana stacks and alterations in the relative proportions of grana and stroma thylakoids. Overexpression of FZL-GFP also conferred defects in thylakoid organization.	O.I.	C.G.	H.G.
10.4	99.2	221.6	At3g13470	820549	chaperonin, putative	F:protein binding, ATP binding;P:protein folding, cellular protein metabolic process;C:in 7 components;BOMFPAV	O.I.	C.G.	H.G.
10.4	99.2	24.4	At3g03770	821164	leucine-rich repeat transmembrane protein kinase, putative	F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
10.3	99.2	186.8	At4g29060	829027	emb2726 (embryo defective 2726)	F:RNA binding, translation elongation factor activity;P:embryonic development ending in seed dormancy, translational elongation, response to cadmium ion;C:chloroplast stroma, chloroplast, chloroplast envelope;BOMFPAV	O.I.	C.G.	H.G.
10.3	99.2	46.6	At3g52720	824438	ACA1 (ALPHA CARBONIC ANHYDRASE 1)	F:carbonate dehydratase activity, zinc ion binding;P:one-carbon compound metabolic process;C:endomembrane system;MBPOF	O.I.	C.G.	H.G.
10.3	99.2	24.9	At2g18940	816411	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:biological_process unknown;C:chloroplast;POMFBA	O.I.	C.G.	H.G.
10.1	99.2	82.5	At3g16000	820845	MFP1 (MAR BINDING FILAMENT-LIKE PROTEIN 1)	encodes a DNA-binding protein that binds to plastid DNA non-specifically and is associated with nucleoids and thylakoid membranes. The expression of the gene is correlated with the development of thylakoid membranes.	O.I.	C.G.	H.G.
10.0	99.2	67.2	At2g21860	816722	violaxanthin de-epoxidase-related	F:molecular_function unknown;P:biological_process unknown;C:unknown;PO	O.I.	C.G.	H.G.
9.9	99.1	51.9	At1g08540	837376	SIG2 (RNA POLYMERASE SIGMA SUBUNIT 2)	Enodes a subunit of chloroplast RNA polymerase, confers the ability to recognize promoter sequences on the core enzyme. SIG1 is induced by red and blue light.	O.I.	C.G.	H.G.
9.9	99.1	31.8	At5g01590	830369	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast, chloroplast envelope;BPO	O.I.	C.G.	H.G.
9.9	99.1	10.6	At2g31150	817671	ATP binding / ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism	F:ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism, ATP binding;P:ATP biosynthetic process;C:membrane;OMBFPVA	O.I.	C.G.	H.G.
9.8	99.1	19.2	At2g32640	817824	unknown protein	F:unknown;P:unknown;C:chloroplast;BPO	O.I.	C.G.	H.G.
9.7	99.1	25.1	At2g39190	818504	ATATH8	member of ATH subfamily	O.I.	C.G.	H.G.
9.5	99.1	79.7	At2g47590	819372	PHR2 (photolyase/blue-light receptor 2)	photolyase/blue light photoreceptor PHR2 (PHR2) mRNA,	O.I.	C.G.	H.G.
9.5	99.1	22.0	At2g20020	816521	CAF1	Promotes the splicing of chloroplast group II introns. Splices clpP-1 and ropC1 introns.	O.I.	C.G.	H.G.
9.4	99.1	68.7	At5g51820	835257	PGM (PHOSPHOGLUCOMUTASE)	Encodes a plastid isoform of the enzyme phosphoglucomutase involved in controlling photosynthetic carbon flow. Effective petiole movement against the direction of the gravity requires functional PGM activity that is required for full development of amyloplasts.	O.I.	C.G.	H.G.
9.3	99.1	22.9	At3g23070	821881	RNA binding	F:RNA binding;P:unknown;C:chloroplast;PMOFBAV	O.I.	C.G.	H.G.
9.2	99.1	46.3	At1g79560	844294	FTSH12 (FTSH PROTEASE 12)	encodes an FtsH protease that is localized to the chloroplast	O.I.	C.G.	H.G.
9.1	99.1	79.8	At5g18660	831984	PCB2 (PALE-GREEN AND CHLOROPHYLL B REDUCED 2)	Encodes a protein with 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity. Mutants accumulate divinyl chlorophyll rather than monovinyl chlorophyll.	O.I.	C.G.	H.G.
9.1	99.1	23.6	At3g29230	822578	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFB	O.I.	C.G.	H.G.
9.0	99.1	19.8	At3g15030	820732	TCP4 (TCP family transcription factor 4)	Arabidopsis thaliana TCP family transcription factor. Regulated by miR319. Involved in heterchronic regulation of leaf differentiation.	O.I.	C.G.	H.G.
8.9	99.0	77.7	At1g31800	840067	CYP97A3 (CYTOCHROME P450-TYPE MONOOXYGENASE 97A3)	Encodes a protein with β-ring carotenoid hydroxylase activity.	O.I.	C.G.	H.G.
8.9	99.0	40.2	At3g59040	825073	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POMFBA	O.I.	C.G.	H.G.
8.9	99.0	35.0	At4g12830	826895	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:unknown;C:chloroplast;BOMPFA	O.I.	C.G.	H.G.
8.9	99.0	21.2	At1g70070	843343	EMB25 (EMBRYO DEFECTIVE 25)	Allelic to ISE2(increased size exclusion limit of plasmodesmata 2). Mutants maintain dilated plasmodesmata at the embryonic torpedo stage.	O.I.	C.G.	H.G.
8.8	99.0	17.8	At1g49630	841387	ATPREP2 (ARABIDOPSIS THALIANA PRESEQUENCE PROTEASE 2)	Zinc metalloprotease pitrilysin subfamily A. Signal peptide degrading enzyme targeted to mitochondria and chloroplasts. Expressed in flower, leaf and root. Not expressed in silique and shoot.	O.I.	C.G.	H.G.
8.7	99.0	37.7	At4g04350	825755	EMB2369 (EMBRYO DEFECTIVE 2369)	F:aminoacyl-tRNA ligase activity, nucleotide binding, leucine-tRNA ligase activity, ATP binding;P:embryonic development ending in seed dormancy, tRNA aminoacylation for protein translation;C:mitochondrion, chloroplast;OBAMFPV	O.I.	C.G.	H.G.
8.7	99.0	29.6	At3g45450	823685	Clp amino terminal domain-containing protein	F:protein binding, ATP binding;P:protein metabolic process;C:unknown;BOPFAMV	O.I.	C.G.	H.G.
8.7	99.0	28.4	At4g18810	827615	binding / catalytic/ transcription repressor	F:transcription repressor activity, binding, catalytic activity;P:regulation of nitrogen utilization, metabolic process;C:chloroplast, vacuole;BOPFAM	O.I.	C.G.	H.G.
8.6	99.0	47.1	At2g32690	3768391	GRP23 (GLYCINE-RICH PROTEIN 23)	Glycine-rich protein similar in structure to GRP5. The expression of GRP23 is induced by HPA (cutin monomer, salicylic acid, and abscisic acid.	O.I.	C.G.	H.G.
8.6	99.0	13.6	At1g53800	841817	endonuclease	F:endonuclease activity;P:biological_process unknown;C:cellular_component unknown;OMBFPV	O.I.	C.G.	H.G.

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GSM ID	GSM131471
Assay name	ATGE_7_A2
GSE experiment	GSE5629: AtGenExpress: Developmental series (seedlings and whole plants)

Microarray experiments to specifically-expressed genes

GSM ID GSM131471 Assay name ATGE_7_A2 GSE experiment GSE5629: AtGenExpress: Developmental series (seedlings and whole plants)

GSM ID GSM131471

Assay name ATGE_7_A2

GSE experiment GSE5629: AtGenExpress: Developmental series (seedlings and whole plants)