CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM131463

Assay name AtGen_6-9511_Heatstress(3h)+9hrecovery-Shoots-12.0h_Rep1

GSE experiment GSE5628: AtGenExpress: Stress Treatments (Heat stress)

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
79.3 99.9 259.7 At5g59720 836093 HSP18.2 (heat shock protein 18.2) encodes a low molecular weight heat shock protein that contains the heat shock element in the promoter region. Expression is induced in response to heat shock. O.I. C.G. H.G.
36.3 99.7 56.9 At5g02830 831772 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:chloroplast;POMFBA O.I. C.G. H.G.
31.4 99.7 18.7 At2g32290 817789 BAM6 (BETA-AMYLASE 6) F:cation binding, beta-amylase activity, catalytic activity;P:cellulose biosynthetic process, carbohydrate metabolic process, polysaccharide catabolic process;C:chloroplast;PBO O.I. C.G. H.G.
30.7 99.7 64.9 At4g12830 826895 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:chloroplast;BOMPFA O.I. C.G. H.G.
24.8 99.6 120.9 At4g10120 826603 ATSPS4F Encodes a protein with putative sucrose-phosphate synthase activity. O.I. C.G. H.G.
22.0 99.6 53.3 At5g13730 831218 SIG4 (SIGMA FACTOR 4) Encodes sigma 4 factor, involved in regulating the activity of the plastid-encoded RNA polymerase PEP. Regulates the overall quantity of NDH complexes and thus influences NDH activity. O.I. C.G. H.G.
20.5 99.6 99.0 At3g55630 824729 ATDFD (A. THALIANA DHFS-FPGS HOMOLOG D) F:tetrahydrofolylpolyglutamate synthase activity;P:one-carbon compound metabolic process;C:cytosol;BOFMPA O.I. C.G. H.G.
20.4 99.6 41.1 At5g58310 835943 MES18 (METHYL ESTERASE 18) Encodes a protein shown to have methyl IAA esterase activity in vitro. This protein does not act on methyl JA, MeSA, MeGA4, or MEGA9 in vitro. O.I. C.G. H.G.
18.3 99.5 113.7 At3g28270 822453 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMPOAFV O.I. C.G. H.G.
17.3 99.5 8.3 At3g10150 820178 PAP16 (PURPLE ACID PHOSPHATASE 16) F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:biological_process unknown;C:membrane;FBPO O.I. C.G. H.G.
17.0 99.5 13.1 At3g16360 820883 AHP4 (HPT PHOSPHOTRANSMITTER 4) Encodes AHP4, a histidine-containing phosphotransmitter involved in Histidine (His)-to-Aspartate (Asp) phosphorelay signal transduction. AHP4 is one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs). AHPs function as redundant positive regulators of cytokinin signaling. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6). O.I. C.G. H.G.
16.1 99.5 15.5 At5g44410 834467 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAM O.I. C.G. H.G.
15.2 99.4 24.5 At1g69523 843286 UbiE/COQ5 methyltransferase family protein F:methyltransferase activity;P:metabolic process;C:chloroplast;BOFAMP O.I. C.G. H.G.
14.7 99.4 105.0 At5g17310 831596 UTP--glucose-1-phosphate uridylyltransferase, putative / UDP-glucose pyrophosphorylase, putative / UGPase, putative F:UTP:glucose-1-phosphate uridylyltransferase activity, nucleotidyltransferase activity;P:response to cadmium ion, response to salt stress, metabolic process;C:plasma membrane;MBFPO O.I. C.G. H.G.
14.4 99.4 32.2 At4g09350 826517 DNAJ heat shock N-terminal domain-containing protein F:heat shock protein binding;P:protein folding;C:chloroplast;BOMFPAV O.I. C.G. H.G.
14.3 99.4 130.9 At5g63780 836498 SHA1 (shoot apical meristem arrest 1) Encodes SHA1 (shoot apical meristem arrest), a putative E3 ligase (a RING finger protein) required for post-embryonic SAM maintenance. The mutant sha1-1 shows a primary SAM-deficient phenotype at the adult stage. O.I. C.G. H.G.
14.2 99.4 67.7 At3g48200 823977 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BOP O.I. C.G. H.G.
13.9 99.4 89.6 At1g74880 843827 NDH-O (NAD(P)H:plastoquinone dehydrogenase complex subunit O) Encodes subunit NDH-O of NAD(P)H:plastoquinone dehydrogenase complex (Ndh complex) present in the thylakoid membrane of chloroplasts. This subunit is thought to be required for Ndh complex assembly. O.I. C.G. H.G.
13.5 99.4 112.0 At3g16250 820871 NDF4 (NDH-DEPENDENT CYCLIC ELECTRON FLOW 1) encodes a novel subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in cyclic electron flow around photosystem I to produce ATP. Contains a 4Fe-4S cluster. O.I. C.G. H.G.
13.5 99.4 89.5 At1g07440 837256 tropinone reductase, putative / tropine dehydrogenase, putative F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV O.I. C.G. H.G.
13.4 99.4 28.1 At5g59670 836088 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
12.9 99.3 32.7 At5g62140 836334 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBO O.I. C.G. H.G.
12.7 99.3 57.7 At3g01440 821143 oxygen evolving enhancer 3 (PsbQ) family protein F:calcium ion binding;P:photosynthesis, light reaction;C:chloroplast thylakoid membrane, chloroplast photosystem II, chloroplast thylakoid lumen, chloroplast, oxygen evolving complex;P O.I. C.G. H.G.
12.5 99.3 118.2 At5g58260 835938 - Encodes subunit NDH-N of NAD(P)H:plastoquinone dehydrogenase complex (Ndh complex) present in the thylakoid membrane of chloroplasts. This subunit is thought to be required for Ndh complex assembly. O.I. C.G. H.G.
12.1 99.3 79.7 At4g12310 826840 CYP706A5 member of CYP706A O.I. C.G. H.G.
12.1 99.3 40.4 At1g26230 839164 chaperonin, putative F:protein binding, ATP binding;P:cellular protein metabolic process;C:chloroplast;BOMFPAV O.I. C.G. H.G.
12.1 99.3 11.7 At5g66520 836784 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:cellular_component unknown;POMFBA O.I. C.G. H.G.
11.8 99.3 55.5 At4g18240 827550 ATSS4 F:transferase activity, transferring glycosyl groups;P:starch metabolic process;C:chloroplast;MOBPFAV O.I. C.G. H.G.
11.8 99.3 44.0 At1g22630 838869 unknown protein F:unknown;P:unknown;C:chloroplast;MPBO O.I. C.G. H.G.
11.6 99.3 33.5 At3g01660 821098 methyltransferase F:methyltransferase activity;P:metabolic process;C:cellular_component unknown;BOPMAF O.I. C.G. H.G.
11.6 99.3 20.0 At3g22150 821779 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:unknown;C:chloroplast;POMFBA O.I. C.G. H.G.
11.5 99.3 12.2 At4g19510 827692 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMOBFA O.I. C.G. H.G.
11.4 99.3 61.5 At5g37670 833746 15.7 kDa class I-related small heat shock protein-like (HSP15.7-CI) F:molecular_function unknown;P:response to heat;C:unknown;BPOFAM O.I. C.G. H.G.
11.4 99.3 47.0 At4g33500 829488 protein phosphatase 2C-related / PP2C-related F:protein serine/threonine phosphatase activity, catalytic activity;P:unknown;C:chloroplast;MOBFPAV O.I. C.G. H.G.
11.3 99.3 36.7 At3g10840 820253 hydrolase, alpha/beta fold family protein F:hydrolase activity, catalytic activity;P:unknown;C:chloroplast envelope;BOMPFAV O.I. C.G. H.G.
11.0 99.2 24.9 At1g74070 843747 peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein F:peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:chloroplast thylakoid lumen, chloroplast;MPFOB O.I. C.G. H.G.
10.8 99.2 87.9 At1g01790 837332 KEA1 (K EFFLUX ANTIPORTER 1) K efflux antiporter KEA1 O.I. C.G. H.G.
10.7 99.2 52.1 At5g58770 835991 dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putative F:dehydrodolichyl diphosphate synthase activity;P:dolichol biosynthetic process;C:chloroplast;OBAFMP O.I. C.G. H.G.
10.7 99.2 40.5 At1g60590 842353 polygalacturonase, putative / pectinase, putative F:polygalacturonase activity;P:carbohydrate metabolic process;C:unknown;FPBMOVA O.I. C.G. H.G.
10.5 99.2 109.4 At5g28500 832943 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;BPO O.I. C.G. H.G.
10.5 99.2 50.7 At2g23390 816871 - F:molecular_function unknown;P:biological_process unknown;C:unknown;OBP O.I. C.G. H.G.
10.3 99.2 31.8 At1g71810 843511 ABC1 family protein F:protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast, plastoglobule;OBMPFAV O.I. C.G. H.G.
10.1 99.2 50.1 At3g16910 820946 AAE7 (ACYL-ACTIVATING ENZYME 7) Encodes a peroxisomal protein with acetyl-CoA synthetase activity that is responsible for the activation of acetate for entry into the glyoxylate cycle. O.I. C.G. H.G.
10.1 99.2 49.9 At3g30720 822807 QQS (QUA-QUINE STARCH) F:molecular_function unknown;P:starch biosynthetic process;C:cytosol;P O.I. C.G. H.G.
10.0 99.2 74.4 At4g18370 827564 DEG5 (DEGP PROTEASE 5) Encodes DEG5. Forms a hexamer with DEG8 in the thylakoid lumen. Involved in the cleavage of photodamaged D2 protein of photosystem II (PSII). O.I. C.G. H.G.
9.9 99.1 33.4 At4g31850 829314 PGR3 (PROTON GRADIENT REGULATION 3) encodes a protein containing 27 pentatrico-peptide repeat (PPR) motifs O.I. C.G. H.G.
9.9 99.1 15.2 At4g30825 829206 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:cell cycle;C:nucleus;POMFBA O.I. C.G. H.G.
9.8 99.1 47.0 At1g49380 841361 cytochrome c biogenesis protein family F:molecular_function unknown;P:cytochrome complex assembly;C:chloroplast;BOPM O.I. C.G. H.G.
9.7 99.1 28.5 At5g56850 835787 unknown protein F:unknown;P:unknown;C:unknown;OMBFPAV O.I. C.G. H.G.
9.6 99.1 111.9 At1g65230 842830 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PB O.I. C.G. H.G.
9.5 99.1 71.0 At5g37260 833700 RVE2 (REVEILLE 2) Encodes a MYB family transcription factor Circadian 1 (CIR1). Involved in circadian regulation in Arabidopsis. O.I. C.G. H.G.
9.3 99.1 40.9 At5g39210 833917 CRR7 (CHLORORESPIRATORY REDUCTION 7) Encodes a protein of the chloroplastic NAD(P)H dehydrogenase complex (NDH Complex) involved in respiration, photosystem I (PSI) cyclic electron transport and CO2 uptake. The product of this gene appears to be essential for the stable formation of the NDH Complex. O.I. C.G. H.G.
9.3 99.1 24.1 At4g16890 827397 SNC1 (SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1) Encodes a Toll Interleukin1 receptor-nucleotide binding-Leu- rich repeat-type resistance gene (TIR-NB-LRR-type) involved in the salicylic acid-dependent defense response pathway. Mutant plants constitutively express pathogenesis-related (PR) genes and are pathogen resistant. Resistance signaling in snc1 requires EDS1, MOS3 and PAD4. O.I. C.G. H.G.
9.2 99.1 145.5 At1g78020 844137 senescence-associated protein-related F:unknown;P:unknown;C:unknown;P O.I. C.G. H.G.
9.2 99.1 36.6 At1g58848 842226 ATP binding / protein binding F:protein binding, ATP binding;P:defense response, apoptosis;C:unknown;PBMOFA O.I. C.G. H.G.
9.2 99.1 29.4 At3g46530 823806 RPP13 (RECOGNITION OF PERONOSPORA PARASITICA 13) Confers resistance to the biotrophic oomycete, Peronospora parasitica. Encodes an NBS-LRR type R protein with a putative amino-terminal leucine zipper. Fungal protein ATR13 induces RPP13 gene expression and disease resistance. O.I. C.G. H.G.
9.1 99.1 247.8 At3g63160 825491 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast outer membrane, thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast envelope;P O.I. C.G. H.G.
9.1 99.1 79.4 At1g56500 842103 haloacid dehalogenase-like hydrolase family protein F:hydrolase activity, oxidoreductase activity, catalytic activity;P:metabolic process, cell redox homeostasis;C:chloroplast, chloroplast stroma;BOMPAFV O.I. C.G. H.G.
9.1 99.1 29.4 At1g04620 839472 coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family F:coenzyme F420 hydrogenase activity;P:biological_process unknown;C:chloroplast;BAOP O.I. C.G. H.G.
9.1 99.1 17.2 At2g04790 815022 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PO O.I. C.G. H.G.
9.0 99.1 56.2 At3g20810 821629 transcription factor jumonji (jmjC) domain-containing protein F:transcription factor activity;P:biological_process unknown;C:cellular_component unknown;MBOFPV O.I. C.G. H.G.
9.0 99.1 16.2 At5g55740 835668 CRR21 (chlororespiratory reduction 21) Encodes a member of the E+ subgroup of the PPR protein family, containing the E and E+ motifs following a tandem array of PPR motifs. It also contains an unknown motif consisting of 15 aa, which is highly conserved in some PPR proteins, including CRR4. CRR21 is involved in RNA editing of the site 2 of ndhD (ndhD-2),which encodes a subunit of the NDH complex. The RNA editing changes aa 128 from Ser to Leu. Mutants have impaired NDH complex activity. O.I. C.G. H.G.
9.0 99.1 14.6 At2g15820 816078 OTP51 (ORGANELLE TRANSCRIPT PROCESSING 51) Encodes a protein that promotes splicing of type II introns. otp51 mutants fail to splice intron 2 of plastid ycf3 transcripts, a factor required for the assembly of Photosystem I. Therefore, homozygous otp51 mutants have profound photosynthetic defects and can only survive in sucrose-supplemented in vitro cultures under low light conditions. OTP51 may also be involved in splicing several other transcripts and precursor forms of the trnL, trnG, trnI, and trnA transcripts also accumulate in otp51 mutants. Although OTP51 shares some homology with DNA endonucleases, it lacks key catalytic residues suggesting that it does not participate in DNA cleavage. O.I. C.G. H.G.
8.7 99.0 63.1 At5g53580 835440 aldo/keto reductase family protein F:oxidoreductase activity, aldo-keto reductase activity;P:oxidation reduction;C:chloroplast;BOMFPA O.I. C.G. H.G.
8.7 99.0 24.7 At5g48730 834931 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:chloroplast;POMFBA O.I. C.G. H.G.
8.6 99.0 55.4 At4g19530 827695 disease resistance protein (TIR-NBS-LRR class), putative Encodes a TIR-NB-LRR resistance protein. Transient expression in tobacco induces cell death. O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
79.3	99.9	259.7	At5g59720	836093	HSP18.2 (heat shock protein 18.2)	encodes a low molecular weight heat shock protein that contains the heat shock element in the promoter region. Expression is induced in response to heat shock.	O.I.	C.G.	H.G.
36.3	99.7	56.9	At5g02830	831772	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:biological_process unknown;C:chloroplast;POMFBA	O.I.	C.G.	H.G.
31.4	99.7	18.7	At2g32290	817789	BAM6 (BETA-AMYLASE 6)	F:cation binding, beta-amylase activity, catalytic activity;P:cellulose biosynthetic process, carbohydrate metabolic process, polysaccharide catabolic process;C:chloroplast;PBO	O.I.	C.G.	H.G.
30.7	99.7	64.9	At4g12830	826895	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:unknown;C:chloroplast;BOMPFA	O.I.	C.G.	H.G.
24.8	99.6	120.9	At4g10120	826603	ATSPS4F	Encodes a protein with putative sucrose-phosphate synthase activity.	O.I.	C.G.	H.G.
22.0	99.6	53.3	At5g13730	831218	SIG4 (SIGMA FACTOR 4)	Encodes sigma 4 factor, involved in regulating the activity of the plastid-encoded RNA polymerase PEP. Regulates the overall quantity of NDH complexes and thus influences NDH activity.	O.I.	C.G.	H.G.
20.5	99.6	99.0	At3g55630	824729	ATDFD (A. THALIANA DHFS-FPGS HOMOLOG D)	F:tetrahydrofolylpolyglutamate synthase activity;P:one-carbon compound metabolic process;C:cytosol;BOFMPA	O.I.	C.G.	H.G.
20.4	99.6	41.1	At5g58310	835943	MES18 (METHYL ESTERASE 18)	Encodes a protein shown to have methyl IAA esterase activity in vitro. This protein does not act on methyl JA, MeSA, MeGA4, or MEGA9 in vitro.	O.I.	C.G.	H.G.
18.3	99.5	113.7	At3g28270	822453	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMPOAFV	O.I.	C.G.	H.G.
17.3	99.5	8.3	At3g10150	820178	PAP16 (PURPLE ACID PHOSPHATASE 16)	F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:biological_process unknown;C:membrane;FBPO	O.I.	C.G.	H.G.
17.0	99.5	13.1	At3g16360	820883	AHP4 (HPT PHOSPHOTRANSMITTER 4)	Encodes AHP4, a histidine-containing phosphotransmitter involved in Histidine (His)-to-Aspartate (Asp) phosphorelay signal transduction. AHP4 is one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs). AHPs function as redundant positive regulators of cytokinin signaling. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6).	O.I.	C.G.	H.G.
16.1	99.5	15.5	At5g44410	834467	FAD-binding domain-containing protein	F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAM	O.I.	C.G.	H.G.
15.2	99.4	24.5	At1g69523	843286	UbiE/COQ5 methyltransferase family protein	F:methyltransferase activity;P:metabolic process;C:chloroplast;BOFAMP	O.I.	C.G.	H.G.
14.7	99.4	105.0	At5g17310	831596	UTP--glucose-1-phosphate uridylyltransferase, putative / UDP-glucose pyrophosphorylase, putative / UGPase, putative	F:UTP:glucose-1-phosphate uridylyltransferase activity, nucleotidyltransferase activity;P:response to cadmium ion, response to salt stress, metabolic process;C:plasma membrane;MBFPO	O.I.	C.G.	H.G.
14.4	99.4	32.2	At4g09350	826517	DNAJ heat shock N-terminal domain-containing protein	F:heat shock protein binding;P:protein folding;C:chloroplast;BOMFPAV	O.I.	C.G.	H.G.
14.3	99.4	130.9	At5g63780	836498	SHA1 (shoot apical meristem arrest 1)	Encodes SHA1 (shoot apical meristem arrest), a putative E3 ligase (a RING finger protein) required for post-embryonic SAM maintenance. The mutant sha1-1 shows a primary SAM-deficient phenotype at the adult stage.	O.I.	C.G.	H.G.
14.2	99.4	67.7	At3g48200	823977	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BOP	O.I.	C.G.	H.G.
13.9	99.4	89.6	At1g74880	843827	NDH-O (NAD(P)H:plastoquinone dehydrogenase complex subunit O)	Encodes subunit NDH-O of NAD(P)H:plastoquinone dehydrogenase complex (Ndh complex) present in the thylakoid membrane of chloroplasts. This subunit is thought to be required for Ndh complex assembly.	O.I.	C.G.	H.G.
13.5	99.4	112.0	At3g16250	820871	NDF4 (NDH-DEPENDENT CYCLIC ELECTRON FLOW 1)	encodes a novel subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in cyclic electron flow around photosystem I to produce ATP. Contains a 4Fe-4S cluster.	O.I.	C.G.	H.G.
13.5	99.4	89.5	At1g07440	837256	tropinone reductase, putative / tropine dehydrogenase, putative	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV	O.I.	C.G.	H.G.
13.4	99.4	28.1	At5g59670	836088	leucine-rich repeat protein kinase, putative	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
12.9	99.3	32.7	At5g62140	836334	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBO	O.I.	C.G.	H.G.
12.7	99.3	57.7	At3g01440	821143	oxygen evolving enhancer 3 (PsbQ) family protein	F:calcium ion binding;P:photosynthesis, light reaction;C:chloroplast thylakoid membrane, chloroplast photosystem II, chloroplast thylakoid lumen, chloroplast, oxygen evolving complex;P	O.I.	C.G.	H.G.
12.5	99.3	118.2	At5g58260	835938	-	Encodes subunit NDH-N of NAD(P)H:plastoquinone dehydrogenase complex (Ndh complex) present in the thylakoid membrane of chloroplasts. This subunit is thought to be required for Ndh complex assembly.	O.I.	C.G.	H.G.
12.1	99.3	79.7	At4g12310	826840	CYP706A5	member of CYP706A	O.I.	C.G.	H.G.
12.1	99.3	40.4	At1g26230	839164	chaperonin, putative	F:protein binding, ATP binding;P:cellular protein metabolic process;C:chloroplast;BOMFPAV	O.I.	C.G.	H.G.
12.1	99.3	11.7	At5g66520	836784	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;POMFBA	O.I.	C.G.	H.G.
11.8	99.3	55.5	At4g18240	827550	ATSS4	F:transferase activity, transferring glycosyl groups;P:starch metabolic process;C:chloroplast;MOBPFAV	O.I.	C.G.	H.G.
11.8	99.3	44.0	At1g22630	838869	unknown protein	F:unknown;P:unknown;C:chloroplast;MPBO	O.I.	C.G.	H.G.
11.6	99.3	33.5	At3g01660	821098	methyltransferase	F:methyltransferase activity;P:metabolic process;C:cellular_component unknown;BOPMAF	O.I.	C.G.	H.G.
11.6	99.3	20.0	At3g22150	821779	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:unknown;C:chloroplast;POMFBA	O.I.	C.G.	H.G.
11.5	99.3	12.2	At4g19510	827692	disease resistance protein (TIR-NBS-LRR class), putative	F:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMOBFA	O.I.	C.G.	H.G.
11.4	99.3	61.5	At5g37670	833746	15.7 kDa class I-related small heat shock protein-like (HSP15.7-CI)	F:molecular_function unknown;P:response to heat;C:unknown;BPOFAM	O.I.	C.G.	H.G.
11.4	99.3	47.0	At4g33500	829488	protein phosphatase 2C-related / PP2C-related	F:protein serine/threonine phosphatase activity, catalytic activity;P:unknown;C:chloroplast;MOBFPAV	O.I.	C.G.	H.G.
11.3	99.3	36.7	At3g10840	820253	hydrolase, alpha/beta fold family protein	F:hydrolase activity, catalytic activity;P:unknown;C:chloroplast envelope;BOMPFAV	O.I.	C.G.	H.G.
11.0	99.2	24.9	At1g74070	843747	peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein	F:peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:chloroplast thylakoid lumen, chloroplast;MPFOB	O.I.	C.G.	H.G.
10.8	99.2	87.9	At1g01790	837332	KEA1 (K EFFLUX ANTIPORTER 1)	K efflux antiporter KEA1	O.I.	C.G.	H.G.
10.7	99.2	52.1	At5g58770	835991	dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putative	F:dehydrodolichyl diphosphate synthase activity;P:dolichol biosynthetic process;C:chloroplast;OBAFMP	O.I.	C.G.	H.G.
10.7	99.2	40.5	At1g60590	842353	polygalacturonase, putative / pectinase, putative	F:polygalacturonase activity;P:carbohydrate metabolic process;C:unknown;FPBMOVA	O.I.	C.G.	H.G.
10.5	99.2	109.4	At5g28500	832943	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;BPO	O.I.	C.G.	H.G.
10.5	99.2	50.7	At2g23390	816871	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;OBP	O.I.	C.G.	H.G.
10.3	99.2	31.8	At1g71810	843511	ABC1 family protein	F:protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast, plastoglobule;OBMPFAV	O.I.	C.G.	H.G.
10.1	99.2	50.1	At3g16910	820946	AAE7 (ACYL-ACTIVATING ENZYME 7)	Encodes a peroxisomal protein with acetyl-CoA synthetase activity that is responsible for the activation of acetate for entry into the glyoxylate cycle.	O.I.	C.G.	H.G.
10.1	99.2	49.9	At3g30720	822807	QQS (QUA-QUINE STARCH)	F:molecular_function unknown;P:starch biosynthetic process;C:cytosol;P	O.I.	C.G.	H.G.
10.0	99.2	74.4	At4g18370	827564	DEG5 (DEGP PROTEASE 5)	Encodes DEG5. Forms a hexamer with DEG8 in the thylakoid lumen. Involved in the cleavage of photodamaged D2 protein of photosystem II (PSII).	O.I.	C.G.	H.G.
9.9	99.1	33.4	At4g31850	829314	PGR3 (PROTON GRADIENT REGULATION 3)	encodes a protein containing 27 pentatrico-peptide repeat (PPR) motifs	O.I.	C.G.	H.G.
9.9	99.1	15.2	At4g30825	829206	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:cell cycle;C:nucleus;POMFBA	O.I.	C.G.	H.G.
9.8	99.1	47.0	At1g49380	841361	cytochrome c biogenesis protein family	F:molecular_function unknown;P:cytochrome complex assembly;C:chloroplast;BOPM	O.I.	C.G.	H.G.
9.7	99.1	28.5	At5g56850	835787	unknown protein	F:unknown;P:unknown;C:unknown;OMBFPAV	O.I.	C.G.	H.G.
9.6	99.1	111.9	At1g65230	842830	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PB	O.I.	C.G.	H.G.
9.5	99.1	71.0	At5g37260	833700	RVE2 (REVEILLE 2)	Encodes a MYB family transcription factor Circadian 1 (CIR1). Involved in circadian regulation in Arabidopsis.	O.I.	C.G.	H.G.
9.3	99.1	40.9	At5g39210	833917	CRR7 (CHLORORESPIRATORY REDUCTION 7)	Encodes a protein of the chloroplastic NAD(P)H dehydrogenase complex (NDH Complex) involved in respiration, photosystem I (PSI) cyclic electron transport and CO2 uptake. The product of this gene appears to be essential for the stable formation of the NDH Complex.	O.I.	C.G.	H.G.
9.3	99.1	24.1	At4g16890	827397	SNC1 (SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1)	Encodes a Toll Interleukin1 receptor-nucleotide binding-Leu- rich repeat-type resistance gene (TIR-NB-LRR-type) involved in the salicylic acid-dependent defense response pathway. Mutant plants constitutively express pathogenesis-related (PR) genes and are pathogen resistant. Resistance signaling in snc1 requires EDS1, MOS3 and PAD4.	O.I.	C.G.	H.G.
9.2	99.1	145.5	At1g78020	844137	senescence-associated protein-related	F:unknown;P:unknown;C:unknown;P	O.I.	C.G.	H.G.
9.2	99.1	36.6	At1g58848	842226	ATP binding / protein binding	F:protein binding, ATP binding;P:defense response, apoptosis;C:unknown;PBMOFA	O.I.	C.G.	H.G.
9.2	99.1	29.4	At3g46530	823806	RPP13 (RECOGNITION OF PERONOSPORA PARASITICA 13)	Confers resistance to the biotrophic oomycete, Peronospora parasitica. Encodes an NBS-LRR type R protein with a putative amino-terminal leucine zipper. Fungal protein ATR13 induces RPP13 gene expression and disease resistance.	O.I.	C.G.	H.G.
9.1	99.1	247.8	At3g63160	825491	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast outer membrane, thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast envelope;P	O.I.	C.G.	H.G.
9.1	99.1	79.4	At1g56500	842103	haloacid dehalogenase-like hydrolase family protein	F:hydrolase activity, oxidoreductase activity, catalytic activity;P:metabolic process, cell redox homeostasis;C:chloroplast, chloroplast stroma;BOMPAFV	O.I.	C.G.	H.G.
9.1	99.1	29.4	At1g04620	839472	coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family	F:coenzyme F420 hydrogenase activity;P:biological_process unknown;C:chloroplast;BAOP	O.I.	C.G.	H.G.
9.1	99.1	17.2	At2g04790	815022	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PO	O.I.	C.G.	H.G.
9.0	99.1	56.2	At3g20810	821629	transcription factor jumonji (jmjC) domain-containing protein	F:transcription factor activity;P:biological_process unknown;C:cellular_component unknown;MBOFPV	O.I.	C.G.	H.G.
9.0	99.1	16.2	At5g55740	835668	CRR21 (chlororespiratory reduction 21)	Encodes a member of the E+ subgroup of the PPR protein family, containing the E and E+ motifs following a tandem array of PPR motifs. It also contains an unknown motif consisting of 15 aa, which is highly conserved in some PPR proteins, including CRR4. CRR21 is involved in RNA editing of the site 2 of ndhD (ndhD-2),which encodes a subunit of the NDH complex. The RNA editing changes aa 128 from Ser to Leu. Mutants have impaired NDH complex activity.	O.I.	C.G.	H.G.
9.0	99.1	14.6	At2g15820	816078	OTP51 (ORGANELLE TRANSCRIPT PROCESSING 51)	Encodes a protein that promotes splicing of type II introns. otp51 mutants fail to splice intron 2 of plastid ycf3 transcripts, a factor required for the assembly of Photosystem I. Therefore, homozygous otp51 mutants have profound photosynthetic defects and can only survive in sucrose-supplemented in vitro cultures under low light conditions. OTP51 may also be involved in splicing several other transcripts and precursor forms of the trnL, trnG, trnI, and trnA transcripts also accumulate in otp51 mutants. Although OTP51 shares some homology with DNA endonucleases, it lacks key catalytic residues suggesting that it does not participate in DNA cleavage.	O.I.	C.G.	H.G.
8.7	99.0	63.1	At5g53580	835440	aldo/keto reductase family protein	F:oxidoreductase activity, aldo-keto reductase activity;P:oxidation reduction;C:chloroplast;BOMFPA	O.I.	C.G.	H.G.
8.7	99.0	24.7	At5g48730	834931	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:biological_process unknown;C:chloroplast;POMFBA	O.I.	C.G.	H.G.
8.6	99.0	55.4	At4g19530	827695	disease resistance protein (TIR-NBS-LRR class), putative	Encodes a TIR-NB-LRR resistance protein. Transient expression in tobacco induces cell death.	O.I.	C.G.	H.G.

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GSM ID	GSM131463
Assay name	AtGen_6-9511_Heatstress(3h)+9hrecovery-Shoots-12.0h_Rep1
GSE experiment	GSE5628: AtGenExpress: Stress Treatments (Heat stress)

Microarray experiments to specifically-expressed genes

GSM ID GSM131463 Assay name AtGen_6-9511_Heatstress(3h)+9hrecovery-Shoots-12.0h_Rep1 GSE experiment GSE5628: AtGenExpress: Stress Treatments (Heat stress)

GSM ID GSM131463

Assay name AtGen_6-9511_Heatstress(3h)+9hrecovery-Shoots-12.0h_Rep1

GSE experiment GSE5628: AtGenExpress: Stress Treatments (Heat stress)