CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM131461

Assay name AtGen_6-9421_Heatstress(3h)+3hrecovery-Roots-6.0h_Rep1

GSE experiment GSE5628: AtGenExpress: Stress Treatments (Heat stress)

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
214.5 100.0 427.1 At5g59720 836093 HSP18.2 (heat shock protein 18.2) encodes a low molecular weight heat shock protein that contains the heat shock element in the promoter region. Expression is induced in response to heat shock. O.I. C.G. H.G.
44.6 99.8 65.9 At2g23030 816833 SNRK2.9 (SNF1-RELATED PROTEIN KINASE 2.9) encodes a member of SNF1-related protein kinases (SnRK2) O.I. C.G. H.G.
34.1 99.7 25.1 At4g11880 826795 AGL14 (agamous-like 14) AGL12, AGL14, and AGL17 are all preferentially expressed in root tissues and therefore represent the only characterized MADS box genes expressed in roots. O.I. C.G. H.G.
33.6 99.7 44.9 At2g29330 817482 TRI (tropinone reductase) F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAV O.I. C.G. H.G.
31.4 99.7 35.7 At5g22890 832353 zinc finger (C2H2 type) family protein F:transcription factor activity;P:response to chitin, regulation of transcription;C:intracellular;MOPF O.I. C.G. H.G.
25.6 99.7 42.8 At1g02220 839476 ANAC003 (Arabidopsis NAC domain containing protein 3) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PF O.I. C.G. H.G.
25.2 99.6 22.1 At5g52790 835356 CBS domain-containing protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BOMFPA O.I. C.G. H.G.
24.5 99.6 206.7 At1g80830 844422 NRAMP1 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 1) Thought to be involved in iron homeostasis. Induced in leaves in response to iron deficiency. Transgenic plants accumulate toxic levels of iron. Gene complements yeast iron uptake mutants. O.I. C.G. H.G.
24.5 99.6 66.4 At3g24240 822011 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
23.9 99.6 132.5 At2g25980 817139 jacalin lectin family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO O.I. C.G. H.G.
23.9 99.6 20.5 At5g67430 836879 GCN5-related N-acetyltransferase (GNAT) family protein F:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;PBA O.I. C.G. H.G.
23.2 99.6 10.7 At1g48510 841272 cytochrome c oxidase assembly protein surfeit-related F:molecular_function unknown;P:biological_process unknown;C:unknown;OMFPB O.I. C.G. H.G.
21.8 99.6 44.1 At3g14680 820696 CYP72A14 putative cytochrome P450 O.I. C.G. H.G.
20.4 99.6 111.3 At5g65210 836646 TGA1 F:transcription factor activity, calmodulin binding, DNA binding;P:defense response to bacterium;C:nucleus;POM O.I. C.G. H.G.
19.8 99.6 28.9 At5g48940 834952 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:unknown;MPOBFVA O.I. C.G. H.G.
19.2 99.6 25.9 At4g14390 827084 ankyrin repeat family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFBVA O.I. C.G. H.G.
18.1 99.5 127.3 At2g19800 816499 MIOX2 (MYO-INOSITOL OXYGENASE 2) Encodes a myo-inositol oxygenase family gene. O.I. C.G. H.G.
18.1 99.5 21.9 At3g25790 822170 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POM O.I. C.G. H.G.
17.5 99.5 107.3 At4g10250 826616 ATHSP22.0 Columbia endomembrane-localized small heat shock protein O.I. C.G. H.G.
17.1 99.5 18.1 At5g42630 834270 ATS (ABERRANT TESTA SHAPE) Encodes a member of the KANADI family of putative transcription factors. Involved in integument formation during ovule development and expressed at the boundary between the inner and outer integuments. It is essential for directing laminar growth of the inner integument.Along with KAN1 and KAN2, KAN4 is involved in proper localization of PIN1 in early embryogenesis. O.I. C.G. H.G.
16.4 99.5 102.1 At3g09220 820078 LAC7 (laccase 7) putative laccase, a member of laccase family of genes (17 members in Arabidopsis). O.I. C.G. H.G.
16.0 99.5 68.6 At1g30270 839907 CIPK23 (CBL-INTERACTING PROTEIN KINASE 23) Arabidopsis thaliana CBL-interacting protein kinase 23. CIPK23 serves as a positive regulator of the potassium transporter AKT1 by directly phosphorylates AKT1. CIPK23 is activated by the binding of two calcineurin B-like proteins, CBL1 and CBL9. O.I. C.G. H.G.
15.9 99.5 13.0 At5g39970 833994 catalytic F:catalytic activity;P:biological_process unknown;C:anchored to membrane;OBPMAF O.I. C.G. H.G.
15.7 99.5 12.2 At1g67710 843096 ARR11 (RESPONSE REGULATOR 11) Encodes an Arabidopsis response regulator (ARR) protein that acts in concert with other type-B ARRs in the cytokinin signaling pathway. O.I. C.G. H.G.
15.5 99.5 384.2 At4g39260 830082 GR-RBP8 Encodes a glycine-rich protein with RNA binding domain at the N-terminus. Protein is structurally similar to proteins induced by stress in other plants. Gene expression is induced by cold. Transcript undergoes circadian oscillations that is depressed by overexpression of AtGRP7. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase). O.I. C.G. H.G.
15.5 99.5 26.0 At1g12160 837768 flavin-containing monooxygenase family protein / FMO family protein F:NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity;P:biological_process unknown;C:cellular_component unknown;BOMFPA O.I. C.G. H.G.
15.5 99.5 7.2 At3g20090 821552 CYP705A18 member of CYP705A O.I. C.G. H.G.
15.4 99.5 113.4 At3g62040 825377 catalytic/ hydrolase F:hydrolase activity, catalytic activity;P:metabolic process;C:unknown;OBPFA O.I. C.G. H.G.
15.3 99.4 39.2 At1g26440 839185 ATUPS5 (ARABIDOPSIS THALIANA UREIDE PERMEASE 5) uptake assays in a yeast mutant indicated this splice variant is not a cellular importer for allantoin, uracil or xanthine O.I. C.G. H.G.
15.3 99.4 26.9 At3g13760 820585 DC1 domain-containing protein F:protein binding, zinc ion binding;P:unknown;C:membrane;PMO O.I. C.G. H.G.
15.3 99.4 11.9 At4g19980 827742 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
15.2 99.4 22.3 At1g07560 837270 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
15.0 99.4 42.8 At1g54890 841928 late embryogenesis abundant protein-related / LEA protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
14.8 99.4 120.0 At2g36290 818200 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:biological_process unknown;C:endoplasmic reticulum;BPOFA O.I. C.G. H.G.
14.6 99.4 88.3 At5g20960 832221 AAO1 (ARABIDOPSIS ALDEHYDE OXIDASE 1) Encodes aldehyde oxidase AA01. O.I. C.G. H.G.
14.2 99.4 22.7 At3g27150 822334 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBVFA O.I. C.G. H.G.
14.1 99.4 65.6 At1g68050 843133 FKF1 (FLAVIN-BINDING, KELCH REPEAT, F BOX 1) Encodes FKF1, a flavin-binding kelch repeat F box protein, is clock-controlled, regulates transition to flowering. Forms a complex with GI on the CO promoter to regulate CO expression. O.I. C.G. H.G.
14.1 99.4 16.3 At1g55740 842023 AtSIP1 (Arabidopsis thaliana seed imbibition 1) F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:unknown;C:cellular_component unknown;PFBAO O.I. C.G. H.G.
13.8 99.4 23.8 At3g04570 819613 DNA-binding protein-related F:unknown;P:biological_process unknown;C:unknown;BPMOFVA O.I. C.G. H.G.
13.8 99.4 12.3 At2g39410 818526 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:unknown;BPOMVA O.I. C.G. H.G.
13.5 99.4 229.5 At4g30170 829140 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB O.I. C.G. H.G.
13.5 99.4 44.9 At5g63560 836475 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PF O.I. C.G. H.G.
13.4 99.4 113.9 At5g59520 836071 ZIP2 encodes a metal ion transporter whose expression is regulated by copper. O.I. C.G. H.G.
13.2 99.4 17.3 At5g43040 834319 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;PMO O.I. C.G. H.G.
13.1 99.4 79.1 At2g40080 818596 ELF4 (EARLY FLOWERING 4) Encodes a novel nuclear 111 amino-acid phytochrome-regulated component of a negative feedback loop involving the circadian clock central oscillator components CCA1 and LHY. ELF4 is necessary for light-induced expression of both CCA1 and LHY, and conversely, CCA1 and LHY act negatively on light-induced ELF4 expression. ELF4 promotes clock accuracy and is required for sustained rhythms in the absence of daily light/dark cycles. It is involved in the phyB-mediated constant red light induced seedling de-etiolation process and may function to coregulate the expression of a subset of phyB-regulated genes. O.I. C.G. H.G.
13.0 99.4 23.7 At5g54040 835487 DC1 domain-containing protein F:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMOF O.I. C.G. H.G.
13.0 99.4 15.9 At3g27950 822419 early nodule-specific protein, putative F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM O.I. C.G. H.G.
13.0 99.4 11.6 At5g05400 830422 disease resistance protein (CC-NBS-LRR class), putative F:protein binding, ATP binding;P:N-terminal protein myristoylation, defense response, apoptosis;C:chloroplast;PMBOFA O.I. C.G. H.G.
12.9 99.3 39.0 At1g51830 841610 ATP binding / kinase/ protein serine/threonine kinase F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:cellular_component unknown;PMOBFVA O.I. C.G. H.G.
12.9 99.3 9.9 At1g29180 839792 DC1 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM O.I. C.G. H.G.
12.8 99.3 30.8 At2g35380 818105 peroxidase 20 (PER20) (P20) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB O.I. C.G. H.G.
12.8 99.3 27.7 At2g25590 817098 agenet domain-containing protein F:RNA binding;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
12.7 99.3 12.6 At1g55940 842045 CYP708A1 member of CYP708A O.I. C.G. H.G.
12.6 99.3 99.4 At2g18980 816415 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM O.I. C.G. H.G.
12.6 99.3 17.0 At3g45410 823679 lectin protein kinase family protein encodes a receptor-like kinase that has serine/threonine kinase activity whose expression is induced by high salt stress. This induction is inhibited by tobacco ethylene receptor. O.I. C.G. H.G.
12.5 99.3 26.0 At3g55850 824751 LAF3 (LONG AFTER FAR-RED 3) Encodes a product that might regulate nucleo-cytoplasmic trafficking of an intermediate(s) involved in phyA signal transduction. Differs from isoform 1 only in the first few N-terminal amino acids. O.I. C.G. H.G.
12.4 99.3 49.0 At4g25710 828676 kelch repeat-containing F-box family protein F:molecular_function unknown;P:unknown;C:cellular_component unknown;PMABO O.I. C.G. H.G.
12.4 99.3 40.2 At3g44540 823579 FAR4 (FATTY ACID REDUCTASE 4) F:oxidoreductase activity, acting on the CH-CH group of donors, binding, catalytic activity;P:microsporogenesis, metabolic process;C:cellular_component unknown;MBPOF O.I. C.G. H.G.
12.3 99.3 30.9 At4g14580 827106 CIPK4 (CBL-interacting protein kinase 4) CBL-interacting protein kinase O.I. C.G. H.G.
12.2 99.3 21.9 At5g48290 834882 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;POBF O.I. C.G. H.G.
12.2 99.3 20.6 At5g45080 834539 AtPP2-A6 (Phloem protein 2-A6) F:carbohydrate binding;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;P O.I. C.G. H.G.
12.2 99.3 13.4 At4g15380 827204 CYP705A4 member of CYP705A O.I. C.G. H.G.
12.1 99.3 78.9 At2g07751 815347 NADH-ubiquinone oxidoreductase chain 3, putative F:NADH dehydrogenase (ubiquinone) activity;P:mitochondrial electron transport, NADH to ubiquinone;C:endomembrane system;MOBPFA O.I. C.G. H.G.
12.1 99.3 26.2 At1g71400 843481 AtRLP12 (Receptor Like Protein 12) F:protein binding;P:signal transduction, defense response;C:endomembrane system;PMOBFAV O.I. C.G. H.G.
11.8 99.3 238.1 At4g15390 827205 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO O.I. C.G. H.G.
11.8 99.3 87.1 At2g19970 816516 pathogenesis-related protein, putative F:molecular_function unknown;P:biological_process unknown;C:extracellular region;MPFBO O.I. C.G. H.G.
11.7 99.3 33.8 At3g12230 820403 scpl14 (serine carboxypeptidase-like 14) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB O.I. C.G. H.G.
11.7 99.3 29.3 At3g49860 824148 ATARLA1B (ADP-ribosylation factor-like A1B) A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases. O.I. C.G. H.G.
11.7 99.3 23.8 At3g23470 821928 cyclopropane-fatty-acyl-phospholipid synthase F:cyclopropane-fatty-acyl-phospholipid synthase activity;P:lipid biosynthetic process;C:endomembrane system;OBFPAM O.I. C.G. H.G.
11.6 99.3 36.4 At3g26770 822290 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAV O.I. C.G. H.G.
11.6 99.3 23.4 At2g15790 816074 SQN (SQUINT) SQN encodes the Arabidopsis homolog of cyclophilin 40 (CyP40). It is specifically required for the vegetative but not the reproductive maturation of the shoot. O.I. C.G. H.G.
11.6 99.3 20.8 At2g31580 817716 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOABPV O.I. C.G. H.G.
11.5 99.3 85.8 At1g12010 837753 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative encodes a protein whose sequence is similar to 1-amino-cyclopropane-1-carboxylic acid oxidase O.I. C.G. H.G.
11.5 99.3 38.9 At2g44890 819098 CYP704A1 member of CYP704A O.I. C.G. H.G.
11.5 99.3 15.1 At5g10720 830938 AHK5 (ARABIDOPSIS HISTIDINE KINASE 5) member of Histidine Kinase O.I. C.G. H.G.
11.5 99.3 14.3 At1g13670 837928 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
11.5 99.3 11.3 At2g36090 818182 F-box family protein F:unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
11.5 99.3 9.4 At5g65050 836629 AGL31 (AGAMOUS LIKE MADS-BOX PROTEIN 31) Originally published as Agamous like MADS-box protein AGL31. One of a group of MADS box genes involved in control of flowering time. Four variant sequences have been identified for this locus but have not been characterized for differences in expression pattern and/or function. O.I. C.G. H.G.
11.4 99.3 96.9 At3g58550 825024 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:anchored to membrane;P O.I. C.G. H.G.
11.4 99.3 8.5 At1g18690 838450 transferase/ transferase, transferring glycosyl groups F:transferase activity, transferring glycosyl groups, transferase activity;P:biological_process unknown;C:integral to membrane;PFOM O.I. C.G. H.G.
11.3 99.3 18.2 At5g49770 835040 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
11.3 99.3 12.7 At3g47980 823953 integral membrane HPP family protein F:molecular_function unknown;P:biological_process unknown;C:integral to membrane, chloroplast;BOFP O.I. C.G. H.G.
11.2 99.2 46.3 At1g08430 837363 ALMT1 (ALUMINUM-ACTIVATED MALATE TRANSPORTER 1) Encodes a Al-activated malate efflux transporter. Is essential for aluminum tolerance but does not represent the major Al tolerance QTL. Staurosporine and calyculin A both block all changes in AtALMT1 gene expression (as a result malate release is totally inhibited). O.I. C.G. H.G.
11.2 99.2 27.1 At2g45920 819200 U-box domain-containing protein F:ubiquitin-protein ligase activity;P:protein ubiquitination;C:ubiquitin ligase complex;POMFBAV O.I. C.G. H.G.
11.2 99.2 13.6 At5g10100 830874 trehalose-6-phosphate phosphatase, putative F:catalytic activity, trehalose-phosphatase activity;P:trehalose biosynthetic process, metabolic process;C:chloroplast;BPMOFA O.I. C.G. H.G.
11.1 99.2 26.7 At4g13030 826917 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;BPMFO O.I. C.G. H.G.
11.1 99.2 16.1 At2g45830 819191 DTA2 (DOWNSTREAM TARGET OF AGL15 2) F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFOVB O.I. C.G. H.G.
11.0 99.2 72.9 At2g46690 819281 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PO O.I. C.G. H.G.
11.0 99.2 72.4 At1g29280 839802 WRKY65 member of WRKY Transcription Factor; Group II-e O.I. C.G. H.G.
11.0 99.2 23.0 At5g09290 830788 3'(2'),5'-bisphosphate nucleotidase, putative / inositol polyphosphate 1-phosphatase, putative F:3'(2'),5'-bisphosphate nucleotidase activity, inositol or phosphatidylinositol phosphatase activity;P:sulfur metabolic process;C:unknown;BOMFPA O.I. C.G. H.G.
10.9 99.2 51.9 At4g34600 829612 unknown protein F:molecular_function unknown;P:unknown;C:endomembrane system;P O.I. C.G. H.G.
10.9 99.2 39.5 At2g19580 816477 TET2 (TETRASPANIN2) Member of TETRASPANIN family O.I. C.G. H.G.
10.9 99.2 28.2 At4g35380 829691 guanine nucleotide exchange family protein F:binding, ARF guanyl-nucleotide exchange factor activity, guanyl-nucleotide exchange factor activity;P:regulation of ARF protein signal transduction;C:intracellular;MFOPBA O.I. C.G. H.G.
10.9 99.2 10.9 At1g10400 837580 UDP-glycosyltransferase/ transferase, transferring glycosyl groups F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:endomembrane system;PMVBOF O.I. C.G. H.G.
10.9 99.2 9.7 At4g23510 828451 disease resistance protein (TIR class), putative F:transmembrane receptor activity;P:defense response signaling pathway, resistance gene-dependent, signal transduction, defense response, innate immune response;C:intrinsic to membrane;PBO O.I. C.G. H.G.
10.8 99.2 93.2 At3g25190 822112 nodulin, putative F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPFA O.I. C.G. H.G.
10.8 99.2 66.9 At4g01450 828176 nodulin MtN21 family protein F:unknown;P:unknown;C:endomembrane system, membrane;PBOM O.I. C.G. H.G.
10.6 99.2 89.5 At5g04740 830352 ACT domain-containing protein F:amino acid binding;P:metabolic process;C:chloroplast thylakoid membrane, chloroplast stroma, chloroplast;POB O.I. C.G. H.G.
10.6 99.2 22.8 At3g12090 820383 TET6 (TETRASPANIN6) Member of TETRASPANIN family O.I. C.G. H.G.
10.5 99.2 51.9 At3g06390 819813 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
214.5	100.0	427.1	At5g59720	836093	HSP18.2 (heat shock protein 18.2)	encodes a low molecular weight heat shock protein that contains the heat shock element in the promoter region. Expression is induced in response to heat shock.	O.I.	C.G.	H.G.
44.6	99.8	65.9	At2g23030	816833	SNRK2.9 (SNF1-RELATED PROTEIN KINASE 2.9)	encodes a member of SNF1-related protein kinases (SnRK2)	O.I.	C.G.	H.G.
34.1	99.7	25.1	At4g11880	826795	AGL14 (agamous-like 14)	AGL12, AGL14, and AGL17 are all preferentially expressed in root tissues and therefore represent the only characterized MADS box genes expressed in roots.	O.I.	C.G.	H.G.
33.6	99.7	44.9	At2g29330	817482	TRI (tropinone reductase)	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAV	O.I.	C.G.	H.G.
31.4	99.7	35.7	At5g22890	832353	zinc finger (C2H2 type) family protein	F:transcription factor activity;P:response to chitin, regulation of transcription;C:intracellular;MOPF	O.I.	C.G.	H.G.
25.6	99.7	42.8	At1g02220	839476	ANAC003 (Arabidopsis NAC domain containing protein 3)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
25.2	99.6	22.1	At5g52790	835356	CBS domain-containing protein-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BOMFPA	O.I.	C.G.	H.G.
24.5	99.6	206.7	At1g80830	844422	NRAMP1 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 1)	Thought to be involved in iron homeostasis. Induced in leaves in response to iron deficiency. Transgenic plants accumulate toxic levels of iron. Gene complements yeast iron uptake mutants.	O.I.	C.G.	H.G.
24.5	99.6	66.4	At3g24240	822011	leucine-rich repeat transmembrane protein kinase, putative	F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
23.9	99.6	132.5	At2g25980	817139	jacalin lectin family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO	O.I.	C.G.	H.G.
23.9	99.6	20.5	At5g67430	836879	GCN5-related N-acetyltransferase (GNAT) family protein	F:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;PBA	O.I.	C.G.	H.G.
23.2	99.6	10.7	At1g48510	841272	cytochrome c oxidase assembly protein surfeit-related	F:molecular_function unknown;P:biological_process unknown;C:unknown;OMFPB	O.I.	C.G.	H.G.
21.8	99.6	44.1	At3g14680	820696	CYP72A14	putative cytochrome P450	O.I.	C.G.	H.G.
20.4	99.6	111.3	At5g65210	836646	TGA1	F:transcription factor activity, calmodulin binding, DNA binding;P:defense response to bacterium;C:nucleus;POM	O.I.	C.G.	H.G.
19.8	99.6	28.9	At5g48940	834952	leucine-rich repeat transmembrane protein kinase, putative	F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:unknown;MPOBFVA	O.I.	C.G.	H.G.
19.2	99.6	25.9	At4g14390	827084	ankyrin repeat family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFBVA	O.I.	C.G.	H.G.
18.1	99.5	127.3	At2g19800	816499	MIOX2 (MYO-INOSITOL OXYGENASE 2)	Encodes a myo-inositol oxygenase family gene.	O.I.	C.G.	H.G.
18.1	99.5	21.9	At3g25790	822170	myb family transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POM	O.I.	C.G.	H.G.
17.5	99.5	107.3	At4g10250	826616	ATHSP22.0	Columbia endomembrane-localized small heat shock protein	O.I.	C.G.	H.G.
17.1	99.5	18.1	At5g42630	834270	ATS (ABERRANT TESTA SHAPE)	Encodes a member of the KANADI family of putative transcription factors. Involved in integument formation during ovule development and expressed at the boundary between the inner and outer integuments. It is essential for directing laminar growth of the inner integument.Along with KAN1 and KAN2, KAN4 is involved in proper localization of PIN1 in early embryogenesis.	O.I.	C.G.	H.G.
16.4	99.5	102.1	At3g09220	820078	LAC7 (laccase 7)	putative laccase, a member of laccase family of genes (17 members in Arabidopsis).	O.I.	C.G.	H.G.
16.0	99.5	68.6	At1g30270	839907	CIPK23 (CBL-INTERACTING PROTEIN KINASE 23)	Arabidopsis thaliana CBL-interacting protein kinase 23. CIPK23 serves as a positive regulator of the potassium transporter AKT1 by directly phosphorylates AKT1. CIPK23 is activated by the binding of two calcineurin B-like proteins, CBL1 and CBL9.	O.I.	C.G.	H.G.
15.9	99.5	13.0	At5g39970	833994	catalytic	F:catalytic activity;P:biological_process unknown;C:anchored to membrane;OBPMAF	O.I.	C.G.	H.G.
15.7	99.5	12.2	At1g67710	843096	ARR11 (RESPONSE REGULATOR 11)	Encodes an Arabidopsis response regulator (ARR) protein that acts in concert with other type-B ARRs in the cytokinin signaling pathway.	O.I.	C.G.	H.G.
15.5	99.5	384.2	At4g39260	830082	GR-RBP8	Encodes a glycine-rich protein with RNA binding domain at the N-terminus. Protein is structurally similar to proteins induced by stress in other plants. Gene expression is induced by cold. Transcript undergoes circadian oscillations that is depressed by overexpression of AtGRP7. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase).	O.I.	C.G.	H.G.
15.5	99.5	26.0	At1g12160	837768	flavin-containing monooxygenase family protein / FMO family protein	F:NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity;P:biological_process unknown;C:cellular_component unknown;BOMFPA	O.I.	C.G.	H.G.
15.5	99.5	7.2	At3g20090	821552	CYP705A18	member of CYP705A	O.I.	C.G.	H.G.
15.4	99.5	113.4	At3g62040	825377	catalytic/ hydrolase	F:hydrolase activity, catalytic activity;P:metabolic process;C:unknown;OBPFA	O.I.	C.G.	H.G.
15.3	99.4	39.2	At1g26440	839185	ATUPS5 (ARABIDOPSIS THALIANA UREIDE PERMEASE 5)	uptake assays in a yeast mutant indicated this splice variant is not a cellular importer for allantoin, uracil or xanthine	O.I.	C.G.	H.G.
15.3	99.4	26.9	At3g13760	820585	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:unknown;C:membrane;PMO	O.I.	C.G.	H.G.
15.3	99.4	11.9	At4g19980	827742	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
15.2	99.4	22.3	At1g07560	837270	leucine-rich repeat protein kinase, putative	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
15.0	99.4	42.8	At1g54890	841928	late embryogenesis abundant protein-related / LEA protein-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
14.8	99.4	120.0	At2g36290	818200	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:biological_process unknown;C:endoplasmic reticulum;BPOFA	O.I.	C.G.	H.G.
14.6	99.4	88.3	At5g20960	832221	AAO1 (ARABIDOPSIS ALDEHYDE OXIDASE 1)	Encodes aldehyde oxidase AA01.	O.I.	C.G.	H.G.
14.2	99.4	22.7	At3g27150	822334	kelch repeat-containing F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBVFA	O.I.	C.G.	H.G.
14.1	99.4	65.6	At1g68050	843133	FKF1 (FLAVIN-BINDING, KELCH REPEAT, F BOX 1)	Encodes FKF1, a flavin-binding kelch repeat F box protein, is clock-controlled, regulates transition to flowering. Forms a complex with GI on the CO promoter to regulate CO expression.	O.I.	C.G.	H.G.
14.1	99.4	16.3	At1g55740	842023	AtSIP1 (Arabidopsis thaliana seed imbibition 1)	F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:unknown;C:cellular_component unknown;PFBAO	O.I.	C.G.	H.G.
13.8	99.4	23.8	At3g04570	819613	DNA-binding protein-related	F:unknown;P:biological_process unknown;C:unknown;BPMOFVA	O.I.	C.G.	H.G.
13.8	99.4	12.3	At2g39410	818526	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:unknown;C:unknown;BPOMVA	O.I.	C.G.	H.G.
13.5	99.4	229.5	At4g30170	829140	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB	O.I.	C.G.	H.G.
13.5	99.4	44.9	At5g63560	836475	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
13.4	99.4	113.9	At5g59520	836071	ZIP2	encodes a metal ion transporter whose expression is regulated by copper.	O.I.	C.G.	H.G.
13.2	99.4	17.3	At5g43040	834319	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;PMO	O.I.	C.G.	H.G.
13.1	99.4	79.1	At2g40080	818596	ELF4 (EARLY FLOWERING 4)	Encodes a novel nuclear 111 amino-acid phytochrome-regulated component of a negative feedback loop involving the circadian clock central oscillator components CCA1 and LHY. ELF4 is necessary for light-induced expression of both CCA1 and LHY, and conversely, CCA1 and LHY act negatively on light-induced ELF4 expression. ELF4 promotes clock accuracy and is required for sustained rhythms in the absence of daily light/dark cycles. It is involved in the phyB-mediated constant red light induced seedling de-etiolation process and may function to coregulate the expression of a subset of phyB-regulated genes.	O.I.	C.G.	H.G.
13.0	99.4	23.7	At5g54040	835487	DC1 domain-containing protein	F:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMOF	O.I.	C.G.	H.G.
13.0	99.4	15.9	At3g27950	822419	early nodule-specific protein, putative	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM	O.I.	C.G.	H.G.
13.0	99.4	11.6	At5g05400	830422	disease resistance protein (CC-NBS-LRR class), putative	F:protein binding, ATP binding;P:N-terminal protein myristoylation, defense response, apoptosis;C:chloroplast;PMBOFA	O.I.	C.G.	H.G.
12.9	99.3	39.0	At1g51830	841610	ATP binding / kinase/ protein serine/threonine kinase	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:cellular_component unknown;PMOBFVA	O.I.	C.G.	H.G.
12.9	99.3	9.9	At1g29180	839792	DC1 domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM	O.I.	C.G.	H.G.
12.8	99.3	30.8	At2g35380	818105	peroxidase 20 (PER20) (P20)	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB	O.I.	C.G.	H.G.
12.8	99.3	27.7	At2g25590	817098	agenet domain-containing protein	F:RNA binding;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
12.7	99.3	12.6	At1g55940	842045	CYP708A1	member of CYP708A	O.I.	C.G.	H.G.
12.6	99.3	99.4	At2g18980	816415	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM	O.I.	C.G.	H.G.
12.6	99.3	17.0	At3g45410	823679	lectin protein kinase family protein	encodes a receptor-like kinase that has serine/threonine kinase activity whose expression is induced by high salt stress. This induction is inhibited by tobacco ethylene receptor.	O.I.	C.G.	H.G.
12.5	99.3	26.0	At3g55850	824751	LAF3 (LONG AFTER FAR-RED 3)	Encodes a product that might regulate nucleo-cytoplasmic trafficking of an intermediate(s) involved in phyA signal transduction. Differs from isoform 1 only in the first few N-terminal amino acids.	O.I.	C.G.	H.G.
12.4	99.3	49.0	At4g25710	828676	kelch repeat-containing F-box family protein	F:molecular_function unknown;P:unknown;C:cellular_component unknown;PMABO	O.I.	C.G.	H.G.
12.4	99.3	40.2	At3g44540	823579	FAR4 (FATTY ACID REDUCTASE 4)	F:oxidoreductase activity, acting on the CH-CH group of donors, binding, catalytic activity;P:microsporogenesis, metabolic process;C:cellular_component unknown;MBPOF	O.I.	C.G.	H.G.
12.3	99.3	30.9	At4g14580	827106	CIPK4 (CBL-interacting protein kinase 4)	CBL-interacting protein kinase	O.I.	C.G.	H.G.
12.2	99.3	21.9	At5g48290	834882	heavy-metal-associated domain-containing protein	F:metal ion binding;P:metal ion transport;C:cellular_component unknown;POBF	O.I.	C.G.	H.G.
12.2	99.3	20.6	At5g45080	834539	AtPP2-A6 (Phloem protein 2-A6)	F:carbohydrate binding;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;P	O.I.	C.G.	H.G.
12.2	99.3	13.4	At4g15380	827204	CYP705A4	member of CYP705A	O.I.	C.G.	H.G.
12.1	99.3	78.9	At2g07751	815347	NADH-ubiquinone oxidoreductase chain 3, putative	F:NADH dehydrogenase (ubiquinone) activity;P:mitochondrial electron transport, NADH to ubiquinone;C:endomembrane system;MOBPFA	O.I.	C.G.	H.G.
12.1	99.3	26.2	At1g71400	843481	AtRLP12 (Receptor Like Protein 12)	F:protein binding;P:signal transduction, defense response;C:endomembrane system;PMOBFAV	O.I.	C.G.	H.G.
11.8	99.3	238.1	At4g15390	827205	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO	O.I.	C.G.	H.G.
11.8	99.3	87.1	At2g19970	816516	pathogenesis-related protein, putative	F:molecular_function unknown;P:biological_process unknown;C:extracellular region;MPFBO	O.I.	C.G.	H.G.
11.7	99.3	33.8	At3g12230	820403	scpl14 (serine carboxypeptidase-like 14)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB	O.I.	C.G.	H.G.
11.7	99.3	29.3	At3g49860	824148	ATARLA1B (ADP-ribosylation factor-like A1B)	A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases.	O.I.	C.G.	H.G.
11.7	99.3	23.8	At3g23470	821928	cyclopropane-fatty-acyl-phospholipid synthase	F:cyclopropane-fatty-acyl-phospholipid synthase activity;P:lipid biosynthetic process;C:endomembrane system;OBFPAM	O.I.	C.G.	H.G.
11.6	99.3	36.4	At3g26770	822290	short-chain dehydrogenase/reductase (SDR) family protein	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAV	O.I.	C.G.	H.G.
11.6	99.3	23.4	At2g15790	816074	SQN (SQUINT)	SQN encodes the Arabidopsis homolog of cyclophilin 40 (CyP40). It is specifically required for the vegetative but not the reproductive maturation of the shoot.	O.I.	C.G.	H.G.
11.6	99.3	20.8	At2g31580	817716	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOABPV	O.I.	C.G.	H.G.
11.5	99.3	85.8	At1g12010	837753	1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative	encodes a protein whose sequence is similar to 1-amino-cyclopropane-1-carboxylic acid oxidase	O.I.	C.G.	H.G.
11.5	99.3	38.9	At2g44890	819098	CYP704A1	member of CYP704A	O.I.	C.G.	H.G.
11.5	99.3	15.1	At5g10720	830938	AHK5 (ARABIDOPSIS HISTIDINE KINASE 5)	member of Histidine Kinase	O.I.	C.G.	H.G.
11.5	99.3	14.3	At1g13670	837928	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
11.5	99.3	11.3	At2g36090	818182	F-box family protein	F:unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
11.5	99.3	9.4	At5g65050	836629	AGL31 (AGAMOUS LIKE MADS-BOX PROTEIN 31)	Originally published as Agamous like MADS-box protein AGL31. One of a group of MADS box genes involved in control of flowering time. Four variant sequences have been identified for this locus but have not been characterized for differences in expression pattern and/or function.	O.I.	C.G.	H.G.
11.4	99.3	96.9	At3g58550	825024	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:anchored to membrane;P	O.I.	C.G.	H.G.
11.4	99.3	8.5	At1g18690	838450	transferase/ transferase, transferring glycosyl groups	F:transferase activity, transferring glycosyl groups, transferase activity;P:biological_process unknown;C:integral to membrane;PFOM	O.I.	C.G.	H.G.
11.3	99.3	18.2	At5g49770	835040	leucine-rich repeat transmembrane protein kinase, putative	F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
11.3	99.3	12.7	At3g47980	823953	integral membrane HPP family protein	F:molecular_function unknown;P:biological_process unknown;C:integral to membrane, chloroplast;BOFP	O.I.	C.G.	H.G.
11.2	99.2	46.3	At1g08430	837363	ALMT1 (ALUMINUM-ACTIVATED MALATE TRANSPORTER 1)	Encodes a Al-activated malate efflux transporter. Is essential for aluminum tolerance but does not represent the major Al tolerance QTL. Staurosporine and calyculin A both block all changes in AtALMT1 gene expression (as a result malate release is totally inhibited).	O.I.	C.G.	H.G.
11.2	99.2	27.1	At2g45920	819200	U-box domain-containing protein	F:ubiquitin-protein ligase activity;P:protein ubiquitination;C:ubiquitin ligase complex;POMFBAV	O.I.	C.G.	H.G.
11.2	99.2	13.6	At5g10100	830874	trehalose-6-phosphate phosphatase, putative	F:catalytic activity, trehalose-phosphatase activity;P:trehalose biosynthetic process, metabolic process;C:chloroplast;BPMOFA	O.I.	C.G.	H.G.
11.1	99.2	26.7	At4g13030	826917	unknown protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;BPMFO	O.I.	C.G.	H.G.
11.1	99.2	16.1	At2g45830	819191	DTA2 (DOWNSTREAM TARGET OF AGL15 2)	F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFOVB	O.I.	C.G.	H.G.
11.0	99.2	72.9	At2g46690	819281	auxin-responsive family protein	F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
11.0	99.2	72.4	At1g29280	839802	WRKY65	member of WRKY Transcription Factor; Group II-e	O.I.	C.G.	H.G.
11.0	99.2	23.0	At5g09290	830788	3'(2'),5'-bisphosphate nucleotidase, putative / inositol polyphosphate 1-phosphatase, putative	F:3'(2'),5'-bisphosphate nucleotidase activity, inositol or phosphatidylinositol phosphatase activity;P:sulfur metabolic process;C:unknown;BOMFPA	O.I.	C.G.	H.G.
10.9	99.2	51.9	At4g34600	829612	unknown protein	F:molecular_function unknown;P:unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
10.9	99.2	39.5	At2g19580	816477	TET2 (TETRASPANIN2)	Member of TETRASPANIN family	O.I.	C.G.	H.G.
10.9	99.2	28.2	At4g35380	829691	guanine nucleotide exchange family protein	F:binding, ARF guanyl-nucleotide exchange factor activity, guanyl-nucleotide exchange factor activity;P:regulation of ARF protein signal transduction;C:intracellular;MFOPBA	O.I.	C.G.	H.G.
10.9	99.2	10.9	At1g10400	837580	UDP-glycosyltransferase/ transferase, transferring glycosyl groups	F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:endomembrane system;PMVBOF	O.I.	C.G.	H.G.
10.9	99.2	9.7	At4g23510	828451	disease resistance protein (TIR class), putative	F:transmembrane receptor activity;P:defense response signaling pathway, resistance gene-dependent, signal transduction, defense response, innate immune response;C:intrinsic to membrane;PBO	O.I.	C.G.	H.G.
10.8	99.2	93.2	At3g25190	822112	nodulin, putative	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPFA	O.I.	C.G.	H.G.
10.8	99.2	66.9	At4g01450	828176	nodulin MtN21 family protein	F:unknown;P:unknown;C:endomembrane system, membrane;PBOM	O.I.	C.G.	H.G.
10.6	99.2	89.5	At5g04740	830352	ACT domain-containing protein	F:amino acid binding;P:metabolic process;C:chloroplast thylakoid membrane, chloroplast stroma, chloroplast;POB	O.I.	C.G.	H.G.
10.6	99.2	22.8	At3g12090	820383	TET6 (TETRASPANIN6)	Member of TETRASPANIN family	O.I.	C.G.	H.G.
10.5	99.2	51.9	At3g06390	819813	integral membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.

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GSM ID	GSM131461
Assay name	AtGen_6-9421_Heatstress(3h)+3hrecovery-Roots-6.0h_Rep1
GSE experiment	GSE5628: AtGenExpress: Stress Treatments (Heat stress)

Microarray experiments to specifically-expressed genes

GSM ID GSM131461 Assay name AtGen_6-9421_Heatstress(3h)+3hrecovery-Roots-6.0h_Rep1 GSE experiment GSE5628: AtGenExpress: Stress Treatments (Heat stress)

GSM ID GSM131461

Assay name AtGen_6-9421_Heatstress(3h)+3hrecovery-Roots-6.0h_Rep1

GSE experiment GSE5628: AtGenExpress: Stress Treatments (Heat stress)