Microarray experiments to specifically-expressed genes

GSM ID GSM131422
Assay name AtGen_6-8225_Woundingstress-Roots-1.0h_Rep2
GSE experiment GSE5627: AtGenExpress: Stress Treatments (Wounding stress)

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
58.799.832.2At5g67430836879GCN5-related N-acetyltransferase (GNAT) family proteinF:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;PBAO.I.C.G.H.G.
53.399.844.0At1g15640838134unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
47.799.8174.9At2g19970816516pathogenesis-related protein, putativeF:molecular_function unknown;P:biological_process unknown;C:extracellular region;MPFBOO.I.C.G.H.G.
42.399.891.6At5g11920831065AtcwINV6 (6-&1-fructan exohydrolase)Encodes a protein with fructan exohydrolase (FEH) activity acting on both inulin and levan-type fructans (1- and 6-FEH). The enzyme does not have invertase activity.O.I.C.G.H.G.
39.799.862.5At5g41280834129-F:molecular_function unknown;P:biological_process unknown;C:anchored to plasma membrane, anchored to membrane;PO.I.C.G.H.G.
39.199.819.0At4g19980827742unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
34.599.734.6At4g14390827084ankyrin repeat family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFBVAO.I.C.G.H.G.
32.899.7188.0At3g43190823393SUS4Encodes a protein with sucrose synthase activity (SUS4).O.I.C.G.H.G.
31.599.79.2At3g50190824181unknown proteinF:unknown;P:biological_process unknown;C:chloroplast;POO.I.C.G.H.G.
31.299.794.9At1g29020839776calcium-binding EF hand family proteinF:calcium ion binding;P:unknown;C:endomembrane system;PMOAFO.I.C.G.H.G.
27.999.716.8At2g47560819369zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVO.I.C.G.H.G.
27.599.757.2At2g29870817537major intrinsic family protein / MIP family proteinF:water channel activity;P:transport;C:membrane;BPMOFAO.I.C.G.H.G.
27.299.756.7At1g51830841610ATP binding / kinase/ protein serine/threonine kinaseF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:cellular_component unknown;PMOBFVAO.I.C.G.H.G.
26.899.7134.0At5g66985836833unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
26.699.740.0At2g29330817482TRI (tropinone reductase)F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAVO.I.C.G.H.G.
24.299.641.9At4g13290826959CYP71A19putative cytochrome P450O.I.C.G.H.G.
24.199.6146.2At1g33055840201unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
24.199.669.3At1g72360843568ethylene-responsive element-binding protein, putativeencodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.O.I.C.G.H.G.
23.999.667.9At2g41480818746electron carrier/ heme binding / peroxidaseF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:unknown;POFBMO.I.C.G.H.G.
23.899.665.6At4g17800827502DNA-binding protein-relatedF:unknown;P:biological_process unknown;C:cellular_component unknown;PBMOFO.I.C.G.H.G.
23.799.627.4At3g47040823857glycosyl hydrolase family 3 proteinF:hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:cellular_component unknown;BOFPAMO.I.C.G.H.G.
22.799.6237.2At4g30140829137GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
22.599.6228.7At4g33070829444pyruvate decarboxylase, putativeF:in 6 functions;P:unknown;C:membrane;BOFPAMVO.I.C.G.H.G.
22.199.644.1At3g10040820165transcription factorF:transcription factor activity;P:regulation of transcription;C:unknown;OMFPBVAO.I.C.G.H.G.
21.799.629.7At5g22890832353zinc finger (C2H2 type) family proteinF:transcription factor activity;P:response to chitin, regulation of transcription;C:intracellular;MOPFO.I.C.G.H.G.
21.099.614.5At3g11390820311DC1 domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBVO.I.C.G.H.G.
20.899.6141.8At5g59520836071ZIP2encodes a metal ion transporter whose expression is regulated by copper.O.I.C.G.H.G.
20.799.616.1At3g47050823858glycosyl hydrolase family 3 proteinF:hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:vacuole;BOFPAMO.I.C.G.H.G.
20.299.623.8At4g31940829324CYP82C4member of CYP82CO.I.C.G.H.G.
19.699.631.1At5g44460834473calcium-binding protein, putativeF:calcium ion binding;P:response to cadmium ion;C:unknown;MPFOBO.I.C.G.H.G.
18.899.545.7At5g22555832318unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
18.799.546.3At4g08780826448peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:vacuole;POFMO.I.C.G.H.G.
18.799.521.0At4g25090828612respiratory burst oxidase, putative / NADPH oxidase, putativeF:in 7 functions;P:oxidation reduction;C:cytosolic ribosome, vacuole;MFPBOAO.I.C.G.H.G.
18.599.5100.8At2g22330816765CYP79B3Encodes a cytochrome P450. Involved in tryptophan metabolism. Converts Trp to indole-3-acetaldoxime (IAOx), a precursor to IAA and indole glucosinolates.O.I.C.G.H.G.
18.299.523.5At1g44050841006DC1 domain-containing proteinF:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMOO.I.C.G.H.G.
17.499.5353.2At1g11580837701PMEPCRA (METHYLESTERASE PCR A)F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plasma membrane, plant-type cell wall;PBFMOO.I.C.G.H.G.
16.699.514.8At1g59730842266ATH7 (thioredoxin H-type 7)F:unknown;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;BOMPFAVO.I.C.G.H.G.
16.599.517.5At4g11880826795AGL14 (agamous-like 14)AGL12, AGL14, and AGL17 are all preferentially expressed in root tissues and therefore represent the only characterized MADS box genes expressed in roots.O.I.C.G.H.G.
16.499.5254.1At2g26400817180ATARD3 (ACIREDUCTONE DIOXYGENASE 3)Encodes a protein predicted to belong to the acireductone dioxygenase (ARD/ARDí)family.O.I.C.G.H.G.
16.499.5233.2At1g32450840139NRT1.5 (NITRATE TRANSPORTER 1.5)Transmembrane nitrate transporter. Involved in xylem transport of nitrate from root to shoot. Induced in response to nitrate. Not involved in nitrate uptake. expressed in root pericycle cells.O.I.C.G.H.G.
16.499.59.0At1g48510841272cytochrome c oxidase assembly protein surfeit-relatedF:molecular_function unknown;P:biological_process unknown;C:unknown;OMFPBO.I.C.G.H.G.
16.399.5105.3At5g15120831364unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOO.I.C.G.H.G.
16.199.577.1At5g65640836690bHLH093 (beta HLH protein 93)F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFOO.I.C.G.H.G.
16.199.535.4At2g18360816351hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:unknown;C:endomembrane system;BOMPFAO.I.C.G.H.G.
16.099.5158.6At5g45510834587leucine-rich repeat family proteinF:protein binding;P:unknown;C:cytosol;MOPBFVAO.I.C.G.H.G.
16.099.58.8At3g12220820402scpl16 (serine carboxypeptidase-like 16)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBOO.I.C.G.H.G.
15.899.513.0At5g39970833994catalyticF:catalytic activity;P:biological_process unknown;C:anchored to membrane;OBPMAFO.I.C.G.H.G.
15.699.552.4At3g59220825091PRN (PIRIN)encodes a cupin-domain containing protein that is similar to pirins which interact with a CCAAT box binding transcription factor. The protein interacts with GPA1 (G protein alpha-subunit) in vitro. Mutants in the gene are affected in germination and early seedling development.O.I.C.G.H.G.
15.699.522.7At5g48175834870unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
15.599.554.5At5g60890836210MYB34 (MYB DOMAIN PROTEIN 34)Myb-like transcription factor that modulates expression of ASA1, a key point of control in the tryptophan pathway; mutant has deregulated expression of ASA1 in dominant allele. Loss of function allele suggests ATR1 also functions at a control point for regulating indole glucosinolate homeostasis.O.I.C.G.H.G.
15.199.434.1At3g27220822341kelch repeat-containing proteinF:unknown;P:biological_process unknown;C:Golgi apparatus;MBOVPFAO.I.C.G.H.G.
15.199.414.9At4g15380827204CYP705A4member of CYP705AO.I.C.G.H.G.
15.099.415.2At3g60470825218unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
15.099.48.5At1g53990841837GLIP3Contains lipase signature motif and GDSL domain.O.I.C.G.H.G.
14.999.439.2At4g31730829301GDU1 (GLUTAMINE DUMPER 1)Glutamine dumper1 is a putative transmembrane protein. It is involved in glutamine secretionO.I.C.G.H.G.
14.899.446.4At3g14280820648unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
14.699.426.9At1g10990837642unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
14.599.4204.9At2g43590818961chitinase, putativeF:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBFOMVO.I.C.G.H.G.
14.599.424.4At1g24320839048alpha-glucosidase, putativeF:mannosyl-oligosaccharide glucosidase activity, alpha-glucosidase activity, catalytic activity;P:oligosaccharide metabolic process;C:cellular_component unknown;MFOBPAO.I.C.G.H.G.
14.399.424.1At1g35260840415MLP165 (MLP-LIKE PROTEIN 165)F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;PO.I.C.G.H.G.
14.199.4141.7At5g37740833752C2 domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MPFOO.I.C.G.H.G.
14.199.434.5At4g05200825868protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
14.199.423.7At2g28780817427unknown proteinF:unknown;P:biological_process unknown;C:mitochondrion;BPOO.I.C.G.H.G.
14.099.4225.7At3g54040824571photoassimilate-responsive protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
14.099.4108.1At3g62040825377catalytic/ hydrolaseF:hydrolase activity, catalytic activity;P:metabolic process;C:unknown;OBPFAO.I.C.G.H.G.
13.999.481.9At3g23190821897lesion inducing protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;PO.I.C.G.H.G.
13.799.425.7At5g092908307883'(2'),5'-bisphosphate nucleotidase, putative / inositol polyphosphate 1-phosphatase, putativeF:3'(2'),5'-bisphosphate nucleotidase activity, inositol or phosphatidylinositol phosphatase activity;P:sulfur metabolic process;C:unknown;BOMFPAO.I.C.G.H.G.
13.699.4106.5At5g45500834586unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOBO.I.C.G.H.G.
13.699.438.2At2g46740819287FAD-binding domain-containing proteinF:oxidoreductase activity, D-arabinono-1,4-lactone oxidase activity, FAD binding, catalytic activity;P:unknown;C:cell wall;BOFPMAO.I.C.G.H.G.
13.499.441.9At3g44540823579FAR4 (FATTY ACID REDUCTASE 4)F:oxidoreductase activity, acting on the CH-CH group of donors, binding, catalytic activity;P:microsporogenesis, metabolic process;C:cellular_component unknown;MBPOFO.I.C.G.H.G.
13.499.423.8At5g48940834952leucine-rich repeat transmembrane protein kinase, putativeF:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:unknown;MPOBFVAO.I.C.G.H.G.
13.399.436.0At3g12230820403scpl14 (serine carboxypeptidase-like 14)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOBO.I.C.G.H.G.
13.299.4293.0At5g01870831705lipid transfer protein, putativePredicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.O.I.C.G.H.G.
13.299.4135.1At3g02550821112LBD41 (LOB DOMAIN-CONTAINING PROTEIN 41)F:unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
13.299.430.1At1g52140841644unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
13.199.4142.4At4g39950830154CYP79B2Belongs to cytochrome P450 and is involved in tryptophan metabolism. Converts Trp to indo-3-acetaldoxime (IAOx), a precursor to IAA and indole glucosinolates.O.I.C.G.H.G.
13.199.425.0At3g13760820585DC1 domain-containing proteinF:protein binding, zinc ion binding;P:unknown;C:membrane;PMOO.I.C.G.H.G.
12.999.373.6At5g39890833986unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOO.I.C.G.H.G.
12.999.323.7At1g12160837768flavin-containing monooxygenase family protein / FMO family proteinF:NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity;P:biological_process unknown;C:cellular_component unknown;BOMFPAO.I.C.G.H.G.
12.799.372.4At4g01450828176nodulin MtN21 family proteinF:unknown;P:unknown;C:endomembrane system, membrane;PBOMO.I.C.G.H.G.
12.799.372.2At5g50760835148auxin-responsive family proteinF:molecular_function unknown;P:response to auxin stimulus;C:unknown;POO.I.C.G.H.G.
12.799.330.5At1g01190839233CYP78A8member of CYP78AO.I.C.G.H.G.
12.799.323.3At5g52710835348heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:cellular_component unknown;OMFBPVAO.I.C.G.H.G.
12.699.323.3At2g308408176352-oxoglutarate-dependent dioxygenase, putativeencodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenaseO.I.C.G.H.G.
12.599.35.9At5g02350831920DC1 domain-containing proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOO.I.C.G.H.G.
12.499.358.9At5g63660836486PDF2.5Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.O.I.C.G.H.G.
12.399.358.1At2g46750819288FAD-binding domain-containing proteinF:oxidoreductase activity, D-arabinono-1,4-lactone oxidase activity, FAD binding, catalytic activity;P:unknown;C:membrane;BOPFMAO.I.C.G.H.G.
12.399.328.7At5g10210830885-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
12.299.397.8At2g18980816415peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBMO.I.C.G.H.G.
12.099.330.4At4g22780828377ACR7Member of a family of ACT domain containing proteins . ACT domains are involved in amino acid binding .O.I.C.G.H.G.
12.099.328.0At2g45920819200U-box domain-containing proteinF:ubiquitin-protein ligase activity;P:protein ubiquitination;C:ubiquitin ligase complex;POMFBAVO.I.C.G.H.G.
11.999.3135.8At5g23020832366IMS2 (2-ISOPROPYLMALATE SYNTHASE 2)methylthioalkymalate synthase-like. Also known as 2-isopropylmalate synthase (IMS2). encodes a methylthioalkylmalate synthase involved in the biosynthesis of aliphatic glucosinolates which accepts all the omega-methylthio-2-oxoalkanoic acids needed to form the known C3 to C8 glucosinolates in Arabidopsis.O.I.C.G.H.G.
11.999.329.0At5g18860832004inosine-uridine preferring nucleoside hydrolase family proteinF:hydrolase activity;P:biological_process unknown;C:cell wall;BOMPFAO.I.C.G.H.G.
11.999.322.7At5g54040835487DC1 domain-containing proteinF:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMOFO.I.C.G.H.G.
11.899.365.7At2g19990816518PR-1-LIKE (PATHOGENESIS-RELATED PROTEIN-1-LIKE)Encodes a PR-1-like protein homolog that is differentially expressed in resistant compared to susceptible cultivars by powdery mildew infection. The deduced amino acid sequence has 24 amino acids comprising the signal peptide and 140 amino acids of the mature peptide (15 kDa). Northern blot analysis showed accumulation of the corresponding mRNA 12 h after inoculation of resistant barley cultivars with Erysiphe graminis. Though the Genbank record for the cDNA associated to this gene model is called 'PR-1', the sequence actually corresponds to PR-1-like. Expression of this gene is not salicylic-acid responsive.O.I.C.G.H.G.
11.699.311.9At3g26550822263DC1 domain-containing proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOO.I.C.G.H.G.
11.599.3132.8At5g26280832697meprin and TRAF homology domain-containing protein / MATH domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:membrane;PFOMO.I.C.G.H.G.
11.499.351.1At3g26470822252-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
11.499.334.7At2g39380818523ATEXO70H2 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN H2)A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.O.I.C.G.H.G.
11.499.324.9At2g28570817405unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.



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