Microarray experiments to specifically-expressed genes

GSM ID GSM131415
Assay name AtGen_6-8111_Woundingstress-Shoots-0.5h_Rep1
GSE experiment GSE5627: AtGenExpress: Stress Treatments (Wounding stress)

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
72.499.940.6At5g63770836497ATDGK2 (Diacylglycerol kinase 2)a member of the diacylglycerol kinase gene family. Encodes a functional diacylglycerol kinase. Involved in root elongation and plant development. Gene expression is induced by wounding or cold.O.I.C.G.H.G. (DWARF AND DELAYED FLOWERING 2)encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (DDF2). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. Overexpression of this gene results in the reduction of gibberellic acid biosynthesis. This gene is expressed in all tissues examined, but most abundantly expressed in rosette leaves and stems. Overexpression of DDF1, a putative paralog of this gene, also reduces gibberellic acid biosynthesis and makes the plants more tolerant to high-salinity levels.O.I.C.G.H.G.
51.199.847.4At1g12610837817DDF1 (DWARF AND DELAYED FLOWERING 1)Encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (DDF1). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. Overexpression of this gene results in delayed flowering and dwarfism, reduction of gibberellic acid biosynthesis, and increased tolerance to high levels of salt. This gene is expressed in all tissues examined, but most abundantly expressed in upper stems. Overexpression of this gene is also correlated with increased expression of GA biosynthetic genes and RD29A (a cold and drought responsive gene). Under salt stress it induces the expression of GAOX7, which encodes ad C20-GA inhibitor.O.I.C.G.H.G.
36.899.744.4At1g11960837748-F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;FPMOBO.I.C.G.H.G.
32.499.739.1At5g58120835924disease resistance protein (TIR-NBS-LRR class), putativeF:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAO.I.C.G.H.G.
27.199.759.7At3g44630823589disease resistance protein RPP1-WsB-like (TIR-NBS-LRR class), putativeF:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:N-terminal protein myristoylation, defense response;C:intrinsic to membrane;PMBOFAVO.I.C.G.H.G.
23.999.6107.2At2g27690817315CYP94C1Encodes a CYP94C1. Has highest omega-hydroxylase activity with 9,10-epoxystearic acid, while also metabolized lauric acid (C12:0) and C18 unsaturated fatty acids. Gene expression is induced in response to wounding and jasmonic acid treatment.O.I.C.G.H.G.
23.999.679.5At5g64850836608unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PO.I.C.G.H.G.
23.899.671.2At5g62570836377calmodulin-binding proteinF:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
22.399.640.9At1g56510842104WRR4 (WHITE RUST RESISTANCE 4)TIR-NB-LRR protein that confers resistance to four races of Albugo candida.O.I.C.G.H.G.
21.299.662.8At1g02660839544lipase class 3 family proteinF:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;MOFPBVO.I.C.G.H.G.
19.899.627.7At5g38700833860unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PO.I.C.G.H.G.
19.199.643.0At1g78280844163transferase, transferring glycosyl groupsF:transferase activity, transferring glycosyl groups;P:cell surface receptor linked signal transduction;C:cellular_component unknown;MBOFPO.I.C.G.H.G.
17.499.565.0At5g66210836753CPK28member of Calcium Dependent Protein KinaseO.I.C.G.H.G.
16.499.526.4At2g17660816273nitrate-responsive NOI protein, putativeF:molecular_function unknown;P:response to nitrate;C:cellular_component unknown;POO.I.C.G.H.G.
15.599.599.0At1g74450843786unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
15.499.549.8At1g35350840424-F:unknown;P:unknown;C:integral to membrane;FMPOBO.I.C.G.H.G.
15.099.473.0At2g34600818025JAZ7 (JASMONATE-ZIM-DOMAIN PROTEIN 7)F:molecular_function unknown;P:response to jasmonic acid stimulus, response to chitin;C:cellular_component unknown;PO.I.C.G.H.G.
14.999.477.9At2g24600816996ankyrin repeat family proteinF:protein binding;P:biological_process unknown;C:cellular_component unknown;MOPBFVAO.I.C.G.H.G.
14.099.463.1At5g62520836372SRO5 (SIMILAR TO RCD ONE 5)Encodes a protein with similarity to RCD1 but without the WWE domain. The protein does have a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation. Up-regulated by NaCl. SRO5 and P5CDH (an overlapping gene in the antisense orientation) generate 24-nt and 21-nt siRNAs, which together are components of a regulatory loop controlling reactive oxygen species (ROS) production and stress response.O.I.C.G.H.G.
13.799.425.4At1g56660842121unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVAO.I.C.G.H.G.
13.399.444.4At1g29430839819auxin-responsive family proteinF:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO.I.C.G.H.G.
13.099.451.7At2g34930818058disease resistance family proteinF:protein binding;P:signal transduction, defense response to fungus, defense response;C:cell wall;PMOBFAVO.I.C.G.H.G.
13.099.432.2At3g16860820941COBL8 (COBRA-LIKE PROTEIN 8 PRECURSOR)F:unknown;P:biological_process unknown;C:anchored to membrane;PO.I.C.G.H.G.
12.999.3177.7At1g65490842861unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
12.099.3111.0At4g23180828417CRK10 (CYSTEINE-RICH RLK10)Encodes a receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307)O.I.C.G.H.G.
12.099.312.4At5g52020835277AP2 domain-containing proteinencodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.O.I.C.G.H.G.
11.999.322.8At3g49160824077pyruvate kinase family proteinExpression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress.O.I.C.G.H.G.
11.999.315.0At5g1620083147850S ribosomal protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
11.699.313.9At1g24330839049armadillo/beta-catenin repeat family protein / U-box domain-containing family proteinF:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:chloroplast;PMOFBVO.I.C.G.H.G.
11.199.2171.0At2g06050815160OPR3 (OPDA-REDUCTASE 3)Encodes a 12-oxophytodienoate reductase that is required for jasmonate biosynthesis. Mutants are male sterile and defective in pollen dehiscence.O.I.C.G.H.G.
10.999.2137.0At3g16670820919unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:endomembrane system;PO.I.C.G.H.G.
10.999.282.1At1g15010838066unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PBO.I.C.G.H.G.
10.499.287.9At3g54500824615-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBO.I.C.G.H.G. (LON PROTEASE 2)Encodes a member of the Lon protease-like proteins (Lon1/At5g26860, Lon2/At5g47040, Lon3/At3g05780, Lon4/At3g05790). Lon is a multifunctional ATP-dependent protease which exists in bacteria, archaea and within organelles in eukaryotic cells. Lon proteases are responsible for the degradation of abnormal, damaged and unstable proteins.O.I.C.G.H.G. proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVO.I.C.G.H.G.
9.999.188.4At1g01140839349CIPK9 (CBL-INTERACTING PROTEIN KINASE 9)Encodes a CBL-interacting protein kinase with similarity to SOS2O.I.C.G.H.G.
9.899.111.3At4g19510827692disease resistance protein (TIR-NBS-LRR class), putativeF:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMOBFAO.I.C.G.H.G.
9.799.113.8At3g15310820762transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
9.699.1157.6At3g55430824709glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putativeF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall;PFOBO.I.C.G.H.G.
9.699.166.7At1g07180837229NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1)Internal NAD(P)H dehydrogenase in mitochondria. The predicted protein sequence has high homology with other designated NAD(P)H DHs from microorganisms; the capacity for matrix NAD(P)H oxidation via the rotenone-insensitive pathway is significantly reduced in the Atndi1 mutant plant line; the in vitro translation product of AtNDI1 is imported into isolated mitochondria and located on the inside of the inner membrane.O.I.C.G.H.G.
9.599.167.7At1g17380838310JAZ5 (JASMONATE-ZIM-DOMAIN PROTEIN 5)F:molecular_function unknown;P:response to jasmonic acid stimulus;C:cellular_component unknown;PO.I.C.G.H.G.
9.399.190.0At3g48520824011CYP94B3member of CYP94BO.I.C.G.H.G.
9.399.146.1At4g17615827481CBL1 (CALCINEURIN B-LIKE PROTEIN 1)Member of AtCBL (Calcineurin B-like Calcium Sensor Proteins) family. Protein level is increased upon high salt, mannitol, and cold stresses. CBL1 interacts with CIPK23 and recruits the kinase to the plasma membrane where the substrate(s) of CIPK23 may reside. CBL1 localization is regulated by protein modification including myristolation and acylation.O.I.C.G.H.G.
9.099.1180.6At3g17800821048-mRNA level of the MEB5.2 gene (At3g17800) remains unchanged after cutting the inflorescence stemO.I.C.G.H.G.
8.899.071.9At1g1799083837912-oxophytodienoate reductase, putativeF:unknown;P:unknown;C:unknown;BOFPAMO.I.C.G.H.G.
8.799.0162.5At4g34150829563C2 domain-containing proteinF:unknown;P:response to cold;C:unknown;MPFOBVAO.I.C.G.H.G.
8.799.053.0At5g53050835385hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:unknown;C:unknown;BOMPFAVO.I.C.G.H.G.

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