Microarray experiments to specifically-expressed genes

GSM ID GSM131402
Assay name AtGen_6-7422_UV-Bstress-Roots-6.0h_Rep2
GSE experiment GSE5626: AtGenExpress: Stress Treatments (UV-B stress)

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
82.699.977.9At1g01190839233CYP78A8member of CYP78AO.I.C.G.H.G.
51.499.878.0At1g51830841610ATP binding / kinase/ protein serine/threonine kinaseF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:cellular_component unknown;PMOBFVAO.I.C.G.H.G.
37.299.760.2At2g23030816833SNRK2.9 (SNF1-RELATED PROTEIN KINASE 2.9)encodes a member of SNF1-related protein kinases (SnRK2)O.I.C.G.H.G.
33.999.736.7At2g28780817427unknown proteinF:unknown;P:biological_process unknown;C:mitochondrion;BPOO.I.C.G.H.G.
31.399.735.6At5g22890832353zinc finger (C2H2 type) family proteinF:transcription factor activity;P:response to chitin, regulation of transcription;C:intracellular;MOPFO.I.C.G.H.G.
29.499.711.9At1g53990841837GLIP3Contains lipase signature motif and GDSL domain.O.I.C.G.H.G.
28.799.7154.8At3g62040825377catalytic/ hydrolaseF:hydrolase activity, catalytic activity;P:metabolic process;C:unknown;OBPFAO.I.C.G.H.G.
23.999.6281.5At1g32450840139NRT1.5 (NITRATE TRANSPORTER 1.5)Transmembrane nitrate transporter. Involved in xylem transport of nitrate from root to shoot. Induced in response to nitrate. Not involved in nitrate uptake. expressed in root pericycle cells.O.I.C.G.H.G.
23.799.620.9At1g07260837237UGT71C3 (UDP-GLUCOSYL TRANSFERASE 71C3)F:quercetin 3-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOFO.I.C.G.H.G.
23.199.640.7At1g02220839476ANAC003 (Arabidopsis NAC domain containing protein 3)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PFO.I.C.G.H.G.
22.799.636.9At2g29330817482TRI (tropinone reductase)F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAVO.I.C.G.H.G.
22.599.636.7At2g25590817098agenet domain-containing proteinF:RNA binding;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
22.599.619.9At5g67430836879GCN5-related N-acetyltransferase (GNAT) family proteinF:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;PBAO.I.C.G.H.G.
21.799.625.8At5g595308360722-oxoglutarate-dependent dioxygenase, putativeF:transferase activity, transferring glycosyl groups;P:unknown;C:unknown;POBFMO.I.C.G.H.G.
21.399.6113.9At5g65210836646TGA1F:transcription factor activity, calmodulin binding, DNA binding;P:defense response to bacterium;C:nucleus;POMO.I.C.G.H.G.
20.599.623.3At5g06740830563lectin protein kinase family proteinF:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
20.499.6128.3At3g25190822112nodulin, putativeF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPFAO.I.C.G.H.G.
20.399.698.2At2g40080818596ELF4 (EARLY FLOWERING 4)Encodes a novel nuclear 111 amino-acid phytochrome-regulated component of a negative feedback loop involving the circadian clock central oscillator components CCA1 and LHY. ELF4 is necessary for light-induced expression of both CCA1 and LHY, and conversely, CCA1 and LHY act negatively on light-induced ELF4 expression. ELF4 promotes clock accuracy and is required for sustained rhythms in the absence of daily light/dark cycles. It is involved in the phyB-mediated constant red light induced seedling de-etiolation process and may function to coregulate the expression of a subset of phyB-regulated genes.O.I.C.G.H.G.
20.399.613.5At4g04990825841unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPOFBVO.I.C.G.H.G.
20.199.614.7At5g39970833994catalyticF:catalytic activity;P:biological_process unknown;C:anchored to membrane;OBPMAFO.I.C.G.H.G.
19.999.6186.1At1g80830844422NRAMP1 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 1)Thought to be involved in iron homeostasis. Induced in leaves in response to iron deficiency. Transgenic plants accumulate toxic levels of iron. Gene complements yeast iron uptake mutants.O.I.C.G.H.G.
19.599.637.3At1g31050839991transcription factorF:transcription factor activity;P:regulation of transcription;C:nucleus;PO.I.C.G.H.G.
18.999.532.1At2g28570817405unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
18.599.511.6At1g31060839992unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
18.399.5102.7At1g22440838850alcohol dehydrogenase, putativeF:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:oxidation reduction, metabolic process;C:cellular_component unknown;BOPFMAVO.I.C.G.H.G.
17.999.528.0At1g12160837768flavin-containing monooxygenase family protein / FMO family proteinF:NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity;P:biological_process unknown;C:cellular_component unknown;BOMFPAO.I.C.G.H.G.
17.099.596.2At3g23430821924PHO1 (phosphate 1)mutant is deficient in the transfer of phosphate from root epidermal and cortical cells to the xylem. encodes protein with the mainly hydrophilic N-terminal and the C-terminal containing 6 potential membrane-spanning domains.O.I.C.G.H.G.
16.899.526.9At2g308408176352-oxoglutarate-dependent dioxygenase, putativeencodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenaseO.I.C.G.H.G.
16.699.526.5At5g48940834952leucine-rich repeat transmembrane protein kinase, putativeF:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:unknown;MPOBFVAO.I.C.G.H.G.
16.599.591.6At2g33770817943PHO2 (PHOSPHATE 2)Encodes a ubiquitin-conjugating E2 enzyme. UBC24 mRNA accumulation is suppressed by miR399f, miR399b and miR399c. Involved in phosphate starvation response.O.I.C.G.H.G.
16.499.519.4At3g45410823679lectin protein kinase family proteinencodes a receptor-like kinase that has serine/threonine kinase activity whose expression is induced by high salt stress. This induction is inhibited by tobacco ethylene receptor.O.I.C.G.H.G.
16.499.517.4At4g11880826795AGL14 (agamous-like 14)AGL12, AGL14, and AGL17 are all preferentially expressed in root tissues and therefore represent the only characterized MADS box genes expressed in roots.O.I.C.G.H.G.
16.199.511.0At3g476752745949unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
15.899.580.8At4g01450828176nodulin MtN21 family proteinF:unknown;P:unknown;C:endomembrane system, membrane;PBOMO.I.C.G.H.G.
15.599.537.2At3g14680820696CYP72A14putative cytochrome P450O.I.C.G.H.G.
15.499.560.4At5g43180834336unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBOO.I.C.G.H.G.
14.999.421.0At5g49770835040leucine-rich repeat transmembrane protein kinase, putativeF:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
14.599.492.7At2g23540816886GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOMO.I.C.G.H.G.
14.499.414.6At4g15380827204CYP705A4member of CYP705AO.I.C.G.H.G.
14.299.476.5At5g50760835148auxin-responsive family proteinF:molecular_function unknown;P:response to auxin stimulus;C:unknown;POO.I.C.G.H.G.
14.299.413.8At3g60490825220AP2 domain-containing transcription factor TINY, putativeencodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.O.I.C.G.H.G.
14.199.4160.6At4g39675830122unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
14.199.486.8At5g20960832221AAO1 (ARABIDOPSIS ALDEHYDE OXIDASE 1)Encodes aldehyde oxidase AA01.O.I.C.G.H.G.
14.199.421.4At1g07560837270leucine-rich repeat protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
13.899.4224.0At3g54040824571photoassimilate-responsive protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
13.699.429.6At4g13030826917unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;BPMFOO.I.C.G.H.G.
13.599.429.8At2g45920819200U-box domain-containing proteinF:ubiquitin-protein ligase activity;P:protein ubiquitination;C:ubiquitin ligase complex;POMFBAVO.I.C.G.H.G.
13.399.4175.1At1g19530838540unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PO.I.C.G.H.G.
13.399.433.5At4g05200825868protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
13.399.431.4At2g35380818105peroxidase 20 (PER20) (P20)F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBO.I.C.G.H.G.
13.399.425.5At3g12090820383TET6 (TETRASPANIN6)Member of TETRASPANIN familyO.I.C.G.H.G.
13.199.417.2At4g13280826958TPS12 (TERPENOID SYNTHASE 12)Catalyzes the conversion of farnesyl diphosphate to (Z)-gamma-bisabolene and the additional minor products E-nerolidol and alpha-bisabolol. Expressed in cortex and sub-epidermal layers of roots, leaf hydathodes and flower stigmata. Induced by wounding.O.I.C.G.H.G.
13.199.411.2At1g67710843096ARR11 (RESPONSE REGULATOR 11)Encodes an Arabidopsis response regulator (ARR) protein that acts in concert with other type-B ARRs in the cytokinin signaling pathway.O.I.C.G.H.G.
13.099.493.1At4g08770826447peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:vacuole;POFO.I.C.G.H.G.
13.099.424.8At3g13760820585DC1 domain-containing proteinF:protein binding, zinc ion binding;P:unknown;C:membrane;PMOO.I.C.G.H.G.
13.099.417.5At2g45830819191DTA2 (DOWNSTREAM TARGET OF AGL15 2)F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFOVBO.I.C.G.H.G.
12.999.316.9At2g28960817445leucine-rich repeat protein kinase, putativeF:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
12.599.3133.1At5g37740833752C2 domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MPFOO.I.C.G.H.G.
12.499.321.7At4g28890829010protein binding / ubiquitin-protein ligase/ zinc ion bindingF:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVBO.I.C.G.H.G.
12.399.321.2At3g27150822334kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBVFAO.I.C.G.H.G.
12.399.318.5At3g05360819700AtRLP30 (Receptor Like Protein 30)F:protein binding, kinase activity;P:defense response signaling pathway, resistance gene-independent, response to cyclopentenone, signal transduction, defense response;C:endomembrane system;PMOBFAVO.I.C.G.H.G.
12.299.320.6At5g45080834539AtPP2-A6 (Phloem protein 2-A6)F:carbohydrate binding;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PO.I.C.G.H.G.
12.299.313.9At3g55910824757unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
12.199.388.0At1g120108377531-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putativeencodes a protein whose sequence is similar to 1-amino-cyclopropane-1-carboxylic acid oxidaseO.I.C.G.H.G.
12.199.368.7At2g30500817600kinase interacting family proteinF:unknown;P:unknown;C:unknown;MOBFPAVO.I.C.G.H.G.
12.199.339.7At3g44540823579FAR4 (FATTY ACID REDUCTASE 4)F:oxidoreductase activity, acting on the CH-CH group of donors, binding, catalytic activity;P:microsporogenesis, metabolic process;C:cellular_component unknown;MBPOFO.I.C.G.H.G.
12.099.358.0At5g63660836486PDF2.5Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.O.I.C.G.H.G.
12.099.328.2At2g21560816695unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBVO.I.C.G.H.G.
11.899.315.1At5g52790835356CBS domain-containing protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BOMFPAO.I.C.G.H.G.
11.899.314.5At1g13670837928unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
11.799.362.1At5g08240830720unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO.I.C.G.H.G.
11.799.360.5At2g19110816428HMA4Encodes a protein with similarity to Zn ATPase. Can rescue Zn deficiency in yeast and Cd resistance, suggesting a role in Zn and Cd transport.O.I.C.G.H.G.
11.699.3201.6At3g01420821135DOX1Encodes an alpha-dioxygenase involved in protection against oxidative stress and cell death. Induced in response to Salicylic acid and oxidative stress. Independent of NPR1 in induction by salicylic acid.O.I.C.G.H.G.
11.699.3192.8At5g63600836480FLS5 (FLAVONOL SYNTHASE 5)encodes a protein whose sequence is similar to flavonol synthaseO.I.C.G.H.G.
11.699.311.3At2g39410818526hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:unknown;C:unknown;BPOMVAO.I.C.G.H.G.
11.399.37.7At5g53990835482glycosyltransferase family proteinF:transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBOFVO.I.C.G.H.G.
11.099.216.5At1g36640840572unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
11.099.213.5At3g29780822684RALFL27 (ralf-like 27)Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.O.I.C.G.H.G.
10.999.2132.1At1g15380838107lactoylglutathione lyase family protein / glyoxalase I family proteinF:lactoylglutathione lyase activity;P:carbohydrate metabolic process;C:cellular_component unknown;BPOMFAO.I.C.G.H.G.
10.999.281.8At1g64590842767short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAO.I.C.G.H.G.
10.999.271.5At4g20110827757vacuolar sorting receptor, putativeF:calcium ion binding;P:intracellular protein transport, N-terminal protein myristoylation, protein targeting to vacuole;C:trans-Golgi network, integral to plasma membrane, Golgi transport complex, membrane;MOPBFAO.I.C.G.H.G.
10.999.26.8At2g37820818359DC1 domain-containing proteinF:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;PMOFO.I.C.G.H.G.
10.899.212.2At1g51840841611protein kinase-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
10.699.2101.4At5g59520836071ZIP2encodes a metal ion transporter whose expression is regulated by copper.O.I.C.G.H.G.
10.599.29.5At4g23510828451disease resistance protein (TIR class), putativeF:transmembrane receptor activity;P:defense response signaling pathway, resistance gene-dependent, signal transduction, defense response, innate immune response;C:intrinsic to membrane;PBOO.I.C.G.H.G.
10.499.2100.8At2g36290818200hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:biological_process unknown;C:endoplasmic reticulum;BPOFAO.I.C.G.H.G.
10.499.255.3At1g30270839907CIPK23 (CBL-INTERACTING PROTEIN KINASE 23)Arabidopsis thaliana CBL-interacting protein kinase 23. CIPK23 serves as a positive regulator of the potassium transporter AKT1 by directly phosphorylates AKT1. CIPK23 is activated by the binding of two calcineurin B-like proteins, CBL1 and CBL9.O.I.C.G.H.G.
10.499.253.4At2g46750819288FAD-binding domain-containing proteinF:oxidoreductase activity, D-arabinono-1,4-lactone oxidase activity, FAD binding, catalytic activity;P:unknown;C:membrane;BOPFMAO.I.C.G.H.G.
10.499.240.6At1g60680842362aldo/keto reductase family proteinF:oxidoreductase activity, aldo-keto reductase activity;P:oxidation reduction;C:unknown;BOMFPAO.I.C.G.H.G.
10.399.228.8At1g60610842355protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOVFO.I.C.G.H.G.
10.299.2125.2At5g26280832697meprin and TRAF homology domain-containing protein / MATH domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:membrane;PFOMO.I.C.G.H.G.
10.299.287.5At5g04740830352ACT domain-containing proteinF:amino acid binding;P:metabolic process;C:chloroplast thylakoid membrane, chloroplast stroma, chloroplast;POBO.I.C.G.H.G.
10.299.258.9At2g44010819006unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
10.299.249.0At3g29035822547ATNAC3 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 3)Encodes a protein with transcription factor activity. Note: this protein (AT3G29035) on occasion has also been referred to as AtNAC3, not to be confused with the AtNAC3 found at locus AT3G15500.O.I.C.G.H.G.
10.299.213.8At2g26820817223ATPP2-A3 (Phloem protein 2-A3)F:carbohydrate binding;P:response to bacterium;C:unknown;MOBPFVAO.I.C.G.H.G.
10.199.210.4At3g30350822736unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
10.099.288.2At5g44790834509RAN1 (RESPONSIVE-TO-ANTAGONIST 1)ATP dependent copper transporter vital for ethylene response pathwayO.I.C.G.H.G.
10.099.269.2At1g29280839802WRKY65member of WRKY Transcription Factor; Group II-eO.I.C.G.H.G.
10.099.254.6At1g77920844127bZIP family transcription factorF:transcription factor activity, calmodulin binding;P:defense response to bacterium;C:nucleus;POFMBO.I.C.G.H.G.
10.099.254.4At3g25930822190universal stress protein (USP) family proteinF:molecular_function unknown;P:response to stress;C:cellular_component unknown;PO.I.C.G.H.G.



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