Microarray experiments to specifically-expressed genes

GSM ID GSM131397
Assay name AtGen_6-7321_UV-Bstress-Roots-3.0h_Rep1
GSE experiment GSE5626: AtGenExpress: Stress Treatments (UV-B stress)

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
100.899.950.8At2g22590816790transferase, transferring glycosyl groupsF:transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBFOVO.I.C.G.H.G.
43.099.8112.3At5g17010831564sugar transporter family proteinF:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:plasma membrane, membrane;BFMOPAVO.I.C.G.H.G.
39.599.8119.3At1g06550837166enoyl-CoA hydratase/isomerase family proteinF:3-hydroxyisobutyryl-CoA hydrolase activity, catalytic activity;P:fatty acid beta-oxidation, metabolic process;C:cellular_component unknown;BOMFPAO.I.C.G.H.G.
39.599.825.0At4g15480827220UGT84A1Encodes a protein that might have sinapic acid:UDP-glucose glucosyltransferase activity.O.I.C.G.H.G.
28.599.761.3At4g36610829813hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:biological_process unknown;C:endomembrane system;BOMPFAO.I.C.G.H.G.
27.599.740.6At2g29330817482TRI (tropinone reductase)F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAVO.I.C.G.H.G.
27.099.743.3At2g47460819359MYB12 (MYB DOMAIN PROTEIN 12)"MYB12 belongs to subgroup 7 of the R2R3-MYB family. It strongly activates the promoters of chalcone synthase (CHS), flavanone 3-hydroxylase (F3H), flavonol synthase (FLS) and - to a lesser extent - chalcone flavanone isomerase (CHI), but cannot activate the promoters of flavonoid-3'hydroxylase (F3'H) and dihydroflavonol 4-reductase (DF). The activation requires a functional MYB recognition element (MRE). Results from the myb12-1f allele indicate that an activation domain might be present in the C-terminus. Overexpression or knock-out plants do not show any obvious phenotype under greenhouse conditions. Young myb12-ko seedlings contain reduced amounts of flavonoids (quercetin and kaempferol), while seedlings as well as leaves of MYB12-OX plants displayed an increased flavonoid content. They did not show any significant difference in anthocyanin content. Expression of CHS and FLS shows a clear correlation to MYB12 expression levels. CHI and F3H show increased transcript levels in the MYB12-OX lines, but no differences in the knock-out. Even in the absence of functional MYB12, flavonol biosynthesis is not completely absent, suggesting functional redundancy. " The redundant factors are MYB11 and MYB111 although MYB12 is primarily required for flavonol biosynthesis in roots.O.I.C.G.H.G.
26.499.773.9At5g09520830811hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMPOFVAO.I.C.G.H.G.
25.199.6206.9At5g08640830765FLS (FLAVONOL SYNTHASE)Encodes a flavonol synthase that catalyzes formation of flavonols from dihydroflavonols.O.I.C.G.H.G.
24.999.6113.9At5g05270830409chalcone-flavanone isomerase family proteinF:chalcone isomerase activity;P:flavonoid biosynthetic process;C:cellular_component unknown;PO.I.C.G.H.G.
24.999.675.7At2g23910816923cinnamoyl-CoA reductase-relatedF:coenzyme binding, binding, cinnamoyl-CoA reductase activity, catalytic activity;P:lignin biosynthetic process, cellular metabolic process, metabolic process;C:cellular_component unknown;POBFMO.I.C.G.H.G.
24.799.6176.4At5g48880834946PKT2 (PEROXISOMAL 3-KETO-ACYL-COA THIOLASE 2)Encodes a peroxisomal 3-keto-acyl-CoA thiolase 2 precursor. EC2.3.1.16 thiolases. AT5G48880.1 is named PKT1 and AT5G48880.2 is named PKT2.O.I.C.G.H.G.
24.399.6300.2At3g51240824287F3H (FLAVANONE 3-HYDROXYLASE)Encodes flavanone 3-hydroxylase that is coordinately expressed with chalcone synthase and chalcone isomerases. Regulates flavonoid biosynthesis.O.I.C.G.H.G.
23.599.613.1At1g31060839992unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
23.499.696.2At1g36160840521ACC1 (ACETYL-COENZYME A CARBOXYLASE 1)Encodes acetyl-CoA carboxylase. Mutant displays uncoordinated cell divisions which are enhanced by cytokinins. Mutant also has aberrant organization of the apical region in the embryo and abnormal root and shoot development. Essential for very long chain fatty acid elongation.O.I.C.G.H.G.
23.299.625.4At3g05360819700AtRLP30 (Receptor Like Protein 30)F:protein binding, kinase activity;P:defense response signaling pathway, resistance gene-independent, response to cyclopentenone, signal transduction, defense response;C:endomembrane system;PMOBFAVO.I.C.G.H.G.
22.799.630.7At1g65560842867allyl alcohol dehydrogenase, putativeF:oxidoreductase activity, binding, zinc ion binding, catalytic activity;P:oxidation reduction, metabolic process;C:cellular_component unknown;BOMFPAO.I.C.G.H.G.
22.699.6119.6At3g55120824678TT5 (TRANSPARENT TESTA 5)Catalyzes the conversion of chalcones into flavanones. Required for the accumulation of purple anthocyanins in leaves and stems.O.I.C.G.H.G.
22.199.6221.3At1g78570844193RHM1 (RHAMNOSE BIOSYNTHESIS 1)Encodes a UDP-L-Rhamnose synthase involved in the biosynthesis of rhamnose, a major monosaccharide component of pectin. Catalyzes the conversion of UDP-D-Glc to UDP-L-Rha. The dehydrogenase domain of RHM1 was shown to catalyze the conversion of UDP-D-Glc to the reaction intermediate UDP-4-keto-6-deoxy-D-Glc using recombinant protein assay but the activity of the full-length protein was not determined as it could not be expressed in E. coli.O.I.C.G.H.G.
21.499.650.4At1g51830841610ATP binding / kinase/ protein serine/threonine kinaseF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:cellular_component unknown;PMOBFVAO.I.C.G.H.G.
21.099.6103.8At2g07751815347NADH-ubiquinone oxidoreductase chain 3, putativeF:NADH dehydrogenase (ubiquinone) activity;P:mitochondrial electron transport, NADH to ubiquinone;C:endomembrane system;MOBPFAO.I.C.G.H.G.
19.499.6208.2At3g22620821833protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:chloroplast envelope;POBMFVO.I.C.G.H.G.
19.299.683.6At5g41040834106transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFBOO.I.C.G.H.G.
18.999.529.7At1g70170843353MMP (MATRIX METALLOPROTEINASE)mutant has Late flowering; Early senescence; Matrix MetalloproteinaseO.I.C.G.H.G.
17.399.564.5At5g62480836368ATGSTU9 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 9)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).O.I.C.G.H.G.
17.199.5102.5At5g62210836342embryo-specific protein-relatedF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;MPOFVBAO.I.C.G.H.G.
16.899.5122.5At2g03760814903STEncodes a brassinosteroid sulfotransferase. In vitro experiements show that this enzyme has a preference for 24-epibrassinosteroids, particularly 24-epicathasterone, but does not act on castasterone and brassinolide. It is differentially expressed during development, being more abundant in young seedlings and actively growing cell cultures. Expression is induced in response to salicylic acid and methyl jasmonate and bacterial pathogens.O.I.C.G.H.G.
16.699.579.5At5g40690834069-F:unknown;P:biological_process unknown;C:unknown;OMPFVBO.I.C.G.H.G.
16.599.56.2At5g58910836008LAC16 (laccase 16)putative laccase, a member of laccase family of genes (17 members in Arabidopsis).O.I.C.G.H.G.
16.499.593.6At5g20960832221AAO1 (ARABIDOPSIS ALDEHYDE OXIDASE 1)Encodes aldehyde oxidase AA01.O.I.C.G.H.G.
16.499.521.5At1g24150839028FH4 (FORMIN HOMOLOGUE 4)Encodes a group I formin. Localized to cell junctions. Polymerizes actin. Binds profilin.O.I.C.G.H.G.
16.399.543.8At1g68850843218peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBMO.I.C.G.H.G.
16.099.526.0At5g48940834952leucine-rich repeat transmembrane protein kinase, putativeF:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:unknown;MPOBFVAO.I.C.G.H.G.
15.399.418.7At3g45410823679lectin protein kinase family proteinencodes a receptor-like kinase that has serine/threonine kinase activity whose expression is induced by high salt stress. This induction is inhibited by tobacco ethylene receptor.O.I.C.G.H.G.
15.299.425.0At5g23190832383CYP86B1cytochrome P450 CYP86B1, nuclear gene for chloroplast productO.I.C.G.H.G.
14.999.476.4At1g80240844364unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plant-type cell wall;PBO.I.C.G.H.G.
14.399.423.9At1g54540841896-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
14.299.431.8At1g02220839476ANAC003 (Arabidopsis NAC domain containing protein 3)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PFO.I.C.G.H.G.
14.299.413.9At1g51840841611protein kinase-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
14.199.4117.3At2g36290818200hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:biological_process unknown;C:endoplasmic reticulum;BPOFAO.I.C.G.H.G.
14.199.456.6At3g26470822252-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
14.199.431.7At1g31050839991transcription factorF:transcription factor activity;P:regulation of transcription;C:nucleus;PO.I.C.G.H.G.
13.899.425.2At3g45730823715unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
13.799.418.8At4g37320829887CYP81D5member of CYP81DO.I.C.G.H.G.
13.699.456.9At5g43180834336unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBOO.I.C.G.H.G.
13.699.419.9At2g35770818149scpl28 (serine carboxypeptidase-like 28)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOBO.I.C.G.H.G.
13.599.4522.3At5g13930831241TT4 (TRANSPARENT TESTA 4)Encodes chalcone synthase (CHS), a key enzyme involved in the biosynthesis of flavonoids. Required for the accumulation of purple anthocyanins in leaves and stems. Also involved in the regulation of auxin transport and the modulation of root gravitropism.O.I.C.G.H.G.
13.599.4260.6At5g09530830812hydroxyproline-rich glycoprotein family proteinF:unknown;P:biological_process unknown;C:endomembrane system;MBOPFVAO.I.C.G.H.G.
13.599.461.6At5g63660836486PDF2.5Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.O.I.C.G.H.G.
13.599.436.2At2g23030816833SNRK2.9 (SNF1-RELATED PROTEIN KINASE 2.9)encodes a member of SNF1-related protein kinases (SnRK2)O.I.C.G.H.G.
13.499.432.8At1g60610842355protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOVFO.I.C.G.H.G.
13.499.48.1At1g53990841837GLIP3Contains lipase signature motif and GDSL domain.O.I.C.G.H.G.
12.999.310.8At4g09100826488zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVBO.I.C.G.H.G.
12.899.348.0At3g24240822011leucine-rich repeat transmembrane protein kinase, putativeF:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
12.599.342.5At3g47780823932ATATH6member of ATH subfamilyO.I.C.G.H.G.
12.599.327.3At2g25590817098agenet domain-containing proteinF:RNA binding;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
12.399.371.4At1g74460843787GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOMO.I.C.G.H.G.
12.399.330.0At1g01190839233CYP78A8member of CYP78AO.I.C.G.H.G.
12.299.347.0At5g13580831202ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:response to nematode;C:membrane;BOMAFPVO.I.C.G.H.G.
12.299.316.8At4g37730829929AtbZIP7 (Arabidopsis thaliana basic leucine-zipper 7)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMOFBO.I.C.G.H.G.
12.199.3107.9At5g59520836071ZIP2encodes a metal ion transporter whose expression is regulated by copper.O.I.C.G.H.G.
12.099.3188.8At5g06860830577PGIP1 (POLYGALACTURONASE INHIBITING PROTEIN 1)Encodes a polygalacturonase inhibiting protein involved in defense response. PGIPs inhibit the function of cell wall pectin degrading enzymes such as those produced by fungal pathogens. PGIP1 is induced by fungal infection.O.I.C.G.H.G.
11.899.347.8At4g17280827442-F:unknown;P:multicellular organismal development;C:membrane;PO.I.C.G.H.G.
11.699.358.8At2g47890819401zinc finger (B-box type) family proteinF:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;POO.I.C.G.H.G.
11.599.360.6At5g56500835751ATP binding / protein bindingF:protein binding, ATP binding;P:protein folding, cellular protein metabolic process;C:mitochondrion, chloroplast stroma, chloroplast, membrane;BOMFPAVO.I.C.G.H.G.
11.599.356.2At2g46750819288FAD-binding domain-containing proteinF:oxidoreductase activity, D-arabinono-1,4-lactone oxidase activity, FAD binding, catalytic activity;P:unknown;C:membrane;BOPFMAO.I.C.G.H.G.
11.499.326.4At2g04070814943antiporter/ drug transporter/ transporterF:antiporter activity, drug transporter activity, transporter activity;P:transport, multidrug transport;C:membrane;BOPFMAO.I.C.G.H.G.
11.499.310.4At1g67710843096ARR11 (RESPONSE REGULATOR 11)Encodes an Arabidopsis response regulator (ARR) protein that acts in concert with other type-B ARRs in the cytokinin signaling pathway.O.I.C.G.H.G.
11.399.341.5At1g650608428144CL3encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. mRNA levels are not induced in response to wounding or to fungal infection by P. parasitica. mRNA is expressed in flowers, to a lesser degree in mature leaves and siliques and marginally in seedling roots and bolting stems of mature plants. The catalytic efficiency was in the following (descending) order: p-coumaric acid, caffeic acid, ferulic acid, cinnamic acid and 5-OH-ferulic acid. At4CL3 was unable to use sinapic acid as substrate.O.I.C.G.H.G.
11.299.296.6At3g62040825377catalytic/ hydrolaseF:hydrolase activity, catalytic activity;P:metabolic process;C:unknown;OBPFAO.I.C.G.H.G.
11.199.222.0At1g12160837768flavin-containing monooxygenase family protein / FMO family proteinF:NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity;P:biological_process unknown;C:cellular_component unknown;BOMFPAO.I.C.G.H.G.
11.099.29.2At3g54520824617unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMBO.I.C.G.H.G.
10.999.216.9At5g06740830563lectin protein kinase family proteinF:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
10.999.210.8At5g39970833994catalyticF:catalytic activity;P:biological_process unknown;C:anchored to membrane;OBPMAFO.I.C.G.H.G.
10.999.29.9At4g04990825841unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPOFBVO.I.C.G.H.G.
10.899.212.9At4g29800829102PLP8 (PATATIN-LIKE PROTEIN 8)F:unknown;P:metabolic process, lipid metabolic process;C:cellular_component unknown;PBOFMO.I.C.G.H.G.
10.799.2286.1At4g37410829895CYP81F4member of CYP81FO.I.C.G.H.G.
10.799.2166.4At2g43610818963glycoside hydrolase family 19 proteinF:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:plasma membrane;PBFOVMO.I.C.G.H.G.
10.799.220.8At5g22890832353zinc finger (C2H2 type) family proteinF:transcription factor activity;P:response to chitin, regulation of transcription;C:intracellular;MOPFO.I.C.G.H.G.
10.699.2139.2At4g39675830122unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
10.699.258.0At2g41380818736embryo-abundant protein-relatedF:methyltransferase activity;P:response to cadmium ion;C:mitochondrion;BPFOMAO.I.C.G.H.G.
10.699.257.8At2g19110816428HMA4Encodes a protein with similarity to Zn ATPase. Can rescue Zn deficiency in yeast and Cd resistance, suggesting a role in Zn and Cd transport.O.I.C.G.H.G.
10.699.29.8At3g63330825508protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOFPBVAO.I.C.G.H.G.
10.599.229.8At4g05200825868protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
10.499.2220.7At3g53260824493PAL2Encodes phenylalanine lyase.O.I.C.G.H.G.
10.399.242.8At1g71330843474ATNAP5member of NAP subfamilyO.I.C.G.H.G.
10.399.27.0At4g09110826489zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVBO.I.C.G.H.G.
10.299.245.2At1g05060839336unknown proteinF:molecular_function unknown;P:unknown;C:cellular_component unknown;PO.I.C.G.H.G.
10.299.220.8At2g16760816177-F:molecular_function unknown;P:unknown;C:endoplasmic reticulum;PBOO.I.C.G.H.G.
10.199.2106.1At1g17180838289ATGSTU25 (GLUTATHIONE S-TRANSFERASE TAU 25)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).O.I.C.G.H.G.
10.199.294.6At5g66390836771peroxidase 72 (PER72) (P72) (PRXR8)F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBO.I.C.G.H.G.
10.099.210.5At1g35220840411unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPO.I.C.G.H.G.
9.999.192.1At3g10500820214anac053 (Arabidopsis NAC domain containing protein 53)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PBOFO.I.C.G.H.G.
9.999.179.0At5g434508343652-oxoglutarate-dependent dioxygenase, putativeencodes a protein whose sequence is similar to ACC oxidaseO.I.C.G.H.G.
9.999.19.0At1g03840839396MGP (Magpie)MGP is a nuclear-localized putative transcription factor with three zinc finger domains. MGP can interact with three proteins implicated in root patterning: SCR, SHR, and JKD in Y2H assays, and these interactions depend on the first zinc finger in MGP. MGP appears to be a direct transcriptional target of SHR and SCR, based on promoter binding assays, though it is not expressed in the QC, based on in situ hybridizations.O.I.C.G.H.G.
9.999.17.5At5g44160834439NUC (nutcracker)F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MOPFO.I.C.G.H.G.
9.899.1150.0At1g19530838540unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PO.I.C.G.H.G.
9.899.127.6At4g14580827106CIPK4 (CBL-interacting protein kinase 4)CBL-interacting protein kinaseO.I.C.G.H.G.
9.899.121.6At1g11080837649scpl31 (serine carboxypeptidase-like 31)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOBO.I.C.G.H.G.
9.799.173.0At1g16300838199GAPCP-2F:NAD or NADH binding, glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity, binding, catalytic activity, glyceraldehyde-3-phosphate dehydrogenase activity;P:glycolysis, glucose metabolic process, metabolic process;C:plastid;BOPFMAO.I.C.G.H.G.



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