CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM131391

Assay name AtGen_6-7211_UV-Bstress-Shoots-1.0h_Rep1

GSE experiment GSE5626: AtGenExpress: Stress Treatments (UV-B stress)

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
84.0 99.9 96.0 At5g42760 834285 - F:unknown;P:biological_process unknown;C:cellular_component unknown;BOAPMF O.I. C.G. H.G.
38.6 99.8 56.9 At3g21890 821744 zinc finger (B-box type) family protein F:transcription factor activity, zinc ion binding;P:response to UV-B, regulation of transcription;C:intracellular;PO O.I. C.G. H.G.
33.4 99.7 367.7 At4g14690 827119 ELIP2 (EARLY LIGHT-INDUCIBLE PROTEIN 2) Encodes an early light-induced protein. ELIPs are thought not to be directly involved in the synthesis and assembly of specific photosynthetic complexes, but rather affect the biogenesis of all chlorophyll-binding complexes. A study (PMID 17553115) has shown that the chlorophyll synthesis pathway was downregulated as a result of constitutive ELIP2 expression, leading to decreased chlorophyll availability for the assembly of pigment-binding proteins for photosynthesis. O.I. C.G. H.G.
31.0 99.7 107.0 At5g24120 832477 SIGE (SIGMA FACTOR E) Encodes a specialized sigma factor that functions in regulation of plastid genes and is responsible for the light-dependent transcription at the psbD LRP. Activation of SIG5 is dependent upon blue light and mediated by cryptochromes. O.I. C.G. H.G.
30.2 99.7 69.5 At4g31870 829316 ATGPX7 (glutathione peroxidase 7) Encodes glutathione peroxidase. O.I. C.G. H.G.
27.9 99.7 65.3 At4g27030 828811 small conjugating protein ligase F:small conjugating protein ligase activity;P:regulation of protein metabolic process, post-translational protein modification;C:chloroplast;MOPBV O.I. C.G. H.G.
27.7 99.7 48.9 At3g17609 821027 HYH (HY5-HOMOLOG) F:transcription factor activity, DNA binding;P:response to UV-B, anthocyanin metabolic process, regulation of transcription, DNA-dependent;C:nucleus;MPFO O.I. C.G. H.G.
27.6 99.7 118.6 At5g17050 831568 UGT78D2 (UDP-GLUCOSYL TRANSFERASE 78D2) The At5g17050 encodes a anthocyanidin 3-O-glucosyltransferase which specifically glucosylates the 3-position of the flavonoid C-ring. Anthocyanidins such as cyanidin and pelargonidin as well as flavonols such as kaempferol and quercetin are accepted substrates. O.I. C.G. H.G.
27.5 99.7 62.0 At1g64500 842758 glutaredoxin family protein F:electron carrier activity, protein disulfide oxidoreductase activity;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;PMBOF O.I. C.G. H.G.
25.8 99.7 74.8 At5g52570 835334 BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2) Converts β-carotene to zeaxanthin via cryptoxanthin. O.I. C.G. H.G.
24.8 99.6 35.6 At2g15020 815991 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
22.6 99.6 54.4 At3g44630 823589 disease resistance protein RPP1-WsB-like (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:N-terminal protein myristoylation, defense response;C:intrinsic to membrane;PMBOFAV O.I. C.G. H.G.
22.2 99.6 18.7 At4g15480 827220 UGT84A1 Encodes a protein that might have sinapic acid:UDP-glucose glucosyltransferase activity. O.I. C.G. H.G.
21.7 99.6 87.7 At4g02200 827516 drought-responsive family protein F:unknown;P:response to water deprivation;C:unknown;PM O.I. C.G. H.G.
20.9 99.6 309.5 At4g27280 828836 calcium-binding EF hand family protein F:calcium ion binding;P:biological_process unknown;C:unknown;MPOF O.I. C.G. H.G.
20.7 99.6 20.0 At3g15310 820762 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
20.3 99.6 19.7 At1g66540 842972 cytochrome P450, putative F:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:unknown;C:unknown;MPFBOAV O.I. C.G. H.G.
19.1 99.6 30.0 At5g58120 835924 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFA O.I. C.G. H.G.
18.6 99.5 45.7 At1g69730 843309 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system, integral to membrane;MPOBFVA O.I. C.G. H.G.
18.4 99.5 41.6 At3g46530 823806 RPP13 (RECOGNITION OF PERONOSPORA PARASITICA 13) Confers resistance to the biotrophic oomycete, Peronospora parasitica. Encodes an NBS-LRR type R protein with a putative amino-terminal leucine zipper. Fungal protein ATR13 induces RPP13 gene expression and disease resistance. O.I. C.G. H.G.
17.2 99.5 50.5 At5g23730 832438 nucleotide binding F:nucleotide binding;P:unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;MFBOPA O.I. C.G. H.G.
16.8 99.5 18.0 At5g46470 834690 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAV O.I. C.G. H.G.
16.6 99.5 84.5 At3g44450 823570 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
16.5 99.5 102.7 At1g33600 840254 leucine-rich repeat family protein F:protein binding;P:signal transduction;C:cell wall, membrane, plant-type cell wall;PMBOFAV O.I. C.G. H.G.
16.5 99.5 31.7 At2g41120 818711 unknown protein F:unknown;P:biological_process unknown;C:chloroplast;BOP O.I. C.G. H.G.
16.4 99.5 39.1 At1g76570 843990 chlorophyll A-B binding family protein F:chlorophyll binding;P:response to blue light, response to far red light, photosynthesis;C:light-harvesting complex, chloroplast, membrane;POM O.I. C.G. H.G.
16.3 99.5 11.5 At3g16175 820863 thioesterase family protein F:hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity;P:biological_process unknown;C:cellular_component unknown;PMBFO O.I. C.G. H.G.
16.2 99.5 242.6 At3g17800 821048 - mRNA level of the MEB5.2 gene (At3g17800) remains unchanged after cutting the inflorescence stem O.I. C.G. H.G.
15.7 99.5 40.7 At2g41040 818703 methyltransferase-related F:methyltransferase activity;P:metabolic process;C:chloroplast, plastoglobule;BOAPFM O.I. C.G. H.G.
15.5 99.5 195.0 At1g65490 842861 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
15.4 99.5 57.2 At2g24540 816990 AFR (ATTENUATED FAR-RED RESPONSE) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOFVA O.I. C.G. H.G.
15.4 99.5 11.2 At1g01520 839337 myb family transcription factor F:transcription factor activity, DNA binding;P:response to salt stress, regulation of transcription, DNA-dependent;C:unknown;POM O.I. C.G. H.G.
15.3 99.4 37.2 At2g27420 817287 cysteine proteinase, putative F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:endomembrane system;MOPBVAF O.I. C.G. H.G.
14.3 99.4 40.9 At1g78510 844187 SPS1 (solanesyl diphosphate synthase 1) Encodes a protein with solanesyl diphosphate synthase activity. O.I. C.G. H.G.
14.0 99.4 199.4 At2g38210 818400 PDX1L4 (PUTATIVE PDX1-LIKE PROTEIN 4) F:unknown;P:response to ethylene stimulus, response to stress;C:plasma membrane;BOAFPM O.I. C.G. H.G.
13.8 99.4 152.3 At3g56290 824796 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
12.9 99.3 26.8 At2g19650 816484 DC1 domain-containing protein F:unknown;P:intracellular signaling cascade;C:unknown;POM O.I. C.G. H.G.
12.5 99.3 188.1 At1g69840 843320 band 7 family protein F:unknown;P:biological_process unknown;C:plasma membrane, chloroplast, vacuole;BOMFPAV O.I. C.G. H.G.
12.5 99.3 93.2 At1g66330 842950 senescence-associated family protein F:unknown;P:senescence;C:unknown;PB O.I. C.G. H.G.
12.5 99.3 12.8 At4g19510 827692 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMOBFA O.I. C.G. H.G.
12.3 99.3 37.6 At1g51660 841591 ATMKK4 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4) Encodes a mitogen-activated map kinase kinase (there are nine in Arabidopsis) involved in innate immunity. This protein activates MPK3/MPK6 and early-defense genes redundantly with MKK5. In plants with both MKK5 and MKK6 levels reduced by RNAi plants, floral organs do not abscise suggestion a role for both proteins in mediating floral organ abscission. O.I. C.G. H.G.
12.2 99.3 34.0 At5g19850 832105 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:unknown;BOMPFA O.I. C.G. H.G.
12.1 99.3 115.9 At5g24150 832480 SQP1 squalene monooxygenase gene homolog O.I. C.G. H.G.
12.1 99.3 16.5 At1g12880 837845 atnudt12 (Arabidopsis thaliana Nudix hydrolase homolog 12) F:hydrolase activity;P:biological_process unknown;C:unknown;BMPOF O.I. C.G. H.G.
12.0 99.3 38.4 At5g41740 834177 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, chloroplast;PMBOFA O.I. C.G. H.G.
11.3 99.3 155.5 At5g51720 835246 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;MPO O.I. C.G. H.G.
11.2 99.2 67.4 At2g24600 816996 ankyrin repeat family protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOPBFVA O.I. C.G. H.G.
11.2 99.2 53.8 At1g17050 838275 SPS2 (Solanesyl diphosphate synthase 2) Encodes a protein with solanesyl diphosphate synthase activity. O.I. C.G. H.G.
11.0 99.2 15.5 At1g65870 842898 disease resistance-responsive family protein F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:cell wall;P O.I. C.G. H.G.
10.9 99.2 21.8 At3g23110 821886 AtRLP37 (Receptor Like Protein 37) F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAV O.I. C.G. H.G.
10.8 99.2 29.3 At5g52250 835301 transducin family protein / WD-40 repeat family protein Encodes a transducin protein whose gene expression is induced by UV-B. This induction is reduced in hy5 mutant and may be a target of HY5 during UV-B response. O.I. C.G. H.G.
10.6 99.2 292.7 At4g12720 826884 NUDT7 Encodes a protein with ADP-ribose hydrolase activity. Negatively regulates EDS1-conditioned plant defense and programmed cell death. O.I. C.G. H.G.
10.6 99.2 192.8 At1g50250 841447 FTSH1 (FtsH protease 1) encodes an FTSH protease that is localized to the chloroplast. Involved in the D1 repair cycle of Photosystem II. FtsH1 and FtsH5 are interchangeable in thylakoid membranes. O.I. C.G. H.G.
10.4 99.2 55.4 At1g72940 843625 disease resistance protein (TIR-NBS class), putative F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PB O.I. C.G. H.G.
10.4 99.2 29.5 At5g50100 835074 - F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;OBPM O.I. C.G. H.G.
10.4 99.2 16.8 At4g26150 828721 CGA1 (CYTOKININ-RESPONSIVE GATA FACTOR 1) F:transcription factor activity;P:response to cytokinin stimulus;C:nucleus;FPOM O.I. C.G. H.G.
10.2 99.2 24.7 At3g52740 824440 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
10.2 99.2 17.7 At5g56860 835788 GNC (GATA, nitrate-inducible, carbon metabolism-involved) F:transcription factor activity;P:glucose mediated signaling, regulation of nitrogen compound metabolic process;C:nucleus;FPOMB O.I. C.G. H.G.
10.0 99.2 31.5 At1g24140 839026 matrixin family protein F:metallopeptidase activity, metalloendopeptidase activity;P:proteolysis, metabolic process;C:anchored to membrane;MOPBVAF O.I. C.G. H.G.
9.8 99.1 22.3 At5g11260 830996 HY5 (ELONGATED HYPOCOTYL 5) Basic leucine zipper (bZIP) transcription factor. Nuclear localization. Involved in light-regulated transcriptional activation of G-box-containing promoters. Negatively regulated by Cop1. Although cytokinins do not appear to affect the gene's promoter activity, they appear to stabilize the protein. HY5 plays a role in anthocyanin accumulation in far-red light and blue light, but not in red light or in the dark. Mutant studies showed that the gene product is involved in the positive regulation of the PHYA-mediated inhibition of hypocotyl elongation. Binds to G- and Z-boxes, and other ACEs, but not to E-box. Loss of function mutation shows ABA resistant seedling phenotypes suggesting involvement for HY5 in mediating ABA responses. Binds to the promoter of ABI5 and regulates its expression. O.I. C.G. H.G.
9.8 99.1 11.1 At3g30460 822758 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB O.I. C.G. H.G.
9.6 99.1 33.8 At2g32870 817848 meprin and TRAF homology domain-containing protein / MATH domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOF O.I. C.G. H.G.
9.6 99.1 19.2 At5g20220 832144 zinc knuckle (CCHC-type) family protein F:unfolded protein binding, heat shock protein binding, zinc ion binding, nucleic acid binding;P:protein folding;C:unknown;VMFOPB O.I. C.G. H.G.
9.5 99.1 25.0 At3g09650 820122 HCF152 (HIGH CHLOROPHYLL FLUORESCENCE 152) RNA binding protein involved in the processing of chloroplast psbB-psbT-psbH-petB-petD transcript unit. O.I. C.G. H.G.
9.5 99.1 10.3 At3g19380 821472 PUB25 (PLANT U-BOX 25) F:ubiquitin-protein ligase activity, binding;P:response to chitin;C:ubiquitin ligase complex;POMFBV O.I. C.G. H.G.
9.3 99.1 58.0 At1g42550 840860 PMI1 (PLASTID MOVEMENT IMPAIRED1) Encodes a plant-specific protein of unknown function that appears to be conserved among angiosperms. O.I. C.G. H.G.
9.3 99.1 26.0 At1g53090 841743 SPA4 (SPA1-RELATED 4) Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA4 (and SPA3) predominantly regulates elongation growth in adult plants. O.I. C.G. H.G.
9.2 99.1 89.6 At5g15950 831452 adenosylmethionine decarboxylase family protein F:adenosylmethionine decarboxylase activity;P:spermidine biosynthetic process, spermine biosynthetic process, polyamine biosynthetic process;C:cellular_component unknown;PMFOB O.I. C.G. H.G.
9.2 99.1 63.2 At1g07250 837236 UGT71C4 (UDP-GLUCOSYL TRANSFERASE 71C4) F:quercetin 3-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOF O.I. C.G. H.G.
9.1 99.1 166.8 At4g34150 829563 C2 domain-containing protein F:unknown;P:response to cold;C:unknown;MPFOBVA O.I. C.G. H.G.
9.1 99.1 11.7 At5g25120 832583 CYP71B11 putative cytochrome P450 O.I. C.G. H.G.
9.0 99.1 13.5 At5g37550 833733 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
8.9 99.0 32.0 At3g48090 823964 EDS1 (enhanced disease susceptibility 1) Component of R gene-mediated disease resistance in Arabidopsis thaliana with homology to eukaryotic lipases. O.I. C.G. H.G.
8.9 99.0 27.3 At5g56850 835787 unknown protein F:unknown;P:unknown;C:unknown;OMBFPAV O.I. C.G. H.G.
8.7 99.0 19.6 At3g49160 824077 pyruvate kinase family protein Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress. O.I. C.G. H.G.
8.7 99.0 6.1 At3g44400 823565 disease resistance protein (TIR-NBS-LRR class), putative F:protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, endomembrane system;PMBOFAV O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
84.0	99.9	96.0	At5g42760	834285	-	F:unknown;P:biological_process unknown;C:cellular_component unknown;BOAPMF	O.I.	C.G.	H.G.
38.6	99.8	56.9	At3g21890	821744	zinc finger (B-box type) family protein	F:transcription factor activity, zinc ion binding;P:response to UV-B, regulation of transcription;C:intracellular;PO	O.I.	C.G.	H.G.
33.4	99.7	367.7	At4g14690	827119	ELIP2 (EARLY LIGHT-INDUCIBLE PROTEIN 2)	Encodes an early light-induced protein. ELIPs are thought not to be directly involved in the synthesis and assembly of specific photosynthetic complexes, but rather affect the biogenesis of all chlorophyll-binding complexes. A study (PMID 17553115) has shown that the chlorophyll synthesis pathway was downregulated as a result of constitutive ELIP2 expression, leading to decreased chlorophyll availability for the assembly of pigment-binding proteins for photosynthesis.	O.I.	C.G.	H.G.
31.0	99.7	107.0	At5g24120	832477	SIGE (SIGMA FACTOR E)	Encodes a specialized sigma factor that functions in regulation of plastid genes and is responsible for the light-dependent transcription at the psbD LRP. Activation of SIG5 is dependent upon blue light and mediated by cryptochromes.	O.I.	C.G.	H.G.
30.2	99.7	69.5	At4g31870	829316	ATGPX7 (glutathione peroxidase 7)	Encodes glutathione peroxidase.	O.I.	C.G.	H.G.
27.9	99.7	65.3	At4g27030	828811	small conjugating protein ligase	F:small conjugating protein ligase activity;P:regulation of protein metabolic process, post-translational protein modification;C:chloroplast;MOPBV	O.I.	C.G.	H.G.
27.7	99.7	48.9	At3g17609	821027	HYH (HY5-HOMOLOG)	F:transcription factor activity, DNA binding;P:response to UV-B, anthocyanin metabolic process, regulation of transcription, DNA-dependent;C:nucleus;MPFO	O.I.	C.G.	H.G.
27.6	99.7	118.6	At5g17050	831568	UGT78D2 (UDP-GLUCOSYL TRANSFERASE 78D2)	The At5g17050 encodes a anthocyanidin 3-O-glucosyltransferase which specifically glucosylates the 3-position of the flavonoid C-ring. Anthocyanidins such as cyanidin and pelargonidin as well as flavonols such as kaempferol and quercetin are accepted substrates.	O.I.	C.G.	H.G.
27.5	99.7	62.0	At1g64500	842758	glutaredoxin family protein	F:electron carrier activity, protein disulfide oxidoreductase activity;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;PMBOF	O.I.	C.G.	H.G.
25.8	99.7	74.8	At5g52570	835334	BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2)	Converts β-carotene to zeaxanthin via cryptoxanthin.	O.I.	C.G.	H.G.
24.8	99.6	35.6	At2g15020	815991	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
22.6	99.6	54.4	At3g44630	823589	disease resistance protein RPP1-WsB-like (TIR-NBS-LRR class), putative	F:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:N-terminal protein myristoylation, defense response;C:intrinsic to membrane;PMBOFAV	O.I.	C.G.	H.G.
22.2	99.6	18.7	At4g15480	827220	UGT84A1	Encodes a protein that might have sinapic acid:UDP-glucose glucosyltransferase activity.	O.I.	C.G.	H.G.
21.7	99.6	87.7	At4g02200	827516	drought-responsive family protein	F:unknown;P:response to water deprivation;C:unknown;PM	O.I.	C.G.	H.G.
20.9	99.6	309.5	At4g27280	828836	calcium-binding EF hand family protein	F:calcium ion binding;P:biological_process unknown;C:unknown;MPOF	O.I.	C.G.	H.G.
20.7	99.6	20.0	At3g15310	820762	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
20.3	99.6	19.7	At1g66540	842972	cytochrome P450, putative	F:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:unknown;C:unknown;MPFBOAV	O.I.	C.G.	H.G.
19.1	99.6	30.0	At5g58120	835924	disease resistance protein (TIR-NBS-LRR class), putative	F:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFA	O.I.	C.G.	H.G.
18.6	99.5	45.7	At1g69730	843309	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system, integral to membrane;MPOBFVA	O.I.	C.G.	H.G.
18.4	99.5	41.6	At3g46530	823806	RPP13 (RECOGNITION OF PERONOSPORA PARASITICA 13)	Confers resistance to the biotrophic oomycete, Peronospora parasitica. Encodes an NBS-LRR type R protein with a putative amino-terminal leucine zipper. Fungal protein ATR13 induces RPP13 gene expression and disease resistance.	O.I.	C.G.	H.G.
17.2	99.5	50.5	At5g23730	832438	nucleotide binding	F:nucleotide binding;P:unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;MFBOPA	O.I.	C.G.	H.G.
16.8	99.5	18.0	At5g46470	834690	disease resistance protein (TIR-NBS-LRR class), putative	F:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAV	O.I.	C.G.	H.G.
16.6	99.5	84.5	At3g44450	823570	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
16.5	99.5	102.7	At1g33600	840254	leucine-rich repeat family protein	F:protein binding;P:signal transduction;C:cell wall, membrane, plant-type cell wall;PMBOFAV	O.I.	C.G.	H.G.
16.5	99.5	31.7	At2g41120	818711	unknown protein	F:unknown;P:biological_process unknown;C:chloroplast;BOP	O.I.	C.G.	H.G.
16.4	99.5	39.1	At1g76570	843990	chlorophyll A-B binding family protein	F:chlorophyll binding;P:response to blue light, response to far red light, photosynthesis;C:light-harvesting complex, chloroplast, membrane;POM	O.I.	C.G.	H.G.
16.3	99.5	11.5	At3g16175	820863	thioesterase family protein	F:hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity;P:biological_process unknown;C:cellular_component unknown;PMBFO	O.I.	C.G.	H.G.
16.2	99.5	242.6	At3g17800	821048	-	mRNA level of the MEB5.2 gene (At3g17800) remains unchanged after cutting the inflorescence stem	O.I.	C.G.	H.G.
15.7	99.5	40.7	At2g41040	818703	methyltransferase-related	F:methyltransferase activity;P:metabolic process;C:chloroplast, plastoglobule;BOAPFM	O.I.	C.G.	H.G.
15.5	99.5	195.0	At1g65490	842861	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
15.4	99.5	57.2	At2g24540	816990	AFR (ATTENUATED FAR-RED RESPONSE)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOFVA	O.I.	C.G.	H.G.
15.4	99.5	11.2	At1g01520	839337	myb family transcription factor	F:transcription factor activity, DNA binding;P:response to salt stress, regulation of transcription, DNA-dependent;C:unknown;POM	O.I.	C.G.	H.G.
15.3	99.4	37.2	At2g27420	817287	cysteine proteinase, putative	F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:endomembrane system;MOPBVAF	O.I.	C.G.	H.G.
14.3	99.4	40.9	At1g78510	844187	SPS1 (solanesyl diphosphate synthase 1)	Encodes a protein with solanesyl diphosphate synthase activity.	O.I.	C.G.	H.G.
14.0	99.4	199.4	At2g38210	818400	PDX1L4 (PUTATIVE PDX1-LIKE PROTEIN 4)	F:unknown;P:response to ethylene stimulus, response to stress;C:plasma membrane;BOAFPM	O.I.	C.G.	H.G.
13.8	99.4	152.3	At3g56290	824796	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
12.9	99.3	26.8	At2g19650	816484	DC1 domain-containing protein	F:unknown;P:intracellular signaling cascade;C:unknown;POM	O.I.	C.G.	H.G.
12.5	99.3	188.1	At1g69840	843320	band 7 family protein	F:unknown;P:biological_process unknown;C:plasma membrane, chloroplast, vacuole;BOMFPAV	O.I.	C.G.	H.G.
12.5	99.3	93.2	At1g66330	842950	senescence-associated family protein	F:unknown;P:senescence;C:unknown;PB	O.I.	C.G.	H.G.
12.5	99.3	12.8	At4g19510	827692	disease resistance protein (TIR-NBS-LRR class), putative	F:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMOBFA	O.I.	C.G.	H.G.
12.3	99.3	37.6	At1g51660	841591	ATMKK4 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4)	Encodes a mitogen-activated map kinase kinase (there are nine in Arabidopsis) involved in innate immunity. This protein activates MPK3/MPK6 and early-defense genes redundantly with MKK5. In plants with both MKK5 and MKK6 levels reduced by RNAi plants, floral organs do not abscise suggestion a role for both proteins in mediating floral organ abscission.	O.I.	C.G.	H.G.
12.2	99.3	34.0	At5g19850	832105	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:unknown;C:unknown;BOMPFA	O.I.	C.G.	H.G.
12.1	99.3	115.9	At5g24150	832480	SQP1	squalene monooxygenase gene homolog	O.I.	C.G.	H.G.
12.1	99.3	16.5	At1g12880	837845	atnudt12 (Arabidopsis thaliana Nudix hydrolase homolog 12)	F:hydrolase activity;P:biological_process unknown;C:unknown;BMPOF	O.I.	C.G.	H.G.
12.0	99.3	38.4	At5g41740	834177	disease resistance protein (TIR-NBS-LRR class), putative	F:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, chloroplast;PMBOFA	O.I.	C.G.	H.G.
11.3	99.3	155.5	At5g51720	835246	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;MPO	O.I.	C.G.	H.G.
11.2	99.2	67.4	At2g24600	816996	ankyrin repeat family protein	F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOPBFVA	O.I.	C.G.	H.G.
11.2	99.2	53.8	At1g17050	838275	SPS2 (Solanesyl diphosphate synthase 2)	Encodes a protein with solanesyl diphosphate synthase activity.	O.I.	C.G.	H.G.
11.0	99.2	15.5	At1g65870	842898	disease resistance-responsive family protein	F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:cell wall;P	O.I.	C.G.	H.G.
10.9	99.2	21.8	At3g23110	821886	AtRLP37 (Receptor Like Protein 37)	F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAV	O.I.	C.G.	H.G.
10.8	99.2	29.3	At5g52250	835301	transducin family protein / WD-40 repeat family protein	Encodes a transducin protein whose gene expression is induced by UV-B. This induction is reduced in hy5 mutant and may be a target of HY5 during UV-B response.	O.I.	C.G.	H.G.
10.6	99.2	292.7	At4g12720	826884	NUDT7	Encodes a protein with ADP-ribose hydrolase activity. Negatively regulates EDS1-conditioned plant defense and programmed cell death.	O.I.	C.G.	H.G.
10.6	99.2	192.8	At1g50250	841447	FTSH1 (FtsH protease 1)	encodes an FTSH protease that is localized to the chloroplast. Involved in the D1 repair cycle of Photosystem II. FtsH1 and FtsH5 are interchangeable in thylakoid membranes.	O.I.	C.G.	H.G.
10.4	99.2	55.4	At1g72940	843625	disease resistance protein (TIR-NBS class), putative	F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PB	O.I.	C.G.	H.G.
10.4	99.2	29.5	At5g50100	835074	-	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;OBPM	O.I.	C.G.	H.G.
10.4	99.2	16.8	At4g26150	828721	CGA1 (CYTOKININ-RESPONSIVE GATA FACTOR 1)	F:transcription factor activity;P:response to cytokinin stimulus;C:nucleus;FPOM	O.I.	C.G.	H.G.
10.2	99.2	24.7	At3g52740	824440	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
10.2	99.2	17.7	At5g56860	835788	GNC (GATA, nitrate-inducible, carbon metabolism-involved)	F:transcription factor activity;P:glucose mediated signaling, regulation of nitrogen compound metabolic process;C:nucleus;FPOMB	O.I.	C.G.	H.G.
10.0	99.2	31.5	At1g24140	839026	matrixin family protein	F:metallopeptidase activity, metalloendopeptidase activity;P:proteolysis, metabolic process;C:anchored to membrane;MOPBVAF	O.I.	C.G.	H.G.
9.8	99.1	22.3	At5g11260	830996	HY5 (ELONGATED HYPOCOTYL 5)	Basic leucine zipper (bZIP) transcription factor. Nuclear localization. Involved in light-regulated transcriptional activation of G-box-containing promoters. Negatively regulated by Cop1. Although cytokinins do not appear to affect the gene's promoter activity, they appear to stabilize the protein. HY5 plays a role in anthocyanin accumulation in far-red light and blue light, but not in red light or in the dark. Mutant studies showed that the gene product is involved in the positive regulation of the PHYA-mediated inhibition of hypocotyl elongation. Binds to G- and Z-boxes, and other ACEs, but not to E-box. Loss of function mutation shows ABA resistant seedling phenotypes suggesting involvement for HY5 in mediating ABA responses. Binds to the promoter of ABI5 and regulates its expression.	O.I.	C.G.	H.G.
9.8	99.1	11.1	At3g30460	822758	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB	O.I.	C.G.	H.G.
9.6	99.1	33.8	At2g32870	817848	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOF	O.I.	C.G.	H.G.
9.6	99.1	19.2	At5g20220	832144	zinc knuckle (CCHC-type) family protein	F:unfolded protein binding, heat shock protein binding, zinc ion binding, nucleic acid binding;P:protein folding;C:unknown;VMFOPB	O.I.	C.G.	H.G.
9.5	99.1	25.0	At3g09650	820122	HCF152 (HIGH CHLOROPHYLL FLUORESCENCE 152)	RNA binding protein involved in the processing of chloroplast psbB-psbT-psbH-petB-petD transcript unit.	O.I.	C.G.	H.G.
9.5	99.1	10.3	At3g19380	821472	PUB25 (PLANT U-BOX 25)	F:ubiquitin-protein ligase activity, binding;P:response to chitin;C:ubiquitin ligase complex;POMFBV	O.I.	C.G.	H.G.
9.3	99.1	58.0	At1g42550	840860	PMI1 (PLASTID MOVEMENT IMPAIRED1)	Encodes a plant-specific protein of unknown function that appears to be conserved among angiosperms.	O.I.	C.G.	H.G.
9.3	99.1	26.0	At1g53090	841743	SPA4 (SPA1-RELATED 4)	Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA4 (and SPA3) predominantly regulates elongation growth in adult plants.	O.I.	C.G.	H.G.
9.2	99.1	89.6	At5g15950	831452	adenosylmethionine decarboxylase family protein	F:adenosylmethionine decarboxylase activity;P:spermidine biosynthetic process, spermine biosynthetic process, polyamine biosynthetic process;C:cellular_component unknown;PMFOB	O.I.	C.G.	H.G.
9.2	99.1	63.2	At1g07250	837236	UGT71C4 (UDP-GLUCOSYL TRANSFERASE 71C4)	F:quercetin 3-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOF	O.I.	C.G.	H.G.
9.1	99.1	166.8	At4g34150	829563	C2 domain-containing protein	F:unknown;P:response to cold;C:unknown;MPFOBVA	O.I.	C.G.	H.G.
9.1	99.1	11.7	At5g25120	832583	CYP71B11	putative cytochrome P450	O.I.	C.G.	H.G.
9.0	99.1	13.5	At5g37550	833733	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
8.9	99.0	32.0	At3g48090	823964	EDS1 (enhanced disease susceptibility 1)	Component of R gene-mediated disease resistance in Arabidopsis thaliana with homology to eukaryotic lipases.	O.I.	C.G.	H.G.
8.9	99.0	27.3	At5g56850	835787	unknown protein	F:unknown;P:unknown;C:unknown;OMBFPAV	O.I.	C.G.	H.G.
8.7	99.0	19.6	At3g49160	824077	pyruvate kinase family protein	Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress.	O.I.	C.G.	H.G.
8.7	99.0	6.1	At3g44400	823565	disease resistance protein (TIR-NBS-LRR class), putative	F:protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, endomembrane system;PMBOFAV	O.I.	C.G.	H.G.

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GSM ID	GSM131391
Assay name	AtGen_6-7211_UV-Bstress-Shoots-1.0h_Rep1
GSE experiment	GSE5626: AtGenExpress: Stress Treatments (UV-B stress)

Microarray experiments to specifically-expressed genes

GSM ID GSM131391 Assay name AtGen_6-7211_UV-Bstress-Shoots-1.0h_Rep1 GSE experiment GSE5626: AtGenExpress: Stress Treatments (UV-B stress)

GSM ID GSM131391

Assay name AtGen_6-7211_UV-Bstress-Shoots-1.0h_Rep1

GSE experiment GSE5626: AtGenExpress: Stress Treatments (UV-B stress)