Microarray experiments to specifically-expressed genes

GSM ID GSM131382
Assay name AtGen_6-5622_Genotoxicstress-Roots-24.0h_Rep2
GSE experiment GSE5625: AtGenExpress: Stress Treatments (Genotoxic stress)

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
126.499.947.2At4g31970829327CYP82C2member of CYP82CO.I.C.G.H.G.
123.899.9100.0At4g02390828049APP (ARABIDOPSIS POLY(ADP-RIBOSE) POLYMERASE)Encodes a DNA dependent nuclear poly (ADP-ribose) polymerase (E.C.2.4.2.30), thought to be involved in post-translational modification .O.I.C.G.H.G.
117.199.957.4At4g31940829324CYP82C4member of CYP82CO.I.C.G.H.G.
113.199.942.2At1g08260837346TIL1 (TILTED 1)Similar to POL2A, DNA polymerase epsilon catalytic subunit. Essential for Arabidopsis growth. Null homozygotes are embryo lethal, partial loss of function alleles show embryo patterning defects such as root pole displacement. Delayed progression through cell cycle results in embryos with smaller numbers of larger cells.O.I.C.G.H.G.
102.199.914.0At3g21850821739ASK9 (ARABIDOPSIS SKP1-LIKE 9)one of Arabidopsis SKP1 homologuesO.I.C.G.H.G.
99.199.998.2At5g48720834930XRI1 (X-RAY INDUCED TRANSCRIPT 1)Encodes XRI1 (X-ray induced 1). Required for post-meiotic stages of pollen development and male and female meiosis. Maybe required for meiotic DNA repair. Inducible by X-ray. Homozygous xri1 mutants are sterile due to extensive chromosome fragmentation.O.I.C.G.H.G.
94.199.930.1At5g03780831726TRFL10 (TRF-LIKE 10)Encodes a protein whose sequence is similar to human telomere proteins. This belongs to TRFL family 2, which do not show DNA binding in vitro.O.I.C.G.H.G.
92.899.964.1At5g24280832495-F:unknown;P:unknown;C:unknown;PMOBFO.I.C.G.H.G.
84.699.916.8At1g74770843816protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOFVBO.I.C.G.H.G.
81.899.9102.2At5g38910833883germin-like protein, putativeF:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFOBO.I.C.G.H.G.
76.199.9235.9At3g07800819971thymidine kinase, putativeF:thymidine kinase activity, ATP binding;P:pyrimidine deoxyribonucleoside interconversion, anaerobic respiration;C:cellular_component unknown;BOVMPAFO.I.C.G.H.G.
65.899.8134.9At5g48020834853unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPFMO.I.C.G.H.G.
63.799.8101.0At2g30750817626CYP71A12 (cytochrome P450, family 71, subfamily A, polypeptide 12)putative cytochrome P450O.I.C.G.H.G.
60.799.829.6At5g40840834084SYN2Cohesion family protein SYN2 (SYN2).O.I.C.G.H.G.
56.999.8161.9At3g28510822481AAA-type ATPase family proteinF:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;OMBFPAVO.I.C.G.H.G.
56.299.866.0At2g18360816351hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:unknown;C:endomembrane system;BOMPFAO.I.C.G.H.G.
47.799.842.1At4g21070827854ATBRCA1Encodes AtBRCA1, an ortholog of the human breast cancer susceptibility gene 1. Contains one N-terminal RING finger, two C-terminal BRCT and the p300/CBP interacting domain. Strongly induced by gamma rays, consistent with a putative role in DNA repair and in cell cycle control.O.I.C.G.H.G.
41.499.8138.4At1g18970838478GLP4 (GERMIN-LIKE PROTEIN 4)Encodes a germin-like protein with possible oxalate oxidase activity (based on GenBank record).O.I.C.G.H.G.
40.499.838.1At1g68880843221AtbZIP (Arabidopsis thaliana basic leucine-zipper 8)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, chloroplast;PMFOO.I.C.G.H.G.
40.299.822.9At1g59730842266ATH7 (thioredoxin H-type 7)F:unknown;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;BOMPFAVO.I.C.G.H.G.
38.899.827.5At2g45460819154forkhead-associated domain-containing protein / FHA domain-containing proteinF:transcription factor activity;P:regulation of transcription, DNA-dependent;C:chloroplast;MOBFPAVO.I.C.G.H.G.
37.199.785.1At2g151203768033-F:unknown;P:unknown;C:unknownO.I.C.G.H.G.
36.999.761.7At4g31730829301GDU1 (GLUTAMINE DUMPER 1)Glutamine dumper1 is a putative transmembrane protein. It is involved in glutamine secretionO.I.C.G.H.G.
36.399.792.4At5g45070834538AtPP2-A8 (Phloem protein 2-A8)F:carbohydrate binding;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PO.I.C.G.H.G.
35.799.763.5At1g07500837264unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
35.699.720.0At5g43690834389sulfotransferase family proteinF:sulfotransferase activity;P:biological_process unknown;C:cellular_component unknown;MPOBFO.I.C.G.H.G.
35.599.725.0At5g67430836879GCN5-related N-acetyltransferase (GNAT) family proteinF:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;PBAO.I.C.G.H.G.
34.699.737.4At2g47200819333unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
34.299.765.3At1g74760--O.I.C.G.H.G.
33.699.729.8At5g66130836745ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE)Encodes a homolog to yeast RAD17. Involved in the regulation of DNA damage repair and homologous recombination. Mutant has increased sensitivity to MMS and increased telomere lengths.O.I.C.G.H.G.
33.599.7154.3At4g19690827713IRT1 (iron-regulated transporter 1)Fe(II) transport protein (IRT1)O.I.C.G.H.G.
31.499.7174.1At5g59520836071ZIP2encodes a metal ion transporter whose expression is regulated by copper.O.I.C.G.H.G.
31.199.768.1At5g63560836475transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO.I.C.G.H.G.
30.099.741.0At4g37490829904CYCB1Cyclin-dependent protein kinase CYCB1;1. Functions as an effector of growth control at G2/M. Regulated by TCP20.O.I.C.G.H.G.
30.099.720.7At4g35740829727RecQl3F:helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding;P:DNA recombination;C:cellular_component unknown;BOMFPAVO.I.C.G.H.G.
29.699.738.5At2g31320817690PARP2 (POLY(ADP-RIBOSE) POLYMERASE 2)Abiotic Stress-inducible gene.O.I.C.G.H.G.
29.299.745.7At1g02220839476ANAC003 (Arabidopsis NAC domain containing protein 3)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PFO.I.C.G.H.G.
29.299.711.5At1g71200843460DNA binding / transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PO.I.C.G.H.G.
28.999.761.5At3g44540823579FAR4 (FATTY ACID REDUCTASE 4)F:oxidoreductase activity, acting on the CH-CH group of donors, binding, catalytic activity;P:microsporogenesis, metabolic process;C:cellular_component unknown;MBPOFO.I.C.G.H.G.
28.999.725.6At1g24430839059transferase/ transferase, transferring acyl groups other than amino-acyl groupsF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:N-terminal protein myristoylation;C:cellular_component unknown;PFO.I.C.G.H.G.
28.899.735.4At5g54040835487DC1 domain-containing proteinF:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMOFO.I.C.G.H.G.
28.799.78.1At4g25330828636unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
28.499.714.7At5g40990834101GLIP1 (GDSL LIPASE1)Component of plant resistance. Contains lipase signature motif and GDSL domain. Directly interferes with the fungal infection process by acting on fungal cell walls through its action as a antimicrobial compound. Critical component for both local and systemic resistance responses in the incompatible interaction with Alternaria brassicicola in the ethylene-dependent pathway.O.I.C.G.H.G.
28.299.774.7At5g37690833748GDSL-motif lipase/hydrolase family proteinF:lipase activity, hydrolase activity, acting on ester bonds;P:lipid metabolic process;C:endomembrane system;PBFOMO.I.C.G.H.G.
28.299.711.2At1g13330837893-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBFAPVO.I.C.G.H.G.
28.099.778.1At3g46900823843COPT2encodes a member of copper transporter family and functionally complements a high affinity copper transporter mutant in yeastO.I.C.G.H.G.
28.099.740.4At4g22960828395unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPBO.I.C.G.H.G.
28.099.735.9At3g45730823715unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
27.699.7148.5At2g18370816352protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinPredicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.O.I.C.G.H.G.
27.599.757.6At5g47050834751protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:unknown;C:unknown;MPOVFBAO.I.C.G.H.G.
27.199.7158.4At5g66690836802UGT72E2UGT72E2 is an UDPG:coniferyl alcohol glucosyltransferase which glucosylates sinapyl- and coniferyl aldehydes as well as sinapyl- and coniferyl alcohol. The enzyme is thought to be involved in lignin metabolism. A knockdown mutant line (72E2KD) was obtained using RNAi silencing. A twofold reduction in coniferyl alcohol 4-O-glucoside and sinapyl alcohol 4-O-glucoside was detected in this line compared to wildtype. In comparison, both knockout and knockdown lines of UGT72E1 and UGT72E3, respectively, failed to display the same reduction in phenylpropanoid 4-O-glucosides.O.I.C.G.H.G.
26.799.7341.9At3g27060822324TSO2 (TSO meaning 'ugly' in Chinese)Encodes one of the 3 ribonucleotide reductase (RNR) small subunit genes. TSO2 transcription occurs predominantly at the S-phase of the cell cycle and its expression pattern is consistent with its role in dNDP biosynthesis during DNA replication in actively dividing cells. Critical for cell cycle progression, DNA damage repair and plant development.O.I.C.G.H.G.
25.799.77.2At5g49110834970unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;BMOFPVO.I.C.G.H.G.
25.699.752.1At1g19250838508FMO1 (FLAVIN-DEPENDENT MONOOXYGENASE 1)FMO1 is required for full expression of TIR-NB-LRR–conditioned resistance to avirulent pathogens and for basal resistance to invasive virulent pathogens. Functions in an EDS1-regulated but SA-independent mechanism that promotes resistance and cell death at pathogen infection sites.O.I.C.G.H.G.
25.699.735.8At4g14060827042major latex protein-related / MLP-relatedF:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;PO.I.C.G.H.G.
25.699.718.8At1g78990844239transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFBO.I.C.G.H.G.
25.599.726.8At3g15240820755--O.I.C.G.H.G.
25.199.686.7At5g58860836003CYP86A1 (CYTOCHROME P450 86 A1)Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed significantly only in root tissue.O.I.C.G.H.G.
24.999.652.4At2g18140816327peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:cell wall;PFOBMO.I.C.G.H.G.
24.799.619.1At4g15380827204CYP705A4member of CYP705AO.I.C.G.H.G.
24.499.617.5At1g55940842045CYP708A1member of CYP708AO.I.C.G.H.G.
24.299.616.4At4g19130827651DNA binding / nucleic acid binding / zinc ion bindingF:DNA binding, zinc ion binding, nucleic acid binding;P:DNA replication;C:nucleus;MPOFAO.I.C.G.H.G.
23.999.618.4At4g00670828034DNA bindingF:DNA binding;P:unknown;C:unknown;POFMO.I.C.G.H.G.
23.899.649.0At3g58810825050MTPA2 (METAL TOLERANCE PROTEIN A2)Member of Zinc transporter (ZAT) family. Contributes to basic cellular Zn tolerance and controls Zn partitioning, particularly under conditions of high rates of Zn influx into the root symplasm. Localizes to the vacuolar membrane.O.I.C.G.H.G.
23.899.623.1At5g20850832208ATRAD51Encodes a homolog of yeast RAD51. Its mRNA is most abundant in early flower buds and is expressed at high levels in exponentially growing cells in suspension cultures and is induced in response to gamma radiation.O.I.C.G.H.G.
23.499.6117.7At2g23540816886GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOMO.I.C.G.H.G.
23.499.6111.0At5g09480830807hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OBMFPVAO.I.C.G.H.G.
22.699.621.6At2g18190816332AAA-type ATPase family proteinF:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:response to salt stress;C:endomembrane system;BOMFPAVO.I.C.G.H.G.
22.599.624.9At5g493503771473unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBOPFVAO.I.C.G.H.G.
22.399.615.1At2g47560819369zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVO.I.C.G.H.G.
22.299.640.6At2g35380818105peroxidase 20 (PER20) (P20)F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBO.I.C.G.H.G.
21.899.650.0At4g01390828075-F:molecular_function unknown;P:biological_process unknown;C:unknown;POO.I.C.G.H.G.
21.699.650.6At1g51830841610ATP binding / kinase/ protein serine/threonine kinaseF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:cellular_component unknown;PMOBFVAO.I.C.G.H.G.
21.499.672.0At2g30360817586SIP4 (SOS3-INTERACTING PROTEIN 4)Encodes a SOS2-like protein kinase that is a member of the CBL-interacting protein kinase family.Loss of function mutants show a decrease in sensitivity to high pH.Phosphorylates AHA2, a plasma membrane H+ ATPase.This phosphorylation appears to regulate the activity of the proton transporter.O.I.C.G.H.G.
21.299.621.9At4g13280826958TPS12 (TERPENOID SYNTHASE 12)Catalyzes the conversion of farnesyl diphosphate to (Z)-gamma-bisabolene and the additional minor products E-nerolidol and alpha-bisabolol. Expressed in cortex and sub-epidermal layers of roots, leaf hydathodes and flower stigmata. Induced by wounding.O.I.C.G.H.G.
21.199.629.6At3g27070822325TOM20-1 (translocase outer membrane 20-1)Form of TOM20, which is a component of the TOM complex, involved in transport of nuclear-encoded mitochondrial proteinsO.I.C.G.H.G.
21.199.610.1At3g12220820402scpl16 (serine carboxypeptidase-like 16)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBOO.I.C.G.H.G.
21.099.634.7At4g26470828753calcium ion bindingF:calcium ion binding;P:N-terminal protein myristoylation;C:cellular_component unknown;MPOFBO.I.C.G.H.G.
20.899.618.9At1g05700837077leucine-rich repeat protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
20.499.6132.1At1g18980838479germin-like protein, putativeF:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PBFOO.I.C.G.H.G.
20.399.660.0At5g44550834482integral membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
20.399.621.9At2g18600816375RUB1-conjugating enzyme, putativeF:ubiquitin-protein ligase activity, small conjugating protein ligase activity, acid-amino acid ligase activity, ATP binding;P:regulation of protein metabolic process, protein modification process, post-translational protein modification;C:cellular_component unknown;MFOPVO.I.C.G.H.G.
20.399.618.1At1g10050837540glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing proteinEncodes a putative glycosyl hydrolase family 10 protein (xylanase).O.I.C.G.H.G.
20.299.621.6At4g37730829929AtbZIP7 (Arabidopsis thaliana basic leucine-zipper 7)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMOFBO.I.C.G.H.G.
20.099.619.2At4g11880826795AGL14 (agamous-like 14)AGL12, AGL14, and AGL17 are all preferentially expressed in root tissues and therefore represent the only characterized MADS box genes expressed in roots.O.I.C.G.H.G.
19.999.666.0At5g24380832509YSL2 (YELLOW STRIPE LIKE 2)closest Arabidopsis homolog of Zea maize metal-phytosiderophore/metal-nicotianamine transporter ZmYS1O.I.C.G.H.G.
19.899.619.3At3g46270823772receptor protein kinase-relatedF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MPBOFVAO.I.C.G.H.G.
19.599.624.6At3g44550823580FAR5 (FATTY ACID REDUCTASE 5)F:oxidoreductase activity, acting on the CH-CH group of donors, binding, catalytic activity;P:microsporogenesis, metabolic process;C:cellular_component unknown;MBFOPAO.I.C.G.H.G.
19.499.6220.9At3g13610820564oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, dioxygenase activity;P:coumarin biosynthetic process, response to cyclopentenone, hydrogen peroxide-mediated programmed cell death, secondary metabolic process;C:cellular_component unknown;POBFMO.I.C.G.H.G.
19.399.652.5At2g19580816477TET2 (TETRASPANIN2)Member of TETRASPANIN familyO.I.C.G.H.G.
19.399.615.5At3g47050823858glycosyl hydrolase family 3 proteinF:hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:vacuole;BOFPAMO.I.C.G.H.G.
19.299.689.1At4g01450828176nodulin MtN21 family proteinF:unknown;P:unknown;C:endomembrane system, membrane;PBOMO.I.C.G.H.G.
19.099.535.5At4g24140828514hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:unknown;C:endomembrane system;BOMPFAVO.I.C.G.H.G.
18.999.523.8At1g35250840414thioesterase family proteinF:hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity;P:biological_process unknown;C:cellular_component unknown;BOPAO.I.C.G.H.G.
18.899.539.8At4g05200825868protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
18.799.537.1At1g01190839233CYP78A8member of CYP78AO.I.C.G.H.G.
18.399.564.6At3g26470822252-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
18.399.517.5At5g49780835041ATP binding / kinase/ protein serine/threonine kinaseF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:unknown;MPOBFVAO.I.C.G.H.G.
18.399.515.8At3g57380824905transferase, transferring glycosyl groupsF:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:cellular_component unknown;PMOBFO.I.C.G.H.G.
18.199.519.1At1g19230838506respiratory burst oxidase protein E (RbohE) / NADPH oxidaseF:in 7 functions;P:defense response;C:integral to membrane, membrane;MFPBOAO.I.C.G.H.G.



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