CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM131377

Assay name AtGen_6-5521_Genotoxicstress-Roots-12.0h_Rep1

GSE experiment GSE5625: AtGenExpress: Stress Treatments (Genotoxic stress)

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
510.6 100.0 94.9 At4g31970 829327 CYP82C2 member of CYP82C O.I. C.G. H.G.
252.7 100.0 201.0 At2g30750 817626 CYP71A12 (cytochrome P450, family 71, subfamily A, polypeptide 12) putative cytochrome P450 O.I. C.G. H.G.
230.3 100.0 41.9 At5g40990 834101 GLIP1 (GDSL LIPASE1) Component of plant resistance. Contains lipase signature motif and GDSL domain. Directly interferes with the fungal infection process by acting on fungal cell walls through its action as a antimicrobial compound. Critical component for both local and systemic resistance responses in the incompatible interaction with Alternaria brassicicola in the ethylene-dependent pathway. O.I. C.G. H.G.
218.7 100.0 167.1 At5g38910 833883 germin-like protein, putative F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFOB O.I. C.G. H.G.
113.4 99.9 42.2 At1g08260 837346 TIL1 (TILTED 1) Similar to POL2A, DNA polymerase epsilon catalytic subunit. Essential for Arabidopsis growth. Null homozygotes are embryo lethal, partial loss of function alleles show embryo patterning defects such as root pole displacement. Delayed progression through cell cycle results in embryos with smaller numbers of larger cells. O.I. C.G. H.G.
102.8 99.9 31.4 At5g03780 831726 TRFL10 (TRF-LIKE 10) Encodes a protein whose sequence is similar to human telomere proteins. This belongs to TRFL family 2, which do not show DNA binding in vitro. O.I. C.G. H.G.
98.6 99.9 98.0 At5g48720 834930 XRI1 (X-RAY INDUCED TRANSCRIPT 1) Encodes XRI1 (X-ray induced 1). Required for post-meiotic stages of pollen development and male and female meiosis. Maybe required for meiotic DNA repair. Inducible by X-ray. Homozygous xri1 mutants are sterile due to extensive chromosome fragmentation. O.I. C.G. H.G.
95.0 99.9 87.6 At4g02390 828049 APP (ARABIDOPSIS POLY(ADP-RIBOSE) POLYMERASE) Encodes a DNA dependent nuclear poly (ADP-ribose) polymerase (E.C.2.4.2.30), thought to be involved in post-translational modification . O.I. C.G. H.G.
79.2 99.9 59.3 At5g24280 832495 - F:unknown;P:unknown;C:unknown;PMOBF O.I. C.G. H.G.
76.0 99.9 145.0 At5g48020 834853 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPFM O.I. C.G. H.G.
75.6 99.9 121.4 At2g15120 3768033 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
69.4 99.9 18.3 At1g53990 841837 GLIP3 Contains lipase signature motif and GDSL domain. O.I. C.G. H.G.
67.2 99.8 43.1 At5g49350 3771473 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBOPFVA O.I. C.G. H.G.
65.5 99.8 30.7 At5g40840 834084 SYN2 Cohesion family protein SYN2 (SYN2). O.I. C.G. H.G.
61.2 99.8 29.1 At1g78990 844239 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFB O.I. C.G. H.G.
59.6 99.8 208.7 At3g07800 819971 thymidine kinase, putative F:thymidine kinase activity, ATP binding;P:pyrimidine deoxyribonucleoside interconversion, anaerobic respiration;C:cellular_component unknown;BOVMPAF O.I. C.G. H.G.
58.7 99.8 44.3 At2g43000 818902 anac042 (Arabidopsis NAC domain containing protein 42) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P O.I. C.G. H.G.
58.6 99.8 164.6 At1g18970 838478 GLP4 (GERMIN-LIKE PROTEIN 4) Encodes a germin-like protein with possible oxalate oxidase activity (based on GenBank record). O.I. C.G. H.G.
53.7 99.8 46.6 At2g47200 819333 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
52.8 99.8 24.9 At1g26410 839183 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:cellular_component unknown;FBPOAM O.I. C.G. H.G.
45.6 99.8 49.8 At2g28570 817405 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
45.5 99.8 41.1 At4g21070 827854 ATBRCA1 Encodes AtBRCA1, an ortholog of the human breast cancer susceptibility gene 1. Contains one N-terminal RING finger, two C-terminal BRCT and the p300/CBP interacting domain. Strongly induced by gamma rays, consistent with a putative role in DNA repair and in cell cycle control. O.I. C.G. H.G.
45.1 99.8 94.6 At5g37690 833748 GDSL-motif lipase/hydrolase family protein F:lipase activity, hydrolase activity, acting on ester bonds;P:lipid metabolic process;C:endomembrane system;PBFOM O.I. C.G. H.G.
43.5 99.8 55.7 At1g02220 839476 ANAC003 (Arabidopsis NAC domain containing protein 3) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PF O.I. C.G. H.G.
41.6 99.8 52.0 At1g69920 843328 ATGSTU12 (GLUTATHIONE S-TRANSFERASE TAU 12) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
41.5 99.8 19.8 At1g74080 843748 MYB122 (MYB DOMAIN PROTEIN 122) Encodes a putative transcription factor, member of the R2R3 factor gene family (MYB122). O.I. C.G. H.G.
39.6 99.8 180.2 At1g55020 841944 LOX1 lipoxygenase, a defense gene conferring resistance Xanthomonas campestris O.I. C.G. H.G.
38.7 99.8 14.2 At5g53990 835482 glycosyltransferase family protein F:transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBOFV O.I. C.G. H.G.
38.3 99.8 150.8 At2g23540 816886 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM O.I. C.G. H.G.
37.7 99.7 52.8 At2g35380 818105 peroxidase 20 (PER20) (P20) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB O.I. C.G. H.G.
37.6 99.7 46.1 At1g26240 839165 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MPBOFVA O.I. C.G. H.G.
36.0 99.7 26.5 At2g45460 819154 forkhead-associated domain-containing protein / FHA domain-containing protein F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:chloroplast;MOBFPAV O.I. C.G. H.G.
34.6 99.7 63.9 At1g51830 841610 ATP binding / kinase/ protein serine/threonine kinase F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:cellular_component unknown;PMOBFVA O.I. C.G. H.G.
34.2 99.7 22.0 At4g00670 828034 DNA binding F:DNA binding;P:unknown;C:unknown;POFM O.I. C.G. H.G.
34.0 99.7 45.3 At4g37290 829883 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
33.5 99.7 107.0 At5g39110 833904 germin-like protein, putative F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFO O.I. C.G. H.G.
33.4 99.7 193.6 At2g24180 816952 CYP71B6 (CYTOCHROME P450 71B6) cytochrome P450 monooxygenase O.I. C.G. H.G.
32.9 99.7 19.1 At4g19130 827651 DNA binding / nucleic acid binding / zinc ion binding F:DNA binding, zinc ion binding, nucleic acid binding;P:DNA replication;C:nucleus;MPOFA O.I. C.G. H.G.
32.8 99.7 76.3 At5g44550 834482 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
32.6 99.7 30.4 At3g15240 820755 - - O.I. C.G. H.G.
32.3 99.7 31.4 At5g59530 836072 2-oxoglutarate-dependent dioxygenase, putative F:transferase activity, transferring glycosyl groups;P:unknown;C:unknown;POBFM O.I. C.G. H.G.
31.9 99.7 106.8 At1g26380 839180 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAM O.I. C.G. H.G.
31.7 99.7 118.2 At5g57220 835828 CYP81F2 member of CYP81F, involved in glucosinolate metabolism. Mutants had impaired resistance to fungi. O.I. C.G. H.G.
31.7 99.7 97.3 At5g58860 836003 CYP86A1 (CYTOCHROME P450 86 A1) Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed significantly only in root tissue. O.I. C.G. H.G.
31.2 99.7 39.5 At2g31320 817690 PARP2 (POLY(ADP-RIBOSE) POLYMERASE 2) Abiotic Stress-inducible gene. O.I. C.G. H.G.
30.9 99.7 7.7 At3g21850 821739 ASK9 (ARABIDOPSIS SKP1-LIKE 9) one of Arabidopsis SKP1 homologues O.I. C.G. H.G.
30.8 99.7 211.4 At2g38860 818470 YLS5 Encodes protease I (pfpI)-like protein YLS5. O.I. C.G. H.G.
30.6 99.7 118.7 At3g28510 822481 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;OMBFPAV O.I. C.G. H.G.
30.6 99.7 63.2 At3g44540 823579 FAR4 (FATTY ACID REDUCTASE 4) F:oxidoreductase activity, acting on the CH-CH group of donors, binding, catalytic activity;P:microsporogenesis, metabolic process;C:cellular_component unknown;MBPOF O.I. C.G. H.G.
30.5 99.7 58.0 At2g18140 816327 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:cell wall;PFOBM O.I. C.G. H.G.
30.0 99.7 32.8 At1g68880 843221 AtbZIP (Arabidopsis thaliana basic leucine-zipper 8) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, chloroplast;PMFO O.I. C.G. H.G.
29.6 99.7 40.8 At4g37490 829904 CYCB1 Cyclin-dependent protein kinase CYCB1;1. Functions as an effector of growth control at G2/M. Regulated by TCP20. O.I. C.G. H.G.
29.6 99.7 32.6 At1g49960 841419 xanthine/uracil permease family protein F:transmembrane transporter activity;P:transport;C:membrane;BOMPFAV O.I. C.G. H.G.
28.8 99.7 41.1 At5g06730 830562 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:plasma membrane;PFOBM O.I. C.G. H.G.
28.6 99.7 21.9 At5g49780 835041 ATP binding / kinase/ protein serine/threonine kinase F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:unknown;MPOBFVA O.I. C.G. H.G.
28.4 99.7 54.9 At1g19250 838508 FMO1 (FLAVIN-DEPENDENT MONOOXYGENASE 1) FMO1 is required for full expression of TIR-NB-LRR�conditioned resistance to avirulent pathogens and for basal resistance to invasive virulent pathogens. Functions in an EDS1-regulated but SA-independent mechanism that promotes resistance and cell death at pathogen infection sites. O.I. C.G. H.G.
27.9 99.7 17.0 At1g61500 842444 S-locus protein kinase, putative F:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
27.9 99.7 14.8 At2g48090 819421 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
27.8 99.7 28.6 At5g49770 835040 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
27.8 99.7 27.1 At5g66130 836745 ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE) Encodes a homolog to yeast RAD17. Involved in the regulation of DNA damage repair and homologous recombination. Mutant has increased sensitivity to MMS and increased telomere lengths. O.I. C.G. H.G.
27.7 99.7 42.8 At4g24140 828514 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:endomembrane system;BOMPFAV O.I. C.G. H.G.
27.6 99.7 22.6 At4g11880 826795 AGL14 (agamous-like 14) AGL12, AGL14, and AGL17 are all preferentially expressed in root tissues and therefore represent the only characterized MADS box genes expressed in roots. O.I. C.G. H.G.
27.5 99.7 21.0 At1g10050 837540 glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein Encodes a putative glycosyl hydrolase family 10 protein (xylanase). O.I. C.G. H.G.
27.3 99.7 205.5 At4g39950 830154 CYP79B2 Belongs to cytochrome P450 and is involved in tryptophan metabolism. Converts Trp to indo-3-acetaldoxime (IAOx), a precursor to IAA and indole glucosinolates. O.I. C.G. H.G.
26.7 99.7 26.6 At5g06740 830563 lectin protein kinase family protein F:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
26.4 99.7 19.5 At4g35740 829727 RecQl3 F:helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding;P:DNA recombination;C:cellular_component unknown;BOMFPAV O.I. C.G. H.G.
26.3 99.7 129.4 At3g09220 820078 LAC7 (laccase 7) putative laccase, a member of laccase family of genes (17 members in Arabidopsis). O.I. C.G. H.G.
26.2 99.7 39.1 At4g22960 828395 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPB O.I. C.G. H.G.
25.4 99.6 18.7 At3g57380 824905 transferase, transferring glycosyl groups F:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:cellular_component unknown;PMOBF O.I. C.G. H.G.
25.2 99.6 26.7 At1g24150 839028 FH4 (FORMIN HOMOLOGUE 4) Encodes a group I formin. Localized to cell junctions. Polymerizes actin. Binds profilin. O.I. C.G. H.G.
25.1 99.6 114.9 At5g09480 830807 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OBMFPVA O.I. C.G. H.G.
24.7 99.6 112.7 At2g07751 815347 NADH-ubiquinone oxidoreductase chain 3, putative F:NADH dehydrogenase (ubiquinone) activity;P:mitochondrial electron transport, NADH to ubiquinone;C:endomembrane system;MOBPFA O.I. C.G. H.G.
24.1 99.6 20.6 At5g67430 836879 GCN5-related N-acetyltransferase (GNAT) family protein F:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;PBA O.I. C.G. H.G.
24.0 99.6 59.8 At5g63560 836475 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PF O.I. C.G. H.G.
23.3 99.6 22.9 At5g20850 832208 ATRAD51 Encodes a homolog of yeast RAD51. Its mRNA is most abundant in early flower buds and is expressed at high levels in exponentially growing cells in suspension cultures and is induced in response to gamma radiation. O.I. C.G. H.G.
23.1 99.6 51.0 At1g07500 837264 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
23.0 99.6 52.9 At1g74590 843799 GSTU10 (GLUTATHIONE S-TRANSFERASE TAU 10) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
23.0 99.6 23.8 At1g36640 840572 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
23.0 99.6 19.1 At3g55910 824757 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
22.8 99.6 9.0 At2g23830 816915 vesicle-associated membrane protein, putative / VAMP, putative F:structural molecule activity;P:biological_process unknown;C:cellular_component unknown;MPFO O.I. C.G. H.G.
22.7 99.6 40.9 At1g01190 839233 CYP78A8 member of CYP78A O.I. C.G. H.G.
22.7 99.6 18.3 At4g15380 827204 CYP705A4 member of CYP705A O.I. C.G. H.G.
22.6 99.6 50.9 At4g08780 826448 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:vacuole;POFM O.I. C.G. H.G.
22.4 99.6 147.0 At5g59520 836071 ZIP2 encodes a metal ion transporter whose expression is regulated by copper. O.I. C.G. H.G.
22.2 99.6 312.2 At3g27060 822324 TSO2 (TSO meaning 'ugly' in Chinese) Encodes one of the 3 ribonucleotide reductase (RNR) small subunit genes. TSO2 transcription occurs predominantly at the S-phase of the cell cycle and its expression pattern is consistent with its role in dNDP biosynthesis during DNA replication in actively dividing cells. Critical for cell cycle progression, DNA damage repair and plant development. O.I. C.G. H.G.
21.8 99.6 38.3 At1g61560 842450 MLO6 (MILDEW RESISTANCE LOCUS O 6) A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO6 belongs to the clade IV, with AtMLO2, AtMLO3 and AtMLO12. The gene is expressed during early seedling growth, in roots and lateral root primordia, in flower and fruit abscission zone, in vascular system of cotyledons, young leaves and petals, in mature rosette leaves, in anthers, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s). O.I. C.G. H.G.
21.5 99.6 114.6 At4g36430 829795 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to other organism;C:cell wall;PFOBM O.I. C.G. H.G.
21.5 99.6 13.8 At4g04990 825841 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPOFBV O.I. C.G. H.G.
21.4 99.6 91.6 At1g56320 842085 unknown protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P O.I. C.G. H.G.
21.4 99.6 26.6 At5g48175 834870 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
21.0 99.6 19.7 At2g26820 817223 ATPP2-A3 (Phloem protein 2-A3) F:carbohydrate binding;P:response to bacterium;C:unknown;MOBPFVA O.I. C.G. H.G.
20.9 99.6 7.6 At5g37840 833762 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
20.4 99.6 9.5 At1g13330 837893 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBFAPV O.I. C.G. H.G.
20.2 99.6 38.4 At4g35380 829691 guanine nucleotide exchange family protein F:binding, ARF guanyl-nucleotide exchange factor activity, guanyl-nucleotide exchange factor activity;P:regulation of ARF protein signal transduction;C:intracellular;MFOPBA O.I. C.G. H.G.
20.0 99.6 130.9 At1g18980 838479 germin-like protein, putative F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PBFO O.I. C.G. H.G.
19.9 99.6 29.4 At5g54040 835487 DC1 domain-containing protein F:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMOF O.I. C.G. H.G.
19.9 99.6 21.2 At4g13280 826958 TPS12 (TERPENOID SYNTHASE 12) Catalyzes the conversion of farnesyl diphosphate to (Z)-gamma-bisabolene and the additional minor products E-nerolidol and alpha-bisabolol. Expressed in cortex and sub-epidermal layers of roots, leaf hydathodes and flower stigmata. Induced by wounding. O.I. C.G. H.G.
19.6 99.6 28.3 At3g04570 819613 DNA-binding protein-related F:unknown;P:biological_process unknown;C:unknown;BPMOFVA O.I. C.G. H.G.
19.5 99.6 38.9 At2g18360 816351 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:endomembrane system;BOMPFA O.I. C.G. H.G.
19.4 99.6 75.6 At5g37990 833778 S-adenosylmethionine-dependent methyltransferase/ methyltransferase F:S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity;P:biological_process unknown;C:endomembrane system;POBMF O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
510.6	100.0	94.9	At4g31970	829327	CYP82C2	member of CYP82C	O.I.	C.G.	H.G.
252.7	100.0	201.0	At2g30750	817626	CYP71A12 (cytochrome P450, family 71, subfamily A, polypeptide 12)	putative cytochrome P450	O.I.	C.G.	H.G.
230.3	100.0	41.9	At5g40990	834101	GLIP1 (GDSL LIPASE1)	Component of plant resistance. Contains lipase signature motif and GDSL domain. Directly interferes with the fungal infection process by acting on fungal cell walls through its action as a antimicrobial compound. Critical component for both local and systemic resistance responses in the incompatible interaction with Alternaria brassicicola in the ethylene-dependent pathway.	O.I.	C.G.	H.G.
218.7	100.0	167.1	At5g38910	833883	germin-like protein, putative	F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFOB	O.I.	C.G.	H.G.
113.4	99.9	42.2	At1g08260	837346	TIL1 (TILTED 1)	Similar to POL2A, DNA polymerase epsilon catalytic subunit. Essential for Arabidopsis growth. Null homozygotes are embryo lethal, partial loss of function alleles show embryo patterning defects such as root pole displacement. Delayed progression through cell cycle results in embryos with smaller numbers of larger cells.	O.I.	C.G.	H.G.
102.8	99.9	31.4	At5g03780	831726	TRFL10 (TRF-LIKE 10)	Encodes a protein whose sequence is similar to human telomere proteins. This belongs to TRFL family 2, which do not show DNA binding in vitro.	O.I.	C.G.	H.G.
98.6	99.9	98.0	At5g48720	834930	XRI1 (X-RAY INDUCED TRANSCRIPT 1)	Encodes XRI1 (X-ray induced 1). Required for post-meiotic stages of pollen development and male and female meiosis. Maybe required for meiotic DNA repair. Inducible by X-ray. Homozygous xri1 mutants are sterile due to extensive chromosome fragmentation.	O.I.	C.G.	H.G.
95.0	99.9	87.6	At4g02390	828049	APP (ARABIDOPSIS POLY(ADP-RIBOSE) POLYMERASE)	Encodes a DNA dependent nuclear poly (ADP-ribose) polymerase (E.C.2.4.2.30), thought to be involved in post-translational modification .	O.I.	C.G.	H.G.
79.2	99.9	59.3	At5g24280	832495	-	F:unknown;P:unknown;C:unknown;PMOBF	O.I.	C.G.	H.G.
76.0	99.9	145.0	At5g48020	834853	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPFM	O.I.	C.G.	H.G.
75.6	99.9	121.4	At2g15120	3768033	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
69.4	99.9	18.3	At1g53990	841837	GLIP3	Contains lipase signature motif and GDSL domain.	O.I.	C.G.	H.G.
67.2	99.8	43.1	At5g49350	3771473	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBOPFVA	O.I.	C.G.	H.G.
65.5	99.8	30.7	At5g40840	834084	SYN2	Cohesion family protein SYN2 (SYN2).	O.I.	C.G.	H.G.
61.2	99.8	29.1	At1g78990	844239	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFB	O.I.	C.G.	H.G.
59.6	99.8	208.7	At3g07800	819971	thymidine kinase, putative	F:thymidine kinase activity, ATP binding;P:pyrimidine deoxyribonucleoside interconversion, anaerobic respiration;C:cellular_component unknown;BOVMPAF	O.I.	C.G.	H.G.
58.7	99.8	44.3	At2g43000	818902	anac042 (Arabidopsis NAC domain containing protein 42)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P	O.I.	C.G.	H.G.
58.6	99.8	164.6	At1g18970	838478	GLP4 (GERMIN-LIKE PROTEIN 4)	Encodes a germin-like protein with possible oxalate oxidase activity (based on GenBank record).	O.I.	C.G.	H.G.
53.7	99.8	46.6	At2g47200	819333	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
52.8	99.8	24.9	At1g26410	839183	FAD-binding domain-containing protein	F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:cellular_component unknown;FBPOAM	O.I.	C.G.	H.G.
45.6	99.8	49.8	At2g28570	817405	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
45.5	99.8	41.1	At4g21070	827854	ATBRCA1	Encodes AtBRCA1, an ortholog of the human breast cancer susceptibility gene 1. Contains one N-terminal RING finger, two C-terminal BRCT and the p300/CBP interacting domain. Strongly induced by gamma rays, consistent with a putative role in DNA repair and in cell cycle control.	O.I.	C.G.	H.G.
45.1	99.8	94.6	At5g37690	833748	GDSL-motif lipase/hydrolase family protein	F:lipase activity, hydrolase activity, acting on ester bonds;P:lipid metabolic process;C:endomembrane system;PBFOM	O.I.	C.G.	H.G.
43.5	99.8	55.7	At1g02220	839476	ANAC003 (Arabidopsis NAC domain containing protein 3)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
41.6	99.8	52.0	At1g69920	843328	ATGSTU12 (GLUTATHIONE S-TRANSFERASE TAU 12)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
41.5	99.8	19.8	At1g74080	843748	MYB122 (MYB DOMAIN PROTEIN 122)	Encodes a putative transcription factor, member of the R2R3 factor gene family (MYB122).	O.I.	C.G.	H.G.
39.6	99.8	180.2	At1g55020	841944	LOX1	lipoxygenase, a defense gene conferring resistance Xanthomonas campestris	O.I.	C.G.	H.G.
38.7	99.8	14.2	At5g53990	835482	glycosyltransferase family protein	F:transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBOFV	O.I.	C.G.	H.G.
38.3	99.8	150.8	At2g23540	816886	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM	O.I.	C.G.	H.G.
37.7	99.7	52.8	At2g35380	818105	peroxidase 20 (PER20) (P20)	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB	O.I.	C.G.	H.G.
37.6	99.7	46.1	At1g26240	839165	proline-rich extensin-like family protein	F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MPBOFVA	O.I.	C.G.	H.G.
36.0	99.7	26.5	At2g45460	819154	forkhead-associated domain-containing protein / FHA domain-containing protein	F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:chloroplast;MOBFPAV	O.I.	C.G.	H.G.
34.6	99.7	63.9	At1g51830	841610	ATP binding / kinase/ protein serine/threonine kinase	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:cellular_component unknown;PMOBFVA	O.I.	C.G.	H.G.
34.2	99.7	22.0	At4g00670	828034	DNA binding	F:DNA binding;P:unknown;C:unknown;POFM	O.I.	C.G.	H.G.
34.0	99.7	45.3	At4g37290	829883	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
33.5	99.7	107.0	At5g39110	833904	germin-like protein, putative	F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFO	O.I.	C.G.	H.G.
33.4	99.7	193.6	At2g24180	816952	CYP71B6 (CYTOCHROME P450 71B6)	cytochrome P450 monooxygenase	O.I.	C.G.	H.G.
32.9	99.7	19.1	At4g19130	827651	DNA binding / nucleic acid binding / zinc ion binding	F:DNA binding, zinc ion binding, nucleic acid binding;P:DNA replication;C:nucleus;MPOFA	O.I.	C.G.	H.G.
32.8	99.7	76.3	At5g44550	834482	integral membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
32.6	99.7	30.4	At3g15240	820755	-	-	O.I.	C.G.	H.G.
32.3	99.7	31.4	At5g59530	836072	2-oxoglutarate-dependent dioxygenase, putative	F:transferase activity, transferring glycosyl groups;P:unknown;C:unknown;POBFM	O.I.	C.G.	H.G.
31.9	99.7	106.8	At1g26380	839180	FAD-binding domain-containing protein	F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAM	O.I.	C.G.	H.G.
31.7	99.7	118.2	At5g57220	835828	CYP81F2	member of CYP81F, involved in glucosinolate metabolism. Mutants had impaired resistance to fungi.	O.I.	C.G.	H.G.
31.7	99.7	97.3	At5g58860	836003	CYP86A1 (CYTOCHROME P450 86 A1)	Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed significantly only in root tissue.	O.I.	C.G.	H.G.
31.2	99.7	39.5	At2g31320	817690	PARP2 (POLY(ADP-RIBOSE) POLYMERASE 2)	Abiotic Stress-inducible gene.	O.I.	C.G.	H.G.
30.9	99.7	7.7	At3g21850	821739	ASK9 (ARABIDOPSIS SKP1-LIKE 9)	one of Arabidopsis SKP1 homologues	O.I.	C.G.	H.G.
30.8	99.7	211.4	At2g38860	818470	YLS5	Encodes protease I (pfpI)-like protein YLS5.	O.I.	C.G.	H.G.
30.6	99.7	118.7	At3g28510	822481	AAA-type ATPase family protein	F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;OMBFPAV	O.I.	C.G.	H.G.
30.6	99.7	63.2	At3g44540	823579	FAR4 (FATTY ACID REDUCTASE 4)	F:oxidoreductase activity, acting on the CH-CH group of donors, binding, catalytic activity;P:microsporogenesis, metabolic process;C:cellular_component unknown;MBPOF	O.I.	C.G.	H.G.
30.5	99.7	58.0	At2g18140	816327	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:cell wall;PFOBM	O.I.	C.G.	H.G.
30.0	99.7	32.8	At1g68880	843221	AtbZIP (Arabidopsis thaliana basic leucine-zipper 8)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, chloroplast;PMFO	O.I.	C.G.	H.G.
29.6	99.7	40.8	At4g37490	829904	CYCB1	Cyclin-dependent protein kinase CYCB1;1. Functions as an effector of growth control at G2/M. Regulated by TCP20.	O.I.	C.G.	H.G.
29.6	99.7	32.6	At1g49960	841419	xanthine/uracil permease family protein	F:transmembrane transporter activity;P:transport;C:membrane;BOMPFAV	O.I.	C.G.	H.G.
28.8	99.7	41.1	At5g06730	830562	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:plasma membrane;PFOBM	O.I.	C.G.	H.G.
28.6	99.7	21.9	At5g49780	835041	ATP binding / kinase/ protein serine/threonine kinase	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:unknown;MPOBFVA	O.I.	C.G.	H.G.
28.4	99.7	54.9	At1g19250	838508	FMO1 (FLAVIN-DEPENDENT MONOOXYGENASE 1)	FMO1 is required for full expression of TIR-NB-LRR�conditioned resistance to avirulent pathogens and for basal resistance to invasive virulent pathogens. Functions in an EDS1-regulated but SA-independent mechanism that promotes resistance and cell death at pathogen infection sites.	O.I.	C.G.	H.G.
27.9	99.7	17.0	At1g61500	842444	S-locus protein kinase, putative	F:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
27.9	99.7	14.8	At2g48090	819421	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
27.8	99.7	28.6	At5g49770	835040	leucine-rich repeat transmembrane protein kinase, putative	F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
27.8	99.7	27.1	At5g66130	836745	ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE)	Encodes a homolog to yeast RAD17. Involved in the regulation of DNA damage repair and homologous recombination. Mutant has increased sensitivity to MMS and increased telomere lengths.	O.I.	C.G.	H.G.
27.7	99.7	42.8	At4g24140	828514	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:unknown;C:endomembrane system;BOMPFAV	O.I.	C.G.	H.G.
27.6	99.7	22.6	At4g11880	826795	AGL14 (agamous-like 14)	AGL12, AGL14, and AGL17 are all preferentially expressed in root tissues and therefore represent the only characterized MADS box genes expressed in roots.	O.I.	C.G.	H.G.
27.5	99.7	21.0	At1g10050	837540	glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein	Encodes a putative glycosyl hydrolase family 10 protein (xylanase).	O.I.	C.G.	H.G.
27.3	99.7	205.5	At4g39950	830154	CYP79B2	Belongs to cytochrome P450 and is involved in tryptophan metabolism. Converts Trp to indo-3-acetaldoxime (IAOx), a precursor to IAA and indole glucosinolates.	O.I.	C.G.	H.G.
26.7	99.7	26.6	At5g06740	830563	lectin protein kinase family protein	F:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
26.4	99.7	19.5	At4g35740	829727	RecQl3	F:helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding;P:DNA recombination;C:cellular_component unknown;BOMFPAV	O.I.	C.G.	H.G.
26.3	99.7	129.4	At3g09220	820078	LAC7 (laccase 7)	putative laccase, a member of laccase family of genes (17 members in Arabidopsis).	O.I.	C.G.	H.G.
26.2	99.7	39.1	At4g22960	828395	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPB	O.I.	C.G.	H.G.
25.4	99.6	18.7	At3g57380	824905	transferase, transferring glycosyl groups	F:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:cellular_component unknown;PMOBF	O.I.	C.G.	H.G.
25.2	99.6	26.7	At1g24150	839028	FH4 (FORMIN HOMOLOGUE 4)	Encodes a group I formin. Localized to cell junctions. Polymerizes actin. Binds profilin.	O.I.	C.G.	H.G.
25.1	99.6	114.9	At5g09480	830807	hydroxyproline-rich glycoprotein family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OBMFPVA	O.I.	C.G.	H.G.
24.7	99.6	112.7	At2g07751	815347	NADH-ubiquinone oxidoreductase chain 3, putative	F:NADH dehydrogenase (ubiquinone) activity;P:mitochondrial electron transport, NADH to ubiquinone;C:endomembrane system;MOBPFA	O.I.	C.G.	H.G.
24.1	99.6	20.6	At5g67430	836879	GCN5-related N-acetyltransferase (GNAT) family protein	F:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;PBA	O.I.	C.G.	H.G.
24.0	99.6	59.8	At5g63560	836475	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
23.3	99.6	22.9	At5g20850	832208	ATRAD51	Encodes a homolog of yeast RAD51. Its mRNA is most abundant in early flower buds and is expressed at high levels in exponentially growing cells in suspension cultures and is induced in response to gamma radiation.	O.I.	C.G.	H.G.
23.1	99.6	51.0	At1g07500	837264	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
23.0	99.6	52.9	At1g74590	843799	GSTU10 (GLUTATHIONE S-TRANSFERASE TAU 10)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
23.0	99.6	23.8	At1g36640	840572	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
23.0	99.6	19.1	At3g55910	824757	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
22.8	99.6	9.0	At2g23830	816915	vesicle-associated membrane protein, putative / VAMP, putative	F:structural molecule activity;P:biological_process unknown;C:cellular_component unknown;MPFO	O.I.	C.G.	H.G.
22.7	99.6	40.9	At1g01190	839233	CYP78A8	member of CYP78A	O.I.	C.G.	H.G.
22.7	99.6	18.3	At4g15380	827204	CYP705A4	member of CYP705A	O.I.	C.G.	H.G.
22.6	99.6	50.9	At4g08780	826448	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:vacuole;POFM	O.I.	C.G.	H.G.
22.4	99.6	147.0	At5g59520	836071	ZIP2	encodes a metal ion transporter whose expression is regulated by copper.	O.I.	C.G.	H.G.
22.2	99.6	312.2	At3g27060	822324	TSO2 (TSO meaning 'ugly' in Chinese)	Encodes one of the 3 ribonucleotide reductase (RNR) small subunit genes. TSO2 transcription occurs predominantly at the S-phase of the cell cycle and its expression pattern is consistent with its role in dNDP biosynthesis during DNA replication in actively dividing cells. Critical for cell cycle progression, DNA damage repair and plant development.	O.I.	C.G.	H.G.
21.8	99.6	38.3	At1g61560	842450	MLO6 (MILDEW RESISTANCE LOCUS O 6)	A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO6 belongs to the clade IV, with AtMLO2, AtMLO3 and AtMLO12. The gene is expressed during early seedling growth, in roots and lateral root primordia, in flower and fruit abscission zone, in vascular system of cotyledons, young leaves and petals, in mature rosette leaves, in anthers, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).	O.I.	C.G.	H.G.
21.5	99.6	114.6	At4g36430	829795	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to other organism;C:cell wall;PFOBM	O.I.	C.G.	H.G.
21.5	99.6	13.8	At4g04990	825841	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPOFBV	O.I.	C.G.	H.G.
21.4	99.6	91.6	At1g56320	842085	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
21.4	99.6	26.6	At5g48175	834870	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
21.0	99.6	19.7	At2g26820	817223	ATPP2-A3 (Phloem protein 2-A3)	F:carbohydrate binding;P:response to bacterium;C:unknown;MOBPFVA	O.I.	C.G.	H.G.
20.9	99.6	7.6	At5g37840	833762	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
20.4	99.6	9.5	At1g13330	837893	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBFAPV	O.I.	C.G.	H.G.
20.2	99.6	38.4	At4g35380	829691	guanine nucleotide exchange family protein	F:binding, ARF guanyl-nucleotide exchange factor activity, guanyl-nucleotide exchange factor activity;P:regulation of ARF protein signal transduction;C:intracellular;MFOPBA	O.I.	C.G.	H.G.
20.0	99.6	130.9	At1g18980	838479	germin-like protein, putative	F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PBFO	O.I.	C.G.	H.G.
19.9	99.6	29.4	At5g54040	835487	DC1 domain-containing protein	F:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMOF	O.I.	C.G.	H.G.
19.9	99.6	21.2	At4g13280	826958	TPS12 (TERPENOID SYNTHASE 12)	Catalyzes the conversion of farnesyl diphosphate to (Z)-gamma-bisabolene and the additional minor products E-nerolidol and alpha-bisabolol. Expressed in cortex and sub-epidermal layers of roots, leaf hydathodes and flower stigmata. Induced by wounding.	O.I.	C.G.	H.G.
19.6	99.6	28.3	At3g04570	819613	DNA-binding protein-related	F:unknown;P:biological_process unknown;C:unknown;BPMOFVA	O.I.	C.G.	H.G.
19.5	99.6	38.9	At2g18360	816351	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:unknown;C:endomembrane system;BOMPFA	O.I.	C.G.	H.G.
19.4	99.6	75.6	At5g37990	833778	S-adenosylmethionine-dependent methyltransferase/ methyltransferase	F:S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity;P:biological_process unknown;C:endomembrane system;POBMF	O.I.	C.G.	H.G.

Back to the CoP portal site

Back to the KAGIANA project homepage

GSM ID	GSM131377
Assay name	AtGen_6-5521_Genotoxicstress-Roots-12.0h_Rep1
GSE experiment	GSE5625: AtGenExpress: Stress Treatments (Genotoxic stress)

Microarray experiments to specifically-expressed genes

GSM ID GSM131377 Assay name AtGen_6-5521_Genotoxicstress-Roots-12.0h_Rep1 GSE experiment GSE5625: AtGenExpress: Stress Treatments (Genotoxic stress)

GSM ID GSM131377

Assay name AtGen_6-5521_Genotoxicstress-Roots-12.0h_Rep1

GSE experiment GSE5625: AtGenExpress: Stress Treatments (Genotoxic stress)