CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM131374

Assay name AtGen_6-5422_Genotoxicstress-Roots-6.0h_Rep2

GSE experiment GSE5625: AtGenExpress: Stress Treatments (Genotoxic stress)

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
135.1 99.9 114.7 At5g48720 834930 XRI1 (X-RAY INDUCED TRANSCRIPT 1) Encodes XRI1 (X-ray induced 1). Required for post-meiotic stages of pollen development and male and female meiosis. Maybe required for meiotic DNA repair. Inducible by X-ray. Homozygous xri1 mutants are sterile due to extensive chromosome fragmentation. O.I. C.G. H.G.
113.4 99.9 33.0 At5g03780 831726 TRFL10 (TRF-LIKE 10) Encodes a protein whose sequence is similar to human telomere proteins. This belongs to TRFL family 2, which do not show DNA binding in vitro. O.I. C.G. H.G.
102.7 99.9 274.1 At3g07800 819971 thymidine kinase, putative F:thymidine kinase activity, ATP binding;P:pyrimidine deoxyribonucleoside interconversion, anaerobic respiration;C:cellular_component unknown;BOVMPAF O.I. C.G. H.G.
94.6 99.9 87.4 At4g02390 828049 APP (ARABIDOPSIS POLY(ADP-RIBOSE) POLYMERASE) Encodes a DNA dependent nuclear poly (ADP-ribose) polymerase (E.C.2.4.2.30), thought to be involved in post-translational modification . O.I. C.G. H.G.
89.3 99.9 39.7 At5g67430 836879 GCN5-related N-acetyltransferase (GNAT) family protein F:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;PBA O.I. C.G. H.G.
70.0 99.9 55.7 At5g24280 832495 - F:unknown;P:unknown;C:unknown;PMOBF O.I. C.G. H.G.
68.3 99.9 93.4 At5g38910 833883 germin-like protein, putative F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFOB O.I. C.G. H.G.
63.8 99.8 30.3 At5g40840 834084 SYN2 Cohesion family protein SYN2 (SYN2). O.I. C.G. H.G.
56.9 99.8 125.5 At5g48020 834853 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPFM O.I. C.G. H.G.
54.8 99.8 39.3 At3g15240 820755 - - O.I. C.G. H.G.
49.6 99.8 151.1 At3g28510 822481 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;OMBFPAV O.I. C.G. H.G.
48.2 99.8 149.4 At1g18970 838478 GLP4 (GERMIN-LIKE PROTEIN 4) Encodes a germin-like protein with possible oxalate oxidase activity (based on GenBank record). O.I. C.G. H.G.
45.6 99.8 170.4 At3g09220 820078 LAC7 (laccase 7) putative laccase, a member of laccase family of genes (17 members in Arabidopsis). O.I. C.G. H.G.
45.3 99.8 26.7 At1g08260 837346 TIL1 (TILTED 1) Similar to POL2A, DNA polymerase epsilon catalytic subunit. Essential for Arabidopsis growth. Null homozygotes are embryo lethal, partial loss of function alleles show embryo patterning defects such as root pole displacement. Delayed progression through cell cycle results in embryos with smaller numbers of larger cells. O.I. C.G. H.G.
42.7 99.8 46.2 At2g31320 817690 PARP2 (POLY(ADP-RIBOSE) POLYMERASE 2) Abiotic Stress-inducible gene. O.I. C.G. H.G.
42.1 99.8 48.6 At4g37490 829904 CYCB1 Cyclin-dependent protein kinase CYCB1;1. Functions as an effector of growth control at G2/M. Regulated by TCP20. O.I. C.G. H.G.
41.1 99.8 39.1 At4g21070 827854 ATBRCA1 Encodes AtBRCA1, an ortholog of the human breast cancer susceptibility gene 1. Contains one N-terminal RING finger, two C-terminal BRCT and the p300/CBP interacting domain. Strongly induced by gamma rays, consistent with a putative role in DNA repair and in cell cycle control. O.I. C.G. H.G.
40.8 99.8 65.8 At1g19250 838508 FMO1 (FLAVIN-DEPENDENT MONOOXYGENASE 1) FMO1 is required for full expression of TIR-NB-LRR�conditioned resistance to avirulent pathogens and for basal resistance to invasive virulent pathogens. Functions in an EDS1-regulated but SA-independent mechanism that promotes resistance and cell death at pathogen infection sites. O.I. C.G. H.G.
40.0 99.8 23.9 At4g35740 829727 RecQl3 F:helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding;P:DNA recombination;C:cellular_component unknown;BOMFPAV O.I. C.G. H.G.
35.9 99.7 40.6 At3g45730 823715 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
35.9 99.7 26.5 At2g45460 819154 forkhead-associated domain-containing protein / FHA domain-containing protein F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:chloroplast;MOBFPAV O.I. C.G. H.G.
34.9 99.7 11.2 At2g23830 816915 vesicle-associated membrane protein, putative / VAMP, putative F:structural molecule activity;P:biological_process unknown;C:cellular_component unknown;MPFO O.I. C.G. H.G.
33.2 99.7 62.7 At1g51830 841610 ATP binding / kinase/ protein serine/threonine kinase F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:cellular_component unknown;PMOBFVA O.I. C.G. H.G.
32.2 99.7 48.0 At1g02220 839476 ANAC003 (Arabidopsis NAC domain containing protein 3) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PF O.I. C.G. H.G.
32.2 99.7 40.0 At3g53150 824481 UGT73D1 (UDP-glucosyl transferase 73D1) F:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity;P:metabolic process;C:endomembrane system;PMBVOF O.I. C.G. H.G.
30.8 99.7 26.3 At5g20850 832208 ATRAD51 Encodes a homolog of yeast RAD51. Its mRNA is most abundant in early flower buds and is expressed at high levels in exponentially growing cells in suspension cultures and is induced in response to gamma radiation. O.I. C.G. H.G.
30.2 99.7 363.8 At3g27060 822324 TSO2 (TSO meaning 'ugly' in Chinese) Encodes one of the 3 ribonucleotide reductase (RNR) small subunit genes. TSO2 transcription occurs predominantly at the S-phase of the cell cycle and its expression pattern is consistent with its role in dNDP biosynthesis during DNA replication in actively dividing cells. Critical for cell cycle progression, DNA damage repair and plant development. O.I. C.G. H.G.
29.9 99.7 40.3 At2g28570 817405 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
29.1 99.7 53.2 At2g23030 816833 SNRK2.9 (SNF1-RELATED PROTEIN KINASE 2.9) encodes a member of SNF1-related protein kinases (SnRK2) O.I. C.G. H.G.
28.5 99.7 43.2 At2g45920 819200 U-box domain-containing protein F:ubiquitin-protein ligase activity;P:protein ubiquitination;C:ubiquitin ligase complex;POMFBAV O.I. C.G. H.G.
27.9 99.7 27.1 At5g66130 836745 ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE) Encodes a homolog to yeast RAD17. Involved in the regulation of DNA damage repair and homologous recombination. Mutant has increased sensitivity to MMS and increased telomere lengths. O.I. C.G. H.G.
26.9 99.7 25.6 At1g31280 840016 AGO2 (argonaute 2) An Argonaute gene O.I. C.G. H.G.
26.6 99.7 45.4 At2g18360 816351 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:endomembrane system;BOMPFA O.I. C.G. H.G.
26.4 99.7 58.7 At3g44540 823579 FAR4 (FATTY ACID REDUCTASE 4) F:oxidoreductase activity, acting on the CH-CH group of donors, binding, catalytic activity;P:microsporogenesis, metabolic process;C:cellular_component unknown;MBPOF O.I. C.G. H.G.
26.3 99.7 39.2 At4g22960 828395 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPB O.I. C.G. H.G.
25.6 99.7 71.2 At5g11920 831065 AtcwINV6 (6-&1-fructan exohydrolase) Encodes a protein with fructan exohydrolase (FEH) activity acting on both inulin and levan-type fructans (1- and 6-FEH). The enzyme does not have invertase activity. O.I. C.G. H.G.
24.9 99.6 16.6 At4g19130 827651 DNA binding / nucleic acid binding / zinc ion binding F:DNA binding, zinc ion binding, nucleic acid binding;P:DNA replication;C:nucleus;MPOFA O.I. C.G. H.G.
24.9 99.6 16.3 At5g39970 833994 catalytic F:catalytic activity;P:biological_process unknown;C:anchored to membrane;OBPMAF O.I. C.G. H.G.
24.8 99.6 19.8 At3g55910 824757 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
24.8 99.6 19.5 At3g60470 825218 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
24.2 99.6 36.7 At2g47680 819381 zinc finger (CCCH type) helicase family protein F:helicase activity, zinc ion binding, nucleic acid binding, ATP binding;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;C:chloroplast;MBOFPV O.I. C.G. H.G.
23.9 99.6 38.5 At5g66700 836803 HB53 Encodes a homeodomain protein. Member of HD-ZIP 1 family, most closely related to HB5. AtHB53 is auxin-inducible and its induction is inhibited by cytokinin, especially in roots therefore may be involved in root development. O.I. C.G. H.G.
23.8 99.6 68.1 At2g15120 3768033 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
23.8 99.6 6.8 At3g21850 821739 ASK9 (ARABIDOPSIS SKP1-LIKE 9) one of Arabidopsis SKP1 homologues O.I. C.G. H.G.
23.7 99.6 183.9 At5g37740 833752 C2 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFO O.I. C.G. H.G.
23.7 99.6 44.7 At4g05200 825868 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
23.6 99.6 18.7 At4g15380 827204 CYP705A4 member of CYP705A O.I. C.G. H.G.
22.9 99.6 92.8 At4g10500 826642 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:secondary metabolic process;C:unknown;POBFM O.I. C.G. H.G.
22.6 99.6 27.3 At5g48175 834870 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
22.3 99.6 38.5 At2g46610 819273 arginine/serine-rich splicing factor, putative F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBVA O.I. C.G. H.G.
22.1 99.6 146.0 At5g59520 836071 ZIP2 encodes a metal ion transporter whose expression is regulated by copper. O.I. C.G. H.G.
22.1 99.6 93.0 At1g56320 842085 unknown protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P O.I. C.G. H.G.
21.2 99.6 112.1 At2g23540 816886 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM O.I. C.G. H.G.
21.2 99.6 7.0 At4g25330 828636 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
21.1 99.6 18.4 At1g10050 837540 glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein Encodes a putative glycosyl hydrolase family 10 protein (xylanase). O.I. C.G. H.G.
21.0 99.6 49.1 At4g08780 826448 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:vacuole;POFM O.I. C.G. H.G.
20.6 99.6 106.4 At1g09815 837513 POLD4 (POLYMERASE DELTA 4) F:DNA-directed DNA polymerase activity;P:DNA replication;C:nucleus;FMPO O.I. C.G. H.G.
20.6 99.6 19.5 At4g11880 826795 AGL14 (agamous-like 14) AGL12, AGL14, and AGL17 are all preferentially expressed in root tissues and therefore represent the only characterized MADS box genes expressed in roots. O.I. C.G. H.G.
20.0 99.6 37.5 At3g48920 824053 AtMYB45 (myb domain protein 45) Member of the R2R3 factor gene family. O.I. C.G. H.G.
19.9 99.6 359.5 At5g01870 831705 lipid transfer protein, putative Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15. O.I. C.G. H.G.
19.6 99.6 129.4 At1g18980 838479 germin-like protein, putative F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PBFO O.I. C.G. H.G.
19.5 99.6 356.1 At4g11650 826770 ATOSM34 (osmotin 34) osmotin-like protein O.I. C.G. H.G.
19.4 99.6 29.1 At5g54040 835487 DC1 domain-containing protein F:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMOF O.I. C.G. H.G.
19.3 99.6 86.8 At2g30500 817600 kinase interacting family protein F:unknown;P:unknown;C:unknown;MOBFPAV O.I. C.G. H.G.
19.1 99.6 30.6 At1g10990 837642 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
19.1 99.6 9.3 At1g71200 843460 DNA binding / transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;P O.I. C.G. H.G.
19.0 99.5 37.5 At2g35380 818105 peroxidase 20 (PER20) (P20) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB O.I. C.G. H.G.
18.9 99.5 17.8 At5g49780 835041 ATP binding / kinase/ protein serine/threonine kinase F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:unknown;MPOBFVA O.I. C.G. H.G.
18.8 99.5 47.6 At5g47050 834751 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOVFBA O.I. C.G. H.G.
18.6 99.5 27.7 At3g27070 822325 TOM20-1 (translocase outer membrane 20-1) Form of TOM20, which is a component of the TOM complex, involved in transport of nuclear-encoded mitochondrial proteins O.I. C.G. H.G.
18.2 99.5 100.0 At3g04070 819562 anac047 (Arabidopsis NAC domain containing protein 47) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P O.I. C.G. H.G.
18.0 99.5 142.2 At2g24180 816952 CYP71B6 (CYTOCHROME P450 71B6) cytochrome P450 monooxygenase O.I. C.G. H.G.
17.5 99.5 103.5 At4g36430 829795 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to other organism;C:cell wall;PFOBM O.I. C.G. H.G.
17.5 99.5 59.0 At5g37690 833748 GDSL-motif lipase/hydrolase family protein F:lipase activity, hydrolase activity, acting on ester bonds;P:lipid metabolic process;C:endomembrane system;PBFOM O.I. C.G. H.G.
17.1 99.5 23.3 At3g47040 823857 glycosyl hydrolase family 3 protein F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:cellular_component unknown;BOFPAM O.I. C.G. H.G.
17.0 99.5 40.7 At3g12230 820403 scpl14 (serine carboxypeptidase-like 14) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB O.I. C.G. H.G.
17.0 99.5 21.7 At5g49350 3771473 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBOPFVA O.I. C.G. H.G.
16.8 99.5 84.9 At1g49050 841328 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:unknown;PMFO O.I. C.G. H.G.
16.7 99.5 83.0 At4g01450 828176 nodulin MtN21 family protein F:unknown;P:unknown;C:endomembrane system, membrane;PBOM O.I. C.G. H.G.
16.6 99.5 69.5 At2g48140 819426 EDA4 (embryo sac development arrest 4) F:lipid binding;P:megagametogenesis, lipid transport;C:anchored to membrane;PBMOFV O.I. C.G. H.G.
16.6 99.5 14.1 At4g29170 829038 ATMND1 A homolog of yeast, mouse and human mnd1delta protein. Null mutants exhibit normal vegetative and flower development; however, during prophase I, chromosomes become fragmented resulting in random distribution of the fragments between polyads. Both male and female meiosis are defective and strong accumulation of AtRAD51 was observed in the inflorescence nuclei of mutant plants. Similarly to its yeast and animal homologues, AtMnd1 might play a role in DSB repair during meiosis. O.I. C.G. H.G.
16.5 99.5 61.3 At3g26470 822252 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
16.4 99.5 74.9 At5g39110 833904 germin-like protein, putative F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFO O.I. C.G. H.G.
16.4 99.5 69.5 At5g37990 833778 S-adenosylmethionine-dependent methyltransferase/ methyltransferase F:S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity;P:biological_process unknown;C:endomembrane system;POBMF O.I. C.G. H.G.
16.4 99.5 23.9 At4g14390 827084 ankyrin repeat family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFBVA O.I. C.G. H.G.
16.3 99.5 42.9 At1g07500 837264 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
16.2 99.5 117.9 At3g10500 820214 anac053 (Arabidopsis NAC domain containing protein 53) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PBOF O.I. C.G. H.G.
16.2 99.5 25.6 At2g47200 819333 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
16.2 99.5 10.1 At1g68940 843228 armadillo/beta-catenin repeat protein-related / U-box domain-containing protein F:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:ubiquitin ligase complex;POMBFV O.I. C.G. H.G.
16.1 99.5 72.5 At4g23700 828470 ATCHX17 (CATION/H+ EXCHANGER 17) member of Putative Na+/H+ antiporter family O.I. C.G. H.G.
16.0 99.5 27.7 At5g09290 830788 3'(2'),5'-bisphosphate nucleotidase, putative / inositol polyphosphate 1-phosphatase, putative F:3'(2'),5'-bisphosphate nucleotidase activity, inositol or phosphatidylinositol phosphatase activity;P:sulfur metabolic process;C:unknown;BOMFPA O.I. C.G. H.G.
15.8 99.5 58.7 At5g24380 832509 YSL2 (YELLOW STRIPE LIKE 2) closest Arabidopsis homolog of Zea maize metal-phytosiderophore/metal-nicotianamine transporter ZmYS1 O.I. C.G. H.G.
15.8 99.5 26.1 At2g30840 817635 2-oxoglutarate-dependent dioxygenase, putative encodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenase O.I. C.G. H.G.
15.6 99.5 17.5 At5g11460 831017 senescence-associated protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
15.4 99.5 11.0 At2g48090 819421 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
15.2 99.4 24.9 At3g04570 819613 DNA-binding protein-related F:unknown;P:biological_process unknown;C:unknown;BPMOFVA O.I. C.G. H.G.
15.2 99.4 18.9 At2g18600 816375 RUB1-conjugating enzyme, putative F:ubiquitin-protein ligase activity, small conjugating protein ligase activity, acid-amino acid ligase activity, ATP binding;P:regulation of protein metabolic process, protein modification process, post-translational protein modification;C:cellular_component unknown;MFOPV O.I. C.G. H.G.
15.0 99.4 51.8 At1g17360 838308 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVA O.I. C.G. H.G.
15.0 99.4 17.5 At5g40010 833998 AATP1 (AAA-ATPase 1) F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;OMBFPAV O.I. C.G. H.G.
14.9 99.4 18.3 At5g02220 831792 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
135.1	99.9	114.7	At5g48720	834930	XRI1 (X-RAY INDUCED TRANSCRIPT 1)	Encodes XRI1 (X-ray induced 1). Required for post-meiotic stages of pollen development and male and female meiosis. Maybe required for meiotic DNA repair. Inducible by X-ray. Homozygous xri1 mutants are sterile due to extensive chromosome fragmentation.	O.I.	C.G.	H.G.
113.4	99.9	33.0	At5g03780	831726	TRFL10 (TRF-LIKE 10)	Encodes a protein whose sequence is similar to human telomere proteins. This belongs to TRFL family 2, which do not show DNA binding in vitro.	O.I.	C.G.	H.G.
102.7	99.9	274.1	At3g07800	819971	thymidine kinase, putative	F:thymidine kinase activity, ATP binding;P:pyrimidine deoxyribonucleoside interconversion, anaerobic respiration;C:cellular_component unknown;BOVMPAF	O.I.	C.G.	H.G.
94.6	99.9	87.4	At4g02390	828049	APP (ARABIDOPSIS POLY(ADP-RIBOSE) POLYMERASE)	Encodes a DNA dependent nuclear poly (ADP-ribose) polymerase (E.C.2.4.2.30), thought to be involved in post-translational modification .	O.I.	C.G.	H.G.
89.3	99.9	39.7	At5g67430	836879	GCN5-related N-acetyltransferase (GNAT) family protein	F:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;PBA	O.I.	C.G.	H.G.
70.0	99.9	55.7	At5g24280	832495	-	F:unknown;P:unknown;C:unknown;PMOBF	O.I.	C.G.	H.G.
68.3	99.9	93.4	At5g38910	833883	germin-like protein, putative	F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFOB	O.I.	C.G.	H.G.
63.8	99.8	30.3	At5g40840	834084	SYN2	Cohesion family protein SYN2 (SYN2).	O.I.	C.G.	H.G.
56.9	99.8	125.5	At5g48020	834853	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPFM	O.I.	C.G.	H.G.
54.8	99.8	39.3	At3g15240	820755	-	-	O.I.	C.G.	H.G.
49.6	99.8	151.1	At3g28510	822481	AAA-type ATPase family protein	F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;OMBFPAV	O.I.	C.G.	H.G.
48.2	99.8	149.4	At1g18970	838478	GLP4 (GERMIN-LIKE PROTEIN 4)	Encodes a germin-like protein with possible oxalate oxidase activity (based on GenBank record).	O.I.	C.G.	H.G.
45.6	99.8	170.4	At3g09220	820078	LAC7 (laccase 7)	putative laccase, a member of laccase family of genes (17 members in Arabidopsis).	O.I.	C.G.	H.G.
45.3	99.8	26.7	At1g08260	837346	TIL1 (TILTED 1)	Similar to POL2A, DNA polymerase epsilon catalytic subunit. Essential for Arabidopsis growth. Null homozygotes are embryo lethal, partial loss of function alleles show embryo patterning defects such as root pole displacement. Delayed progression through cell cycle results in embryos with smaller numbers of larger cells.	O.I.	C.G.	H.G.
42.7	99.8	46.2	At2g31320	817690	PARP2 (POLY(ADP-RIBOSE) POLYMERASE 2)	Abiotic Stress-inducible gene.	O.I.	C.G.	H.G.
42.1	99.8	48.6	At4g37490	829904	CYCB1	Cyclin-dependent protein kinase CYCB1;1. Functions as an effector of growth control at G2/M. Regulated by TCP20.	O.I.	C.G.	H.G.
41.1	99.8	39.1	At4g21070	827854	ATBRCA1	Encodes AtBRCA1, an ortholog of the human breast cancer susceptibility gene 1. Contains one N-terminal RING finger, two C-terminal BRCT and the p300/CBP interacting domain. Strongly induced by gamma rays, consistent with a putative role in DNA repair and in cell cycle control.	O.I.	C.G.	H.G.
40.8	99.8	65.8	At1g19250	838508	FMO1 (FLAVIN-DEPENDENT MONOOXYGENASE 1)	FMO1 is required for full expression of TIR-NB-LRR�conditioned resistance to avirulent pathogens and for basal resistance to invasive virulent pathogens. Functions in an EDS1-regulated but SA-independent mechanism that promotes resistance and cell death at pathogen infection sites.	O.I.	C.G.	H.G.
40.0	99.8	23.9	At4g35740	829727	RecQl3	F:helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding;P:DNA recombination;C:cellular_component unknown;BOMFPAV	O.I.	C.G.	H.G.
35.9	99.7	40.6	At3g45730	823715	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
35.9	99.7	26.5	At2g45460	819154	forkhead-associated domain-containing protein / FHA domain-containing protein	F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:chloroplast;MOBFPAV	O.I.	C.G.	H.G.
34.9	99.7	11.2	At2g23830	816915	vesicle-associated membrane protein, putative / VAMP, putative	F:structural molecule activity;P:biological_process unknown;C:cellular_component unknown;MPFO	O.I.	C.G.	H.G.
33.2	99.7	62.7	At1g51830	841610	ATP binding / kinase/ protein serine/threonine kinase	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:cellular_component unknown;PMOBFVA	O.I.	C.G.	H.G.
32.2	99.7	48.0	At1g02220	839476	ANAC003 (Arabidopsis NAC domain containing protein 3)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
32.2	99.7	40.0	At3g53150	824481	UGT73D1 (UDP-glucosyl transferase 73D1)	F:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity;P:metabolic process;C:endomembrane system;PMBVOF	O.I.	C.G.	H.G.
30.8	99.7	26.3	At5g20850	832208	ATRAD51	Encodes a homolog of yeast RAD51. Its mRNA is most abundant in early flower buds and is expressed at high levels in exponentially growing cells in suspension cultures and is induced in response to gamma radiation.	O.I.	C.G.	H.G.
30.2	99.7	363.8	At3g27060	822324	TSO2 (TSO meaning 'ugly' in Chinese)	Encodes one of the 3 ribonucleotide reductase (RNR) small subunit genes. TSO2 transcription occurs predominantly at the S-phase of the cell cycle and its expression pattern is consistent with its role in dNDP biosynthesis during DNA replication in actively dividing cells. Critical for cell cycle progression, DNA damage repair and plant development.	O.I.	C.G.	H.G.
29.9	99.7	40.3	At2g28570	817405	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
29.1	99.7	53.2	At2g23030	816833	SNRK2.9 (SNF1-RELATED PROTEIN KINASE 2.9)	encodes a member of SNF1-related protein kinases (SnRK2)	O.I.	C.G.	H.G.
28.5	99.7	43.2	At2g45920	819200	U-box domain-containing protein	F:ubiquitin-protein ligase activity;P:protein ubiquitination;C:ubiquitin ligase complex;POMFBAV	O.I.	C.G.	H.G.
27.9	99.7	27.1	At5g66130	836745	ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE)	Encodes a homolog to yeast RAD17. Involved in the regulation of DNA damage repair and homologous recombination. Mutant has increased sensitivity to MMS and increased telomere lengths.	O.I.	C.G.	H.G.
26.9	99.7	25.6	At1g31280	840016	AGO2 (argonaute 2)	An Argonaute gene	O.I.	C.G.	H.G.
26.6	99.7	45.4	At2g18360	816351	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:unknown;C:endomembrane system;BOMPFA	O.I.	C.G.	H.G.
26.4	99.7	58.7	At3g44540	823579	FAR4 (FATTY ACID REDUCTASE 4)	F:oxidoreductase activity, acting on the CH-CH group of donors, binding, catalytic activity;P:microsporogenesis, metabolic process;C:cellular_component unknown;MBPOF	O.I.	C.G.	H.G.
26.3	99.7	39.2	At4g22960	828395	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPB	O.I.	C.G.	H.G.
25.6	99.7	71.2	At5g11920	831065	AtcwINV6 (6-&1-fructan exohydrolase)	Encodes a protein with fructan exohydrolase (FEH) activity acting on both inulin and levan-type fructans (1- and 6-FEH). The enzyme does not have invertase activity.	O.I.	C.G.	H.G.
24.9	99.6	16.6	At4g19130	827651	DNA binding / nucleic acid binding / zinc ion binding	F:DNA binding, zinc ion binding, nucleic acid binding;P:DNA replication;C:nucleus;MPOFA	O.I.	C.G.	H.G.
24.9	99.6	16.3	At5g39970	833994	catalytic	F:catalytic activity;P:biological_process unknown;C:anchored to membrane;OBPMAF	O.I.	C.G.	H.G.
24.8	99.6	19.8	At3g55910	824757	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
24.8	99.6	19.5	At3g60470	825218	unknown protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
24.2	99.6	36.7	At2g47680	819381	zinc finger (CCCH type) helicase family protein	F:helicase activity, zinc ion binding, nucleic acid binding, ATP binding;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;C:chloroplast;MBOFPV	O.I.	C.G.	H.G.
23.9	99.6	38.5	At5g66700	836803	HB53	Encodes a homeodomain protein. Member of HD-ZIP 1 family, most closely related to HB5. AtHB53 is auxin-inducible and its induction is inhibited by cytokinin, especially in roots therefore may be involved in root development.	O.I.	C.G.	H.G.
23.8	99.6	68.1	At2g15120	3768033	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
23.8	99.6	6.8	At3g21850	821739	ASK9 (ARABIDOPSIS SKP1-LIKE 9)	one of Arabidopsis SKP1 homologues	O.I.	C.G.	H.G.
23.7	99.6	183.9	At5g37740	833752	C2 domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFO	O.I.	C.G.	H.G.
23.7	99.6	44.7	At4g05200	825868	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
23.6	99.6	18.7	At4g15380	827204	CYP705A4	member of CYP705A	O.I.	C.G.	H.G.
22.9	99.6	92.8	At4g10500	826642	oxidoreductase, 2OG-Fe(II) oxygenase family protein	F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:secondary metabolic process;C:unknown;POBFM	O.I.	C.G.	H.G.
22.6	99.6	27.3	At5g48175	834870	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
22.3	99.6	38.5	At2g46610	819273	arginine/serine-rich splicing factor, putative	F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBVA	O.I.	C.G.	H.G.
22.1	99.6	146.0	At5g59520	836071	ZIP2	encodes a metal ion transporter whose expression is regulated by copper.	O.I.	C.G.	H.G.
22.1	99.6	93.0	At1g56320	842085	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
21.2	99.6	112.1	At2g23540	816886	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM	O.I.	C.G.	H.G.
21.2	99.6	7.0	At4g25330	828636	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
21.1	99.6	18.4	At1g10050	837540	glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein	Encodes a putative glycosyl hydrolase family 10 protein (xylanase).	O.I.	C.G.	H.G.
21.0	99.6	49.1	At4g08780	826448	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:vacuole;POFM	O.I.	C.G.	H.G.
20.6	99.6	106.4	At1g09815	837513	POLD4 (POLYMERASE DELTA 4)	F:DNA-directed DNA polymerase activity;P:DNA replication;C:nucleus;FMPO	O.I.	C.G.	H.G.
20.6	99.6	19.5	At4g11880	826795	AGL14 (agamous-like 14)	AGL12, AGL14, and AGL17 are all preferentially expressed in root tissues and therefore represent the only characterized MADS box genes expressed in roots.	O.I.	C.G.	H.G.
20.0	99.6	37.5	At3g48920	824053	AtMYB45 (myb domain protein 45)	Member of the R2R3 factor gene family.	O.I.	C.G.	H.G.
19.9	99.6	359.5	At5g01870	831705	lipid transfer protein, putative	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.	O.I.	C.G.	H.G.
19.6	99.6	129.4	At1g18980	838479	germin-like protein, putative	F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PBFO	O.I.	C.G.	H.G.
19.5	99.6	356.1	At4g11650	826770	ATOSM34 (osmotin 34)	osmotin-like protein	O.I.	C.G.	H.G.
19.4	99.6	29.1	At5g54040	835487	DC1 domain-containing protein	F:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMOF	O.I.	C.G.	H.G.
19.3	99.6	86.8	At2g30500	817600	kinase interacting family protein	F:unknown;P:unknown;C:unknown;MOBFPAV	O.I.	C.G.	H.G.
19.1	99.6	30.6	At1g10990	837642	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
19.1	99.6	9.3	At1g71200	843460	DNA binding / transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;P	O.I.	C.G.	H.G.
19.0	99.5	37.5	At2g35380	818105	peroxidase 20 (PER20) (P20)	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB	O.I.	C.G.	H.G.
18.9	99.5	17.8	At5g49780	835041	ATP binding / kinase/ protein serine/threonine kinase	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:unknown;MPOBFVA	O.I.	C.G.	H.G.
18.8	99.5	47.6	At5g47050	834751	protein binding / zinc ion binding	F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOVFBA	O.I.	C.G.	H.G.
18.6	99.5	27.7	At3g27070	822325	TOM20-1 (translocase outer membrane 20-1)	Form of TOM20, which is a component of the TOM complex, involved in transport of nuclear-encoded mitochondrial proteins	O.I.	C.G.	H.G.
18.2	99.5	100.0	At3g04070	819562	anac047 (Arabidopsis NAC domain containing protein 47)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P	O.I.	C.G.	H.G.
18.0	99.5	142.2	At2g24180	816952	CYP71B6 (CYTOCHROME P450 71B6)	cytochrome P450 monooxygenase	O.I.	C.G.	H.G.
17.5	99.5	103.5	At4g36430	829795	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to other organism;C:cell wall;PFOBM	O.I.	C.G.	H.G.
17.5	99.5	59.0	At5g37690	833748	GDSL-motif lipase/hydrolase family protein	F:lipase activity, hydrolase activity, acting on ester bonds;P:lipid metabolic process;C:endomembrane system;PBFOM	O.I.	C.G.	H.G.
17.1	99.5	23.3	At3g47040	823857	glycosyl hydrolase family 3 protein	F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:cellular_component unknown;BOFPAM	O.I.	C.G.	H.G.
17.0	99.5	40.7	At3g12230	820403	scpl14 (serine carboxypeptidase-like 14)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB	O.I.	C.G.	H.G.
17.0	99.5	21.7	At5g49350	3771473	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBOPFVA	O.I.	C.G.	H.G.
16.8	99.5	84.9	At1g49050	841328	aspartyl protease family protein	F:aspartic-type endopeptidase activity;P:proteolysis;C:unknown;PMFO	O.I.	C.G.	H.G.
16.7	99.5	83.0	At4g01450	828176	nodulin MtN21 family protein	F:unknown;P:unknown;C:endomembrane system, membrane;PBOM	O.I.	C.G.	H.G.
16.6	99.5	69.5	At2g48140	819426	EDA4 (embryo sac development arrest 4)	F:lipid binding;P:megagametogenesis, lipid transport;C:anchored to membrane;PBMOFV	O.I.	C.G.	H.G.
16.6	99.5	14.1	At4g29170	829038	ATMND1	A homolog of yeast, mouse and human mnd1delta protein. Null mutants exhibit normal vegetative and flower development; however, during prophase I, chromosomes become fragmented resulting in random distribution of the fragments between polyads. Both male and female meiosis are defective and strong accumulation of AtRAD51 was observed in the inflorescence nuclei of mutant plants. Similarly to its yeast and animal homologues, AtMnd1 might play a role in DSB repair during meiosis.	O.I.	C.G.	H.G.
16.5	99.5	61.3	At3g26470	822252	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
16.4	99.5	74.9	At5g39110	833904	germin-like protein, putative	F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFO	O.I.	C.G.	H.G.
16.4	99.5	69.5	At5g37990	833778	S-adenosylmethionine-dependent methyltransferase/ methyltransferase	F:S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity;P:biological_process unknown;C:endomembrane system;POBMF	O.I.	C.G.	H.G.
16.4	99.5	23.9	At4g14390	827084	ankyrin repeat family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFBVA	O.I.	C.G.	H.G.
16.3	99.5	42.9	At1g07500	837264	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
16.2	99.5	117.9	At3g10500	820214	anac053 (Arabidopsis NAC domain containing protein 53)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PBOF	O.I.	C.G.	H.G.
16.2	99.5	25.6	At2g47200	819333	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
16.2	99.5	10.1	At1g68940	843228	armadillo/beta-catenin repeat protein-related / U-box domain-containing protein	F:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:ubiquitin ligase complex;POMBFV	O.I.	C.G.	H.G.
16.1	99.5	72.5	At4g23700	828470	ATCHX17 (CATION/H+ EXCHANGER 17)	member of Putative Na+/H+ antiporter family	O.I.	C.G.	H.G.
16.0	99.5	27.7	At5g09290	830788	3'(2'),5'-bisphosphate nucleotidase, putative / inositol polyphosphate 1-phosphatase, putative	F:3'(2'),5'-bisphosphate nucleotidase activity, inositol or phosphatidylinositol phosphatase activity;P:sulfur metabolic process;C:unknown;BOMFPA	O.I.	C.G.	H.G.
15.8	99.5	58.7	At5g24380	832509	YSL2 (YELLOW STRIPE LIKE 2)	closest Arabidopsis homolog of Zea maize metal-phytosiderophore/metal-nicotianamine transporter ZmYS1	O.I.	C.G.	H.G.
15.8	99.5	26.1	At2g30840	817635	2-oxoglutarate-dependent dioxygenase, putative	encodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenase	O.I.	C.G.	H.G.
15.6	99.5	17.5	At5g11460	831017	senescence-associated protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
15.4	99.5	11.0	At2g48090	819421	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
15.2	99.4	24.9	At3g04570	819613	DNA-binding protein-related	F:unknown;P:biological_process unknown;C:unknown;BPMOFVA	O.I.	C.G.	H.G.
15.2	99.4	18.9	At2g18600	816375	RUB1-conjugating enzyme, putative	F:ubiquitin-protein ligase activity, small conjugating protein ligase activity, acid-amino acid ligase activity, ATP binding;P:regulation of protein metabolic process, protein modification process, post-translational protein modification;C:cellular_component unknown;MFOPV	O.I.	C.G.	H.G.
15.0	99.4	51.8	At1g17360	838308	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVA	O.I.	C.G.	H.G.
15.0	99.4	17.5	At5g40010	833998	AATP1 (AAA-ATPase 1)	F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;OMBFPAV	O.I.	C.G.	H.G.
14.9	99.4	18.3	At5g02220	831792	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.

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GSM ID	GSM131374
Assay name	AtGen_6-5422_Genotoxicstress-Roots-6.0h_Rep2
GSE experiment	GSE5625: AtGenExpress: Stress Treatments (Genotoxic stress)

Microarray experiments to specifically-expressed genes

GSM ID GSM131374 Assay name AtGen_6-5422_Genotoxicstress-Roots-6.0h_Rep2 GSE experiment GSE5625: AtGenExpress: Stress Treatments (Genotoxic stress)

GSM ID GSM131374

Assay name AtGen_6-5422_Genotoxicstress-Roots-6.0h_Rep2

GSE experiment GSE5625: AtGenExpress: Stress Treatments (Genotoxic stress)