CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM131373

Assay name AtGen_6-5421_Genotoxicstress-Roots-6.0h_Rep1

GSE experiment GSE5625: AtGenExpress: Stress Treatments (Genotoxic stress)

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
209.8 100.0 57.4 At1g08260 837346 TIL1 (TILTED 1) Similar to POL2A, DNA polymerase epsilon catalytic subunit. Essential for Arabidopsis growth. Null homozygotes are embryo lethal, partial loss of function alleles show embryo patterning defects such as root pole displacement. Delayed progression through cell cycle results in embryos with smaller numbers of larger cells. O.I. C.G. H.G.
107.4 99.9 102.3 At5g48720 834930 XRI1 (X-RAY INDUCED TRANSCRIPT 1) Encodes XRI1 (X-ray induced 1). Required for post-meiotic stages of pollen development and male and female meiosis. Maybe required for meiotic DNA repair. Inducible by X-ray. Homozygous xri1 mutants are sterile due to extensive chromosome fragmentation. O.I. C.G. H.G.
94.0 99.9 30.1 At5g03780 831726 TRFL10 (TRF-LIKE 10) Encodes a protein whose sequence is similar to human telomere proteins. This belongs to TRFL family 2, which do not show DNA binding in vitro. O.I. C.G. H.G.
85.2 99.9 249.7 At3g07800 819971 thymidine kinase, putative F:thymidine kinase activity, ATP binding;P:pyrimidine deoxyribonucleoside interconversion, anaerobic respiration;C:cellular_component unknown;BOVMPAF O.I. C.G. H.G.
78.2 99.9 79.5 At4g02390 828049 APP (ARABIDOPSIS POLY(ADP-RIBOSE) POLYMERASE) Encodes a DNA dependent nuclear poly (ADP-ribose) polymerase (E.C.2.4.2.30), thought to be involved in post-translational modification . O.I. C.G. H.G.
63.8 99.8 132.9 At5g48020 834853 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPFM O.I. C.G. H.G.
60.9 99.8 52.0 At5g24280 832495 - F:unknown;P:unknown;C:unknown;PMOBF O.I. C.G. H.G.
54.6 99.8 31.0 At5g67430 836879 GCN5-related N-acetyltransferase (GNAT) family protein F:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;PBA O.I. C.G. H.G.
52.9 99.8 27.6 At5g40840 834084 SYN2 Cohesion family protein SYN2 (SYN2). O.I. C.G. H.G.
52.6 99.8 74.7 At1g19250 838508 FMO1 (FLAVIN-DEPENDENT MONOOXYGENASE 1) FMO1 is required for full expression of TIR-NB-LRR�conditioned resistance to avirulent pathogens and for basal resistance to invasive virulent pathogens. Functions in an EDS1-regulated but SA-independent mechanism that promotes resistance and cell death at pathogen infection sites. O.I. C.G. H.G.
51.8 99.8 24.0 At4g19130 827651 DNA binding / nucleic acid binding / zinc ion binding F:DNA binding, zinc ion binding, nucleic acid binding;P:DNA replication;C:nucleus;MPOFA O.I. C.G. H.G.
48.2 99.8 149.3 At1g18970 838478 GLP4 (GERMIN-LIKE PROTEIN 4) Encodes a germin-like protein with possible oxalate oxidase activity (based on GenBank record). O.I. C.G. H.G.
47.8 99.8 227.0 At3g43190 823393 SUS4 Encodes a protein with sucrose synthase activity (SUS4). O.I. C.G. H.G.
43.1 99.8 31.1 At5g20850 832208 ATRAD51 Encodes a homolog of yeast RAD51. Its mRNA is most abundant in early flower buds and is expressed at high levels in exponentially growing cells in suspension cultures and is induced in response to gamma radiation. O.I. C.G. H.G.
40.7 99.8 33.9 At3g15240 820755 - - O.I. C.G. H.G.
40.5 99.8 160.6 At3g09220 820078 LAC7 (laccase 7) putative laccase, a member of laccase family of genes (17 members in Arabidopsis). O.I. C.G. H.G.
34.9 99.7 22.4 At4g35740 829727 RecQl3 F:helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding;P:DNA recombination;C:cellular_component unknown;BOMFPAV O.I. C.G. H.G.
34.7 99.7 17.6 At4g04990 825841 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPOFBV O.I. C.G. H.G.
34.6 99.7 35.9 At4g21070 827854 ATBRCA1 Encodes AtBRCA1, an ortholog of the human breast cancer susceptibility gene 1. Contains one N-terminal RING finger, two C-terminal BRCT and the p300/CBP interacting domain. Strongly induced by gamma rays, consistent with a putative role in DNA repair and in cell cycle control. O.I. C.G. H.G.
34.2 99.7 39.7 At3g45730 823715 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
34.0 99.7 63.6 At2g29870 817537 major intrinsic family protein / MIP family protein F:water channel activity;P:transport;C:membrane;BPMOFA O.I. C.G. H.G.
32.3 99.7 25.1 At2g45460 819154 forkhead-associated domain-containing protein / FHA domain-containing protein F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:chloroplast;MOBFPAV O.I. C.G. H.G.
31.8 99.7 42.3 At4g37490 829904 CYCB1 Cyclin-dependent protein kinase CYCB1;1. Functions as an effector of growth control at G2/M. Regulated by TCP20. O.I. C.G. H.G.
31.2 99.7 63.1 At5g38910 833883 germin-like protein, putative F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFOB O.I. C.G. H.G.
29.6 99.7 59.2 At1g51830 841610 ATP binding / kinase/ protein serine/threonine kinase F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:cellular_component unknown;PMOBFVA O.I. C.G. H.G.
29.0 99.7 259.3 At4g33070 829444 pyruvate decarboxylase, putative F:in 6 functions;P:unknown;C:membrane;BOFPAMV O.I. C.G. H.G.
29.0 99.7 92.5 At5g37990 833778 S-adenosylmethionine-dependent methyltransferase/ methyltransferase F:S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity;P:biological_process unknown;C:endomembrane system;POBMF O.I. C.G. H.G.
27.9 99.7 27.2 At5g66130 836745 ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE) Encodes a homolog to yeast RAD17. Involved in the regulation of DNA damage repair and homologous recombination. Mutant has increased sensitivity to MMS and increased telomere lengths. O.I. C.G. H.G.
27.8 99.7 64.3 At5g10040 830868 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
27.6 99.7 11.5 At1g53990 841837 GLIP3 Contains lipase signature motif and GDSL domain. O.I. C.G. H.G.
26.6 99.7 9.8 At2g23830 816915 vesicle-associated membrane protein, putative / VAMP, putative F:structural molecule activity;P:biological_process unknown;C:cellular_component unknown;MPFO O.I. C.G. H.G.
26.5 99.7 22.1 At4g11880 826795 AGL14 (agamous-like 14) AGL12, AGL14, and AGL17 are all preferentially expressed in root tissues and therefore represent the only characterized MADS box genes expressed in roots. O.I. C.G. H.G.
25.8 99.7 36.0 At2g31320 817690 PARP2 (POLY(ADP-RIBOSE) POLYMERASE 2) Abiotic Stress-inducible gene. O.I. C.G. H.G.
25.2 99.6 19.3 At4g15380 827204 CYP705A4 member of CYP705A O.I. C.G. H.G.
24.8 99.6 20.0 At1g10050 837540 glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein Encodes a putative glycosyl hydrolase family 10 protein (xylanase). O.I. C.G. H.G.
24.6 99.6 35.0 At3g53150 824481 UGT73D1 (UDP-glucosyl transferase 73D1) F:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity;P:metabolic process;C:endomembrane system;PMBVOF O.I. C.G. H.G.
23.9 99.6 41.3 At1g02220 839476 ANAC003 (Arabidopsis NAC domain containing protein 3) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PF O.I. C.G. H.G.
23.5 99.6 320.9 At3g27060 822324 TSO2 (TSO meaning 'ugly' in Chinese) Encodes one of the 3 ribonucleotide reductase (RNR) small subunit genes. TSO2 transcription occurs predominantly at the S-phase of the cell cycle and its expression pattern is consistent with its role in dNDP biosynthesis during DNA replication in actively dividing cells. Critical for cell cycle progression, DNA damage repair and plant development. O.I. C.G. H.G.
23.3 99.6 50.0 At4g24110 828511 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
23.0 99.6 39.1 At2g46610 819273 arginine/serine-rich splicing factor, putative F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBVA O.I. C.G. H.G.
22.5 99.6 35.0 At2g28570 817405 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
22.3 99.6 10.0 At1g13330 837893 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBFAPV O.I. C.G. H.G.
22.2 99.6 19.3 At5g49780 835041 ATP binding / kinase/ protein serine/threonine kinase F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:unknown;MPOBFVA O.I. C.G. H.G.
22.1 99.6 100.9 At3g28510 822481 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;OMBFPAV O.I. C.G. H.G.
21.8 99.6 10.7 At5g53990 835482 glycosyltransferase family protein F:transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBOFV O.I. C.G. H.G.
21.7 99.6 39.9 At1g01190 839233 CYP78A8 member of CYP78A O.I. C.G. H.G.
21.2 99.6 6.6 At5g49110 834970 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;BMOFPV O.I. C.G. H.G.
21.0 99.6 122.1 At1g43800 840977 acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative F:acyl-[acyl-carrier-protein] desaturase activity, oxidoreductase activity, transition metal ion binding;P:fatty acid metabolic process, fatty acid biosynthetic process;C:membrane;PBOM O.I. C.G. H.G.
20.9 99.6 63.8 At2g15120 3768033 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
20.6 99.6 51.9 At3g44540 823579 FAR4 (FATTY ACID REDUCTASE 4) F:oxidoreductase activity, acting on the CH-CH group of donors, binding, catalytic activity;P:microsporogenesis, metabolic process;C:cellular_component unknown;MBPOF O.I. C.G. H.G.
20.5 99.6 28.9 At3g04570 819613 DNA-binding protein-related F:unknown;P:biological_process unknown;C:unknown;BPMOFVA O.I. C.G. H.G.
20.4 99.6 44.6 At2g23030 816833 SNRK2.9 (SNF1-RELATED PROTEIN KINASE 2.9) encodes a member of SNF1-related protein kinases (SnRK2) O.I. C.G. H.G.
20.2 99.6 63.2 At5g11920 831065 AtcwINV6 (6-&1-fructan exohydrolase) Encodes a protein with fructan exohydrolase (FEH) activity acting on both inulin and levan-type fructans (1- and 6-FEH). The enzyme does not have invertase activity. O.I. C.G. H.G.
20.1 99.6 34.3 At4g22960 828395 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPB O.I. C.G. H.G.
19.8 99.6 88.2 At1g56320 842085 unknown protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P O.I. C.G. H.G.
19.6 99.6 24.0 At5g49770 835040 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
19.5 99.6 38.0 At2g35380 818105 peroxidase 20 (PER20) (P20) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB O.I. C.G. H.G.
19.4 99.6 114.1 At5g66985 836833 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
19.1 99.6 136.0 At5g59520 836071 ZIP2 encodes a metal ion transporter whose expression is regulated by copper. O.I. C.G. H.G.
18.9 99.5 27.7 At2g47200 819333 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
18.4 99.5 23.7 At5g59530 836072 2-oxoglutarate-dependent dioxygenase, putative F:transferase activity, transferring glycosyl groups;P:unknown;C:unknown;POBFM O.I. C.G. H.G.
18.3 99.5 22.5 At3g22800 821851 leucine-rich repeat family protein / extensin family protein F:structural constituent of cell wall, protein binding;P:unknown;C:endomembrane system;MPBOFVA O.I. C.G. H.G.
18.1 99.5 160.4 At5g37740 833752 C2 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFO O.I. C.G. H.G.
17.8 99.5 77.3 At2g19590 816478 ACO1 (ACC OXIDASE 1) encodes a protein whose sequence is similar to 1-aminocyclopropane-1-carboxylate oxidase O.I. C.G. H.G.
17.6 99.5 20.8 At1g36640 840572 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
17.4 99.5 18.6 At5g11460 831017 senescence-associated protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
17.3 99.5 5.8 At3g21850 821739 ASK9 (ARABIDOPSIS SKP1-LIKE 9) one of Arabidopsis SKP1 homologues O.I. C.G. H.G.
17.2 99.5 36.5 At2g18360 816351 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:endomembrane system;BOMPFA O.I. C.G. H.G.
17.1 99.5 29.1 At1g10990 837642 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
17.0 99.5 75.4 At4g20390 827787 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
16.7 99.5 65.5 At2g17850 816295 - F:molecular_function unknown;P:aging;C:endomembrane system;BOPAMF O.I. C.G. H.G.
16.5 99.5 15.1 At1g78990 844239 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFB O.I. C.G. H.G.
16.4 99.5 49.4 At5g63560 836475 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PF O.I. C.G. H.G.
16.4 99.5 42.4 At2g18140 816327 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:cell wall;PFOBM O.I. C.G. H.G.
16.4 99.5 17.7 At5g42630 834270 ATS (ABERRANT TESTA SHAPE) Encodes a member of the KANADI family of putative transcription factors. Involved in integument formation during ovule development and expressed at the boundary between the inner and outer integuments. It is essential for directing laminar growth of the inner integument.Along with KAN1 and KAN2, KAN4 is involved in proper localization of PIN1 in early embryogenesis. O.I. C.G. H.G.
16.3 99.5 13.2 At5g39970 833994 catalytic F:catalytic activity;P:biological_process unknown;C:anchored to membrane;OBPMAF O.I. C.G. H.G.
16.3 99.5 11.1 At3g47675 2745949 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
16.2 99.5 219.6 At5g20830 832206 SUS1 (SUCROSE SYNTHASE 1) Encodes a protein with sucrose synthase activity (SUS1). O.I. C.G. H.G.
16.2 99.5 60.8 At3g26470 822252 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
16.2 99.5 53.7 At5g44550 834482 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
16.2 99.5 12.2 At4g19980 827742 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
16.2 99.5 8.8 At3g12220 820402 scpl16 (serine carboxypeptidase-like 16) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO O.I. C.G. H.G.
16.0 99.5 31.0 At2g29330 817482 TRI (tropinone reductase) F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAV O.I. C.G. H.G.
15.9 99.5 27.6 At5g09290 830788 3'(2'),5'-bisphosphate nucleotidase, putative / inositol polyphosphate 1-phosphatase, putative F:3'(2'),5'-bisphosphate nucleotidase activity, inositol or phosphatidylinositol phosphatase activity;P:sulfur metabolic process;C:unknown;BOMFPA O.I. C.G. H.G.
15.8 99.5 36.5 At4g05200 825868 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
15.7 99.5 235.1 At3g01420 821135 DOX1 Encodes an alpha-dioxygenase involved in protection against oxidative stress and cell death. Induced in response to Salicylic acid and oxidative stress. Independent of NPR1 in induction by salicylic acid. O.I. C.G. H.G.
15.7 99.5 57.4 At4g17670 827487 senescence-associated protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
15.6 99.5 69.0 At3g29970 822700 germination protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
15.4 99.5 41.7 At1g07500 837264 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
15.4 99.5 22.6 At5g48175 834870 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
15.3 99.4 149.1 At2g38860 818470 YLS5 Encodes protease I (pfpI)-like protein YLS5. O.I. C.G. H.G.
15.3 99.4 64.7 At2g46750 819288 FAD-binding domain-containing protein F:oxidoreductase activity, D-arabinono-1,4-lactone oxidase activity, FAD binding, catalytic activity;P:unknown;C:membrane;BOPFMA O.I. C.G. H.G.
15.3 99.4 18.8 At4g37730 829929 AtbZIP7 (Arabidopsis thaliana basic leucine-zipper 7) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMOFB O.I. C.G. H.G.
15.2 99.4 20.0 At5g06740 830563 lectin protein kinase family protein F:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
15.1 99.4 12.5 At3g42860 823332 zinc knuckle (CCHC-type) family protein F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;VMPFO O.I. C.G. H.G.
15.0 99.4 113.6 At3g10500 820214 anac053 (Arabidopsis NAC domain containing protein 53) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PBOF O.I. C.G. H.G.
15.0 99.4 109.5 At2g18370 816352 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15. O.I. C.G. H.G.
14.9 99.4 64.9 At2g23150 816847 NRAMP3 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 3) Encodes a member of the Nramp2 metal transporter family; like its homolog Atnramp4, localized in vacuolar membrane. Seedlings of double mutant, atnramp3-1 atnramp4-1, were arrested at early germination. O.I. C.G. H.G.
14.8 99.4 65.7 At2g48140 819426 EDA4 (embryo sac development arrest 4) F:lipid binding;P:megagametogenesis, lipid transport;C:anchored to membrane;PBMOFV O.I. C.G. H.G.
14.7 99.4 69.6 At1g59500 842240 GH3.4 encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro. O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
209.8	100.0	57.4	At1g08260	837346	TIL1 (TILTED 1)	Similar to POL2A, DNA polymerase epsilon catalytic subunit. Essential for Arabidopsis growth. Null homozygotes are embryo lethal, partial loss of function alleles show embryo patterning defects such as root pole displacement. Delayed progression through cell cycle results in embryos with smaller numbers of larger cells.	O.I.	C.G.	H.G.
107.4	99.9	102.3	At5g48720	834930	XRI1 (X-RAY INDUCED TRANSCRIPT 1)	Encodes XRI1 (X-ray induced 1). Required for post-meiotic stages of pollen development and male and female meiosis. Maybe required for meiotic DNA repair. Inducible by X-ray. Homozygous xri1 mutants are sterile due to extensive chromosome fragmentation.	O.I.	C.G.	H.G.
94.0	99.9	30.1	At5g03780	831726	TRFL10 (TRF-LIKE 10)	Encodes a protein whose sequence is similar to human telomere proteins. This belongs to TRFL family 2, which do not show DNA binding in vitro.	O.I.	C.G.	H.G.
85.2	99.9	249.7	At3g07800	819971	thymidine kinase, putative	F:thymidine kinase activity, ATP binding;P:pyrimidine deoxyribonucleoside interconversion, anaerobic respiration;C:cellular_component unknown;BOVMPAF	O.I.	C.G.	H.G.
78.2	99.9	79.5	At4g02390	828049	APP (ARABIDOPSIS POLY(ADP-RIBOSE) POLYMERASE)	Encodes a DNA dependent nuclear poly (ADP-ribose) polymerase (E.C.2.4.2.30), thought to be involved in post-translational modification .	O.I.	C.G.	H.G.
63.8	99.8	132.9	At5g48020	834853	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPFM	O.I.	C.G.	H.G.
60.9	99.8	52.0	At5g24280	832495	-	F:unknown;P:unknown;C:unknown;PMOBF	O.I.	C.G.	H.G.
54.6	99.8	31.0	At5g67430	836879	GCN5-related N-acetyltransferase (GNAT) family protein	F:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;PBA	O.I.	C.G.	H.G.
52.9	99.8	27.6	At5g40840	834084	SYN2	Cohesion family protein SYN2 (SYN2).	O.I.	C.G.	H.G.
52.6	99.8	74.7	At1g19250	838508	FMO1 (FLAVIN-DEPENDENT MONOOXYGENASE 1)	FMO1 is required for full expression of TIR-NB-LRR�conditioned resistance to avirulent pathogens and for basal resistance to invasive virulent pathogens. Functions in an EDS1-regulated but SA-independent mechanism that promotes resistance and cell death at pathogen infection sites.	O.I.	C.G.	H.G.
51.8	99.8	24.0	At4g19130	827651	DNA binding / nucleic acid binding / zinc ion binding	F:DNA binding, zinc ion binding, nucleic acid binding;P:DNA replication;C:nucleus;MPOFA	O.I.	C.G.	H.G.
48.2	99.8	149.3	At1g18970	838478	GLP4 (GERMIN-LIKE PROTEIN 4)	Encodes a germin-like protein with possible oxalate oxidase activity (based on GenBank record).	O.I.	C.G.	H.G.
47.8	99.8	227.0	At3g43190	823393	SUS4	Encodes a protein with sucrose synthase activity (SUS4).	O.I.	C.G.	H.G.
43.1	99.8	31.1	At5g20850	832208	ATRAD51	Encodes a homolog of yeast RAD51. Its mRNA is most abundant in early flower buds and is expressed at high levels in exponentially growing cells in suspension cultures and is induced in response to gamma radiation.	O.I.	C.G.	H.G.
40.7	99.8	33.9	At3g15240	820755	-	-	O.I.	C.G.	H.G.
40.5	99.8	160.6	At3g09220	820078	LAC7 (laccase 7)	putative laccase, a member of laccase family of genes (17 members in Arabidopsis).	O.I.	C.G.	H.G.
34.9	99.7	22.4	At4g35740	829727	RecQl3	F:helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding;P:DNA recombination;C:cellular_component unknown;BOMFPAV	O.I.	C.G.	H.G.
34.7	99.7	17.6	At4g04990	825841	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPOFBV	O.I.	C.G.	H.G.
34.6	99.7	35.9	At4g21070	827854	ATBRCA1	Encodes AtBRCA1, an ortholog of the human breast cancer susceptibility gene 1. Contains one N-terminal RING finger, two C-terminal BRCT and the p300/CBP interacting domain. Strongly induced by gamma rays, consistent with a putative role in DNA repair and in cell cycle control.	O.I.	C.G.	H.G.
34.2	99.7	39.7	At3g45730	823715	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
34.0	99.7	63.6	At2g29870	817537	major intrinsic family protein / MIP family protein	F:water channel activity;P:transport;C:membrane;BPMOFA	O.I.	C.G.	H.G.
32.3	99.7	25.1	At2g45460	819154	forkhead-associated domain-containing protein / FHA domain-containing protein	F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:chloroplast;MOBFPAV	O.I.	C.G.	H.G.
31.8	99.7	42.3	At4g37490	829904	CYCB1	Cyclin-dependent protein kinase CYCB1;1. Functions as an effector of growth control at G2/M. Regulated by TCP20.	O.I.	C.G.	H.G.
31.2	99.7	63.1	At5g38910	833883	germin-like protein, putative	F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFOB	O.I.	C.G.	H.G.
29.6	99.7	59.2	At1g51830	841610	ATP binding / kinase/ protein serine/threonine kinase	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:cellular_component unknown;PMOBFVA	O.I.	C.G.	H.G.
29.0	99.7	259.3	At4g33070	829444	pyruvate decarboxylase, putative	F:in 6 functions;P:unknown;C:membrane;BOFPAMV	O.I.	C.G.	H.G.
29.0	99.7	92.5	At5g37990	833778	S-adenosylmethionine-dependent methyltransferase/ methyltransferase	F:S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity;P:biological_process unknown;C:endomembrane system;POBMF	O.I.	C.G.	H.G.
27.9	99.7	27.2	At5g66130	836745	ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE)	Encodes a homolog to yeast RAD17. Involved in the regulation of DNA damage repair and homologous recombination. Mutant has increased sensitivity to MMS and increased telomere lengths.	O.I.	C.G.	H.G.
27.8	99.7	64.3	At5g10040	830868	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
27.6	99.7	11.5	At1g53990	841837	GLIP3	Contains lipase signature motif and GDSL domain.	O.I.	C.G.	H.G.
26.6	99.7	9.8	At2g23830	816915	vesicle-associated membrane protein, putative / VAMP, putative	F:structural molecule activity;P:biological_process unknown;C:cellular_component unknown;MPFO	O.I.	C.G.	H.G.
26.5	99.7	22.1	At4g11880	826795	AGL14 (agamous-like 14)	AGL12, AGL14, and AGL17 are all preferentially expressed in root tissues and therefore represent the only characterized MADS box genes expressed in roots.	O.I.	C.G.	H.G.
25.8	99.7	36.0	At2g31320	817690	PARP2 (POLY(ADP-RIBOSE) POLYMERASE 2)	Abiotic Stress-inducible gene.	O.I.	C.G.	H.G.
25.2	99.6	19.3	At4g15380	827204	CYP705A4	member of CYP705A	O.I.	C.G.	H.G.
24.8	99.6	20.0	At1g10050	837540	glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein	Encodes a putative glycosyl hydrolase family 10 protein (xylanase).	O.I.	C.G.	H.G.
24.6	99.6	35.0	At3g53150	824481	UGT73D1 (UDP-glucosyl transferase 73D1)	F:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity;P:metabolic process;C:endomembrane system;PMBVOF	O.I.	C.G.	H.G.
23.9	99.6	41.3	At1g02220	839476	ANAC003 (Arabidopsis NAC domain containing protein 3)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
23.5	99.6	320.9	At3g27060	822324	TSO2 (TSO meaning 'ugly' in Chinese)	Encodes one of the 3 ribonucleotide reductase (RNR) small subunit genes. TSO2 transcription occurs predominantly at the S-phase of the cell cycle and its expression pattern is consistent with its role in dNDP biosynthesis during DNA replication in actively dividing cells. Critical for cell cycle progression, DNA damage repair and plant development.	O.I.	C.G.	H.G.
23.3	99.6	50.0	At4g24110	828511	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
23.0	99.6	39.1	At2g46610	819273	arginine/serine-rich splicing factor, putative	F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBVA	O.I.	C.G.	H.G.
22.5	99.6	35.0	At2g28570	817405	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
22.3	99.6	10.0	At1g13330	837893	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBFAPV	O.I.	C.G.	H.G.
22.2	99.6	19.3	At5g49780	835041	ATP binding / kinase/ protein serine/threonine kinase	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:unknown;MPOBFVA	O.I.	C.G.	H.G.
22.1	99.6	100.9	At3g28510	822481	AAA-type ATPase family protein	F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;OMBFPAV	O.I.	C.G.	H.G.
21.8	99.6	10.7	At5g53990	835482	glycosyltransferase family protein	F:transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBOFV	O.I.	C.G.	H.G.
21.7	99.6	39.9	At1g01190	839233	CYP78A8	member of CYP78A	O.I.	C.G.	H.G.
21.2	99.6	6.6	At5g49110	834970	unknown protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;BMOFPV	O.I.	C.G.	H.G.
21.0	99.6	122.1	At1g43800	840977	acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative	F:acyl-[acyl-carrier-protein] desaturase activity, oxidoreductase activity, transition metal ion binding;P:fatty acid metabolic process, fatty acid biosynthetic process;C:membrane;PBOM	O.I.	C.G.	H.G.
20.9	99.6	63.8	At2g15120	3768033	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
20.6	99.6	51.9	At3g44540	823579	FAR4 (FATTY ACID REDUCTASE 4)	F:oxidoreductase activity, acting on the CH-CH group of donors, binding, catalytic activity;P:microsporogenesis, metabolic process;C:cellular_component unknown;MBPOF	O.I.	C.G.	H.G.
20.5	99.6	28.9	At3g04570	819613	DNA-binding protein-related	F:unknown;P:biological_process unknown;C:unknown;BPMOFVA	O.I.	C.G.	H.G.
20.4	99.6	44.6	At2g23030	816833	SNRK2.9 (SNF1-RELATED PROTEIN KINASE 2.9)	encodes a member of SNF1-related protein kinases (SnRK2)	O.I.	C.G.	H.G.
20.2	99.6	63.2	At5g11920	831065	AtcwINV6 (6-&1-fructan exohydrolase)	Encodes a protein with fructan exohydrolase (FEH) activity acting on both inulin and levan-type fructans (1- and 6-FEH). The enzyme does not have invertase activity.	O.I.	C.G.	H.G.
20.1	99.6	34.3	At4g22960	828395	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPB	O.I.	C.G.	H.G.
19.8	99.6	88.2	At1g56320	842085	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
19.6	99.6	24.0	At5g49770	835040	leucine-rich repeat transmembrane protein kinase, putative	F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
19.5	99.6	38.0	At2g35380	818105	peroxidase 20 (PER20) (P20)	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB	O.I.	C.G.	H.G.
19.4	99.6	114.1	At5g66985	836833	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
19.1	99.6	136.0	At5g59520	836071	ZIP2	encodes a metal ion transporter whose expression is regulated by copper.	O.I.	C.G.	H.G.
18.9	99.5	27.7	At2g47200	819333	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
18.4	99.5	23.7	At5g59530	836072	2-oxoglutarate-dependent dioxygenase, putative	F:transferase activity, transferring glycosyl groups;P:unknown;C:unknown;POBFM	O.I.	C.G.	H.G.
18.3	99.5	22.5	At3g22800	821851	leucine-rich repeat family protein / extensin family protein	F:structural constituent of cell wall, protein binding;P:unknown;C:endomembrane system;MPBOFVA	O.I.	C.G.	H.G.
18.1	99.5	160.4	At5g37740	833752	C2 domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFO	O.I.	C.G.	H.G.
17.8	99.5	77.3	At2g19590	816478	ACO1 (ACC OXIDASE 1)	encodes a protein whose sequence is similar to 1-aminocyclopropane-1-carboxylate oxidase	O.I.	C.G.	H.G.
17.6	99.5	20.8	At1g36640	840572	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
17.4	99.5	18.6	At5g11460	831017	senescence-associated protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
17.3	99.5	5.8	At3g21850	821739	ASK9 (ARABIDOPSIS SKP1-LIKE 9)	one of Arabidopsis SKP1 homologues	O.I.	C.G.	H.G.
17.2	99.5	36.5	At2g18360	816351	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:unknown;C:endomembrane system;BOMPFA	O.I.	C.G.	H.G.
17.1	99.5	29.1	At1g10990	837642	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
17.0	99.5	75.4	At4g20390	827787	integral membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
16.7	99.5	65.5	At2g17850	816295	-	F:molecular_function unknown;P:aging;C:endomembrane system;BOPAMF	O.I.	C.G.	H.G.
16.5	99.5	15.1	At1g78990	844239	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFB	O.I.	C.G.	H.G.
16.4	99.5	49.4	At5g63560	836475	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
16.4	99.5	42.4	At2g18140	816327	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:cell wall;PFOBM	O.I.	C.G.	H.G.
16.4	99.5	17.7	At5g42630	834270	ATS (ABERRANT TESTA SHAPE)	Encodes a member of the KANADI family of putative transcription factors. Involved in integument formation during ovule development and expressed at the boundary between the inner and outer integuments. It is essential for directing laminar growth of the inner integument.Along with KAN1 and KAN2, KAN4 is involved in proper localization of PIN1 in early embryogenesis.	O.I.	C.G.	H.G.
16.3	99.5	13.2	At5g39970	833994	catalytic	F:catalytic activity;P:biological_process unknown;C:anchored to membrane;OBPMAF	O.I.	C.G.	H.G.
16.3	99.5	11.1	At3g47675	2745949	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
16.2	99.5	219.6	At5g20830	832206	SUS1 (SUCROSE SYNTHASE 1)	Encodes a protein with sucrose synthase activity (SUS1).	O.I.	C.G.	H.G.
16.2	99.5	60.8	At3g26470	822252	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
16.2	99.5	53.7	At5g44550	834482	integral membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
16.2	99.5	12.2	At4g19980	827742	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
16.2	99.5	8.8	At3g12220	820402	scpl16 (serine carboxypeptidase-like 16)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO	O.I.	C.G.	H.G.
16.0	99.5	31.0	At2g29330	817482	TRI (tropinone reductase)	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAV	O.I.	C.G.	H.G.
15.9	99.5	27.6	At5g09290	830788	3'(2'),5'-bisphosphate nucleotidase, putative / inositol polyphosphate 1-phosphatase, putative	F:3'(2'),5'-bisphosphate nucleotidase activity, inositol or phosphatidylinositol phosphatase activity;P:sulfur metabolic process;C:unknown;BOMFPA	O.I.	C.G.	H.G.
15.8	99.5	36.5	At4g05200	825868	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
15.7	99.5	235.1	At3g01420	821135	DOX1	Encodes an alpha-dioxygenase involved in protection against oxidative stress and cell death. Induced in response to Salicylic acid and oxidative stress. Independent of NPR1 in induction by salicylic acid.	O.I.	C.G.	H.G.
15.7	99.5	57.4	At4g17670	827487	senescence-associated protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
15.6	99.5	69.0	At3g29970	822700	germination protein-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
15.4	99.5	41.7	At1g07500	837264	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
15.4	99.5	22.6	At5g48175	834870	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
15.3	99.4	149.1	At2g38860	818470	YLS5	Encodes protease I (pfpI)-like protein YLS5.	O.I.	C.G.	H.G.
15.3	99.4	64.7	At2g46750	819288	FAD-binding domain-containing protein	F:oxidoreductase activity, D-arabinono-1,4-lactone oxidase activity, FAD binding, catalytic activity;P:unknown;C:membrane;BOPFMA	O.I.	C.G.	H.G.
15.3	99.4	18.8	At4g37730	829929	AtbZIP7 (Arabidopsis thaliana basic leucine-zipper 7)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMOFB	O.I.	C.G.	H.G.
15.2	99.4	20.0	At5g06740	830563	lectin protein kinase family protein	F:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
15.1	99.4	12.5	At3g42860	823332	zinc knuckle (CCHC-type) family protein	F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;VMPFO	O.I.	C.G.	H.G.
15.0	99.4	113.6	At3g10500	820214	anac053 (Arabidopsis NAC domain containing protein 53)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PBOF	O.I.	C.G.	H.G.
15.0	99.4	109.5	At2g18370	816352	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.	O.I.	C.G.	H.G.
14.9	99.4	64.9	At2g23150	816847	NRAMP3 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 3)	Encodes a member of the Nramp2 metal transporter family; like its homolog Atnramp4, localized in vacuolar membrane. Seedlings of double mutant, atnramp3-1 atnramp4-1, were arrested at early germination.	O.I.	C.G.	H.G.
14.8	99.4	65.7	At2g48140	819426	EDA4 (embryo sac development arrest 4)	F:lipid binding;P:megagametogenesis, lipid transport;C:anchored to membrane;PBMOFV	O.I.	C.G.	H.G.
14.7	99.4	69.6	At1g59500	842240	GH3.4	encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro.	O.I.	C.G.	H.G.

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GSM ID	GSM131373
Assay name	AtGen_6-5421_Genotoxicstress-Roots-6.0h_Rep1
GSE experiment	GSE5625: AtGenExpress: Stress Treatments (Genotoxic stress)

Microarray experiments to specifically-expressed genes

GSM ID GSM131373 Assay name AtGen_6-5421_Genotoxicstress-Roots-6.0h_Rep1 GSE experiment GSE5625: AtGenExpress: Stress Treatments (Genotoxic stress)

GSM ID GSM131373

Assay name AtGen_6-5421_Genotoxicstress-Roots-6.0h_Rep1

GSE experiment GSE5625: AtGenExpress: Stress Treatments (Genotoxic stress)