Microarray experiments to specifically-expressed genes

GSM ID GSM131329
Assay name AtGen_6-3621_Saltstress-Roots-24.0h_Rep1
GSE experiment GSE5623: AtGenExpress: Stress Treatments (Salt stress)

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
843.4100.0110.2At4g16680827370RNA helicase, putativeF:in 7 functions;P:unknown;C:cellular_component unknown;MBOFVPAO.I.C.G.H.G.
521.5100.0103.5At2g18190816332AAA-type ATPase family proteinF:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:response to salt stress;C:endomembrane system;BOMFPAVO.I.C.G.H.G.
368.6100.0235.7At1g07430837255protein phosphatase 2C, putative / PP2C, putativeF:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;MPOFBVO.I.C.G.H.G.
328.0100.081.9At5g28520832945-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
325.2100.0257.4At1g01480837082ACS2a member of the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC 4.4.1.14) gene family, isolated from a flower-specific cDNA library.O.I.C.G.H.G.
289.9100.045.5At4g16820827388lipase class 3 family proteinF:triacylglycerol lipase activity;P:lipid metabolic process;C:unknown;POFBMVO.I.C.G.H.G.
288.7100.085.3At2g15780816073glycine-rich proteinF:electron carrier activity, copper ion binding;P:unknown;C:endomembrane system;MBOPFVAO.I.C.G.H.G.
281.2100.0110.9At1g49450841369transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:cellular_component unknown;MFOBPAO.I.C.G.H.G.
277.3100.0212.8At2g04050814939MATE efflux family proteinF:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMAO.I.C.G.H.G.
274.5100.029.9At2g318603768497-F:unknown;P:unknown;C:unknownO.I.C.G.H.G.
274.1100.044.2At1g71530843493protein kinase family proteinF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:chloroplast;MPOFBVAO.I.C.G.H.G.
259.4100.0101.6At1g12950837853MATE efflux family proteinF:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMAO.I.C.G.H.G.
246.9100.0290.5At1g32350840127AOX1D (alternative oxidase 1D)F:alternative oxidase activity;P:oxidation reduction, response to cyclopentenone;C:mitochondrial envelope, mitochondrion;OPFBMO.I.C.G.H.G.
217.4100.0179.1At1g02520839353PGP11 (P-GLYCOPROTEIN 11)F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:plasma membrane;BOMAFPVO.I.C.G.H.G.
215.9100.039.7At1g09930837525ATOPT2oligopeptide transporterO.I.C.G.H.G.
210.2100.053.1At4g11170826718disease resistance protein (TIR-NBS-LRR class), putativeF:protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:response to ozone, defense response;C:mitochondrion;PMBOFAO.I.C.G.H.G.
209.3100.040.1At3g63060825481EDL3 (EID1-like 3)F:unknown;P:unknown;C:unknown;PO.I.C.G.H.G.
206.2100.049.3At5g28510832944BGLU24 (BETA GLUCOSIDASE 24)F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFAO.I.C.G.H.G.
188.1100.0116.1At1g74870843826protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:unknown;C:unknown;MFPOBO.I.C.G.H.G.
187.5100.0476.8At3g50930824257BCS1 (CYTOCHROME BC1 SYNTHESIS)F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:mitochondrion, plastid;BOMFPAVO.I.C.G.H.G.
185.1100.0108.5At5g66640836796DAR3 (DA1-RELATED PROTEIN 3)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMBFO.I.C.G.H.G.
172.9100.0249.9At1g14730838038-F:unknown;P:unknown;C:endomembrane system, integral to membrane;MPOFO.I.C.G.H.G.
163.199.9153.4At3g47780823932ATATH6member of ATH subfamilyO.I.C.G.H.G.
163.099.954.9At2g29380817487protein phosphatase 2C, putative / PP2C, putativeF:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;MPOFBVO.I.C.G.H.G.
161.799.950.2At3g55090824675ATPase, coupled to transmembrane movement of substancesF:ATPase activity, coupled to transmembrane movement of substances;P:response to cyclopentenone;C:membrane;BOMAFPVO.I.C.G.H.G.
161.399.973.4At5g52400835316CYP715A1member of CYP715AO.I.C.G.H.G.
159.499.998.9At2g04070814943antiporter/ drug transporter/ transporterF:antiporter activity, drug transporter activity, transporter activity;P:transport, multidrug transport;C:membrane;BOPFMAO.I.C.G.H.G.
156.499.9237.0At2g32020817762GCN5-related N-acetyltransferase (GNAT) family proteinF:N-acetyltransferase activity;P:response to abscisic acid stimulus, metabolic process;C:cellular_component unknown;BOFPAVMO.I.C.G.H.G.
156.199.934.1At5g17460831612unknown proteinF:molecular_function unknown;P:response to salt stress;C:mitochondrion;OMFPBVO.I.C.G.H.G.
148.699.959.9At3g60120825182BGLU27 (BETA GLUCOSIDASE 27)F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cellular_component unknown;BOPMFAO.I.C.G.H.G.
148.499.975.9At3g14440820667NCED3 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 3)Encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. Regulated in response to drought and salinity. Expressed in roots, flowers and seeds. Localized to the chloroplast stroma and thylakoid membrane.O.I.C.G.H.G.
147.499.9370.3At4g37370829891CYP81D8member of CYP81DO.I.C.G.H.G.
144.499.948.1At3g30210822714MYB121 (MYB DOMAIN PROTEIN 121)Encodes a putative transcription factor, member of the R2R3 factor gene family (MYB121).O.I.C.G.H.G.
142.799.9356.6At2g03760814903STEncodes a brassinosteroid sulfotransferase. In vitro experiements show that this enzyme has a preference for 24-epibrassinosteroids, particularly 24-epicathasterone, but does not act on castasterone and brassinolide. It is differentially expressed during development, being more abundant in young seedlings and actively growing cell cultures. Expression is induced in response to salicylic acid and methyl jasmonate and bacterial pathogens.O.I.C.G.H.G.
139.599.937.5At3g13784820590AtcwINV5 (Arabidopsis thaliana cell wall invertase 5)F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:sucrose catabolic process, using beta-fructofuranosidase, carbohydrate metabolic process;C:endomembrane system;BPFOMAO.I.C.G.H.G.
124.299.932.7At5g66670836799unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;POBO.I.C.G.H.G.
122.599.9250.5At2g37870818363protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
122.599.9155.6At4g37900829946glycine-rich proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;BMPOFVAO.I.C.G.H.G.
118.799.9112.2At1g19250838508FMO1 (FLAVIN-DEPENDENT MONOOXYGENASE 1)FMO1 is required for full expression of TIR-NB-LRR–conditioned resistance to avirulent pathogens and for basal resistance to invasive virulent pathogens. Functions in an EDS1-regulated but SA-independent mechanism that promotes resistance and cell death at pathogen infection sites.O.I.C.G.H.G.
115.299.9187.6At2g30250817575WRKY25member of WRKY Transcription Factor; Group I. Located in nucleus. Involved in response to various abiotic stresses - especially salt stress.O.I.C.G.H.G.
114.199.922.1At4g14370827081phosphoinositide bindingF:phosphoinositide binding;P:signal transduction, defense response;C:intrinsic to membrane;PMOBFVAO.I.C.G.H.G.
113.699.929.4At3g54520824617unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMBO.I.C.G.H.G.
111.499.9163.4At5g62480836368ATGSTU9 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 9)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).O.I.C.G.H.G.
108.899.9161.4At1g23710838981unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBO.I.C.G.H.G.
104.299.9120.9At3g22830821854AT-HSFA6Bmember of Heat Stress Transcription Factor (Hsf) familyO.I.C.G.H.G.
103.899.992.5At1g68765843208IDA (INFLORESCENCE DEFICIENT IN ABSCISSION)Encodes a small protein of 77 amino acids. Loss of function mutations are defective in the process of ethylene independent floral organ abscission. Although the mutants have a normal appearing abscission zone, the floral organs do not abscisce. The peptide appears to be secreted and may function as a ligand. Arabidopsis 35S:IDA lines constitutively overexpressing IDA exhibit earlier abscission of floral organs, showing that the abscission zones are responsive to IDA soon after the opening of the flowers. In addition, ectopic abscission was observed at the bases of the pedicel, branches of the inflorescence, and cauline leaves. The silique valves also dehisced prematurely.O.I.C.G.H.G.
103.499.9198.2At5g40690834069-F:unknown;P:biological_process unknown;C:unknown;OMPFVBO.I.C.G.H.G.
102.599.943.8At2g46310819239CRF5 (CYTOKININ RESPONSE FACTOR 5)CRF5 encodes one of the six cytokinin response factors. It is transcriptionally upregulated in response to cytokinin. CRF5 belongs to the AP2/ERF superfamily of the transcriptional factors. CRF proteins rapidly relocalize to the nucleus in response to cytokinin. Analysis of loos-of-function mutants revealed that the CRFs function redundantly to regulate the development of embryos, cotyledons and leaves.O.I.C.G.H.G.
99.599.968.0At3g11020820273DREB2B (DRE/CRT-BINDING PROTEIN 2B)encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family (DREB2B). The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A.O.I.C.G.H.G.
98.499.9166.7At3g25250822119AGC2-1 (OXIDATIVE SIGNAL-INDUCIBLE1)Arabidopsis protein kinaseO.I.C.G.H.G.
96.899.9189.2At1g59590842249ZCF37ZCF37 mRNA, complete cdsO.I.C.G.H.G.
94.399.940.0At1g61280842422-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPO.I.C.G.H.G.
90.799.9200.5At4g22590828355trehalose-6-phosphate phosphatase, putativeF:catalytic activity, trehalose-phosphatase activity;P:trehalose biosynthetic process, metabolic process;C:chloroplast;BPMOFAO.I.C.G.H.G.
89.499.969.2At2g44070819013GTP binding / translation initiation factorF:GTP binding, translation initiation factor activity;P:translational initiation, cellular metabolic process;C:eukaryotic translation initiation factor 2B complex;OBMFAPO.I.C.G.H.G.
87.899.942.3At5g40010833998AATP1 (AAA-ATPase 1)F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;OMBFPAVO.I.C.G.H.G.
86.899.968.1At4g04960825837lectin protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
85.199.961.0At4g04490825779protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
85.099.947.1At2g46150819222-F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PFO.I.C.G.H.G.
83.699.9138.2At4g17030827411ATEXLB1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE B1)EXPANSIN-RELATED. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)O.I.C.G.H.G.
83.199.9124.7At5g42830834294transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO.I.C.G.H.G.
82.499.9393.3At2g41730818772unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
81.599.931.1At1g55390841986DC1 domain-containing proteinF:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;BOMPFVAO.I.C.G.H.G.
79.099.955.1At5g51630835237disease resistance protein (TIR-NBS-LRR class), putativeF:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAO.I.C.G.H.G.
78.899.940.3At3g171103768803-F:unknown;P:unknown;C:unknownO.I.C.G.H.G.
77.999.917.3At5g48530834909unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PO.I.C.G.H.G.
75.899.992.5At1g21850838787sks8 (SKU5 Similar 8)F:oxidoreductase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOAO.I.C.G.H.G.
75.899.932.8At3g14225820641GLIP4Contains lipase signature motif and GDSL domain.O.I.C.G.H.G.
75.499.928.2At4g28110828927AtMYB41 (myb domain protein 41)Member of the R2R3 factor gene family. Expression is induced in response to dessication, ABA and salt treatment. Overexpression of Myb41 results in abnormal cuticle development and decreased cell expansion.O.I.C.G.H.G.
75.299.918.3At3g50940824258AAA-type ATPase family proteinF:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:endomembrane system;BOMFPAVO.I.C.G.H.G.
74.099.944.2At5g54230835511MYB49 (myb domain protein 49)Encodes a putative transcription factor (MYB49).O.I.C.G.H.G.
73.599.968.2At4g39830830142L-ascorbate oxidase, putativeF:oxidoreductase activity, L-ascorbate oxidase activity, copper ion binding;P:oxidation reduction;C:endomembrane system, extracellular region;BFPMOAO.I.C.G.H.G.
72.199.969.8At3g48510824010unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
69.599.940.0At1g686903767664ATP binding / protein kinase/ protein serine/threonine kinaseF:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplastO.I.C.G.H.G.
69.299.936.3At2g32930817855ZFN2 (ZINC FINGER NUCLEASE 2)Encodes a zinc finger protein.O.I.C.G.H.G.
69.199.9172.7At1g10170837555ATNFXL1 (ARABIDOPSIS THALIANA NF-X-LIKE 1)Encodes AtNFXL1, a homologue of the putative human transcription repressor NF-X1. Functions as a negative regulator of the trichothecene phytotoxin-induced defense response.O.I.C.G.H.G.
68.399.954.8At3g55740824740PROT2 (PROLINE TRANSPORTER 2)Encodes a proline transporter with affinity for gly betaine, proline, and GABA. Protein is expressed most highly in the roots.O.I.C.G.H.G.
65.899.888.5At3g53600824528zinc finger (C2H2 type) family proteinF:transcription factor activity, zinc ion binding, nucleic acid binding;P:response to chitin, regulation of transcription;C:intracellular;PMFO.I.C.G.H.G.
65.699.812.0At4g11480826753protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
65.599.8142.6At3g62260825399protein phosphatase 2C, putative / PP2C, putativeF:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;MPOFBVAO.I.C.G.H.G.
64.599.8180.9At4g33550829494lipid bindingF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
61.599.8160.9At5g11110830979ATSPS2F (SUCROSE PHOSPHATE SYNTHASE 2F)Encodes a protein with putative sucrose-phosphate synthase activity.Involved in pollen exine formation.O.I.C.G.H.G.
61.399.854.2At3g06490819827MYB108 (myb domain protein 108)putative transcription factor MYB108 (MYB108) mRNA,O.I.C.G.H.G.
61.399.853.3At5g46910834736transcription factor jumonji (jmj) family proteinF:transcription factor activity;P:response to chitin, regulation of transcription;C:nucleus;MFPOO.I.C.G.H.G.
61.299.882.0At2g18140816327peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:cell wall;PFOBMO.I.C.G.H.G.
58.999.833.9At2g21900816726WRKY59member of WRKY Transcription Factor; Group II-cO.I.C.G.H.G.
58.499.845.8At5g46350834678WRKY8member of WRKY Transcription Factor; Group II-cO.I.C.G.H.G.
58.399.843.8At2g26380817178disease resistance protein-related / LRR protein-relatedF:protein binding;P:signal transduction, defense response;C:endomembrane system;PMOBFAVO.I.C.G.H.G.
58.299.8108.1At1g05060839336unknown proteinF:molecular_function unknown;P:unknown;C:cellular_component unknown;PO.I.C.G.H.G.
57.499.8125.3At2g46750819288FAD-binding domain-containing proteinF:oxidoreductase activity, D-arabinono-1,4-lactone oxidase activity, FAD binding, catalytic activity;P:unknown;C:membrane;BOPFMAO.I.C.G.H.G.
56.499.841.8At5g43380834356TOPP6encodes a type I serine/threonine protein phosphatase expressed in expressed in roots, rosettes and flowers.O.I.C.G.H.G.
56.099.835.4At2g25460817084-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
56.099.820.6At5g40990834101GLIP1 (GDSL LIPASE1)Component of plant resistance. Contains lipase signature motif and GDSL domain. Directly interferes with the fungal infection process by acting on fungal cell walls through its action as a antimicrobial compound. Critical component for both local and systemic resistance responses in the incompatible interaction with Alternaria brassicicola in the ethylene-dependent pathway.O.I.C.G.H.G.
55.799.8387.4At2g05440815093glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVAO.I.C.G.H.G.
55.599.817.7At1g42980840896formin homology 2 domain-containing protein / FH2 domain-containing proteinF:actin binding;P:unknown;C:endomembrane system;MPOFO.I.C.G.H.G.
52.999.858.1At1g60470842342AtGolS4 (Arabidopsis thaliana galactinol synthase 4)F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:carbohydrate biosynthetic process;C:cellular_component unknown;PMFVBOO.I.C.G.H.G.
52.299.896.2At1g71330843474ATNAP5member of NAP subfamilyO.I.C.G.H.G.
52.099.8153.6At5g14730831325unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO.I.C.G.H.G.
51.899.875.9At2g47520819365AP2 domain-containing transcription factor, putativeencodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.O.I.C.G.H.G.
51.099.8320.5At2g38470818429WRKY33Member of the plant WRKY transcription factor family. Regulates the antagonistic relationship between defense pathways mediating responses to P. syringae and necrotrophic fungal pathogens. Located in nucleus. Involved in response to various abiotic stresses - especially salt stress.O.I.C.G.H.G.
50.799.8157.7At1g14540838016anionic peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBMO.I.C.G.H.G.



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