CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM131329

Assay name AtGen_6-3621_Saltstress-Roots-24.0h_Rep1

GSE experiment GSE5623: AtGenExpress: Stress Treatments (Salt stress)

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
843.4 100.0 110.2 At4g16680 827370 RNA helicase, putative F:in 7 functions;P:unknown;C:cellular_component unknown;MBOFVPA O.I. C.G. H.G.
521.5 100.0 103.5 At2g18190 816332 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:response to salt stress;C:endomembrane system;BOMFPAV O.I. C.G. H.G.
368.6 100.0 235.7 At1g07430 837255 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;MPOFBV O.I. C.G. H.G.
328.0 100.0 81.9 At5g28520 832945 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
325.2 100.0 257.4 At1g01480 837082 ACS2 a member of the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC 4.4.1.14) gene family, isolated from a flower-specific cDNA library. O.I. C.G. H.G.
289.9 100.0 45.5 At4g16820 827388 lipase class 3 family protein F:triacylglycerol lipase activity;P:lipid metabolic process;C:unknown;POFBMV O.I. C.G. H.G.
288.7 100.0 85.3 At2g15780 816073 glycine-rich protein F:electron carrier activity, copper ion binding;P:unknown;C:endomembrane system;MBOPFVA O.I. C.G. H.G.
281.2 100.0 110.9 At1g49450 841369 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:cellular_component unknown;MFOBPA O.I. C.G. H.G.
277.3 100.0 212.8 At2g04050 814939 MATE efflux family protein F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMA O.I. C.G. H.G.
274.5 100.0 29.9 At2g31860 3768497 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
274.1 100.0 44.2 At1g71530 843493 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:chloroplast;MPOFBVA O.I. C.G. H.G.
259.4 100.0 101.6 At1g12950 837853 MATE efflux family protein F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMA O.I. C.G. H.G.
246.9 100.0 290.5 At1g32350 840127 AOX1D (alternative oxidase 1D) F:alternative oxidase activity;P:oxidation reduction, response to cyclopentenone;C:mitochondrial envelope, mitochondrion;OPFBM O.I. C.G. H.G.
217.4 100.0 179.1 At1g02520 839353 PGP11 (P-GLYCOPROTEIN 11) F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:plasma membrane;BOMAFPV O.I. C.G. H.G.
215.9 100.0 39.7 At1g09930 837525 ATOPT2 oligopeptide transporter O.I. C.G. H.G.
210.2 100.0 53.1 At4g11170 826718 disease resistance protein (TIR-NBS-LRR class), putative F:protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:response to ozone, defense response;C:mitochondrion;PMBOFA O.I. C.G. H.G.
209.3 100.0 40.1 At3g63060 825481 EDL3 (EID1-like 3) F:unknown;P:unknown;C:unknown;P O.I. C.G. H.G.
206.2 100.0 49.3 At5g28510 832944 BGLU24 (BETA GLUCOSIDASE 24) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA O.I. C.G. H.G.
188.1 100.0 116.1 At1g74870 843826 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:unknown;C:unknown;MFPOB O.I. C.G. H.G.
187.5 100.0 476.8 At3g50930 824257 BCS1 (CYTOCHROME BC1 SYNTHESIS) F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:mitochondrion, plastid;BOMFPAV O.I. C.G. H.G.
185.1 100.0 108.5 At5g66640 836796 DAR3 (DA1-RELATED PROTEIN 3) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMBF O.I. C.G. H.G.
172.9 100.0 249.9 At1g14730 838038 - F:unknown;P:unknown;C:endomembrane system, integral to membrane;MPOF O.I. C.G. H.G.
163.1 99.9 153.4 At3g47780 823932 ATATH6 member of ATH subfamily O.I. C.G. H.G.
163.0 99.9 54.9 At2g29380 817487 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;MPOFBV O.I. C.G. H.G.
161.7 99.9 50.2 At3g55090 824675 ATPase, coupled to transmembrane movement of substances F:ATPase activity, coupled to transmembrane movement of substances;P:response to cyclopentenone;C:membrane;BOMAFPV O.I. C.G. H.G.
161.3 99.9 73.4 At5g52400 835316 CYP715A1 member of CYP715A O.I. C.G. H.G.
159.4 99.9 98.9 At2g04070 814943 antiporter/ drug transporter/ transporter F:antiporter activity, drug transporter activity, transporter activity;P:transport, multidrug transport;C:membrane;BOPFMA O.I. C.G. H.G.
156.4 99.9 237.0 At2g32020 817762 GCN5-related N-acetyltransferase (GNAT) family protein F:N-acetyltransferase activity;P:response to abscisic acid stimulus, metabolic process;C:cellular_component unknown;BOFPAVM O.I. C.G. H.G.
156.1 99.9 34.1 At5g17460 831612 unknown protein F:molecular_function unknown;P:response to salt stress;C:mitochondrion;OMFPBV O.I. C.G. H.G.
148.6 99.9 59.9 At3g60120 825182 BGLU27 (BETA GLUCOSIDASE 27) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cellular_component unknown;BOPMFA O.I. C.G. H.G.
148.4 99.9 75.9 At3g14440 820667 NCED3 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 3) Encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. Regulated in response to drought and salinity. Expressed in roots, flowers and seeds. Localized to the chloroplast stroma and thylakoid membrane. O.I. C.G. H.G.
147.4 99.9 370.3 At4g37370 829891 CYP81D8 member of CYP81D O.I. C.G. H.G.
144.4 99.9 48.1 At3g30210 822714 MYB121 (MYB DOMAIN PROTEIN 121) Encodes a putative transcription factor, member of the R2R3 factor gene family (MYB121). O.I. C.G. H.G.
142.7 99.9 356.6 At2g03760 814903 ST Encodes a brassinosteroid sulfotransferase. In vitro experiements show that this enzyme has a preference for 24-epibrassinosteroids, particularly 24-epicathasterone, but does not act on castasterone and brassinolide. It is differentially expressed during development, being more abundant in young seedlings and actively growing cell cultures. Expression is induced in response to salicylic acid and methyl jasmonate and bacterial pathogens. O.I. C.G. H.G.
139.5 99.9 37.5 At3g13784 820590 AtcwINV5 (Arabidopsis thaliana cell wall invertase 5) F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:sucrose catabolic process, using beta-fructofuranosidase, carbohydrate metabolic process;C:endomembrane system;BPFOMA O.I. C.G. H.G.
124.2 99.9 32.7 At5g66670 836799 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POB O.I. C.G. H.G.
122.5 99.9 250.5 At2g37870 818363 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
122.5 99.9 155.6 At4g37900 829946 glycine-rich protein F:unknown;P:biological_process unknown;C:cellular_component unknown;BMPOFVA O.I. C.G. H.G.
118.7 99.9 112.2 At1g19250 838508 FMO1 (FLAVIN-DEPENDENT MONOOXYGENASE 1) FMO1 is required for full expression of TIR-NB-LRR�conditioned resistance to avirulent pathogens and for basal resistance to invasive virulent pathogens. Functions in an EDS1-regulated but SA-independent mechanism that promotes resistance and cell death at pathogen infection sites. O.I. C.G. H.G.
115.2 99.9 187.6 At2g30250 817575 WRKY25 member of WRKY Transcription Factor; Group I. Located in nucleus. Involved in response to various abiotic stresses - especially salt stress. O.I. C.G. H.G.
114.1 99.9 22.1 At4g14370 827081 phosphoinositide binding F:phosphoinositide binding;P:signal transduction, defense response;C:intrinsic to membrane;PMOBFVA O.I. C.G. H.G.
113.6 99.9 29.4 At3g54520 824617 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMB O.I. C.G. H.G.
111.4 99.9 163.4 At5g62480 836368 ATGSTU9 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 9) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
108.8 99.9 161.4 At1g23710 838981 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFB O.I. C.G. H.G.
104.2 99.9 120.9 At3g22830 821854 AT-HSFA6B member of Heat Stress Transcription Factor (Hsf) family O.I. C.G. H.G.
103.8 99.9 92.5 At1g68765 843208 IDA (INFLORESCENCE DEFICIENT IN ABSCISSION) Encodes a small protein of 77 amino acids. Loss of function mutations are defective in the process of ethylene independent floral organ abscission. Although the mutants have a normal appearing abscission zone, the floral organs do not abscisce. The peptide appears to be secreted and may function as a ligand. Arabidopsis 35S:IDA lines constitutively overexpressing IDA exhibit earlier abscission of floral organs, showing that the abscission zones are responsive to IDA soon after the opening of the flowers. In addition, ectopic abscission was observed at the bases of the pedicel, branches of the inflorescence, and cauline leaves. The silique valves also dehisced prematurely. O.I. C.G. H.G.
103.4 99.9 198.2 At5g40690 834069 - F:unknown;P:biological_process unknown;C:unknown;OMPFVB O.I. C.G. H.G.
102.5 99.9 43.8 At2g46310 819239 CRF5 (CYTOKININ RESPONSE FACTOR 5) CRF5 encodes one of the six cytokinin response factors. It is transcriptionally upregulated in response to cytokinin. CRF5 belongs to the AP2/ERF superfamily of the transcriptional factors. CRF proteins rapidly relocalize to the nucleus in response to cytokinin. Analysis of loos-of-function mutants revealed that the CRFs function redundantly to regulate the development of embryos, cotyledons and leaves. O.I. C.G. H.G.
99.5 99.9 68.0 At3g11020 820273 DREB2B (DRE/CRT-BINDING PROTEIN 2B) encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family (DREB2B). The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A. O.I. C.G. H.G.
98.4 99.9 166.7 At3g25250 822119 AGC2-1 (OXIDATIVE SIGNAL-INDUCIBLE1) Arabidopsis protein kinase O.I. C.G. H.G.
96.8 99.9 189.2 At1g59590 842249 ZCF37 ZCF37 mRNA, complete cds O.I. C.G. H.G.
94.3 99.9 40.0 At1g61280 842422 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP O.I. C.G. H.G.
90.7 99.9 200.5 At4g22590 828355 trehalose-6-phosphate phosphatase, putative F:catalytic activity, trehalose-phosphatase activity;P:trehalose biosynthetic process, metabolic process;C:chloroplast;BPMOFA O.I. C.G. H.G.
89.4 99.9 69.2 At2g44070 819013 GTP binding / translation initiation factor F:GTP binding, translation initiation factor activity;P:translational initiation, cellular metabolic process;C:eukaryotic translation initiation factor 2B complex;OBMFAP O.I. C.G. H.G.
87.8 99.9 42.3 At5g40010 833998 AATP1 (AAA-ATPase 1) F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;OMBFPAV O.I. C.G. H.G.
86.8 99.9 68.1 At4g04960 825837 lectin protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
85.1 99.9 61.0 At4g04490 825779 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
85.0 99.9 47.1 At2g46150 819222 - F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PF O.I. C.G. H.G.
83.6 99.9 138.2 At4g17030 827411 ATEXLB1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE B1) EXPANSIN-RELATED. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) O.I. C.G. H.G.
83.1 99.9 124.7 At5g42830 834294 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PF O.I. C.G. H.G.
82.4 99.9 393.3 At2g41730 818772 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
81.5 99.9 31.1 At1g55390 841986 DC1 domain-containing protein F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;BOMPFVA O.I. C.G. H.G.
79.0 99.9 55.1 At5g51630 835237 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFA O.I. C.G. H.G.
78.8 99.9 40.3 At3g17110 3768803 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
77.9 99.9 17.3 At5g48530 834909 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P O.I. C.G. H.G.
75.8 99.9 92.5 At1g21850 838787 sks8 (SKU5 Similar 8) F:oxidoreductase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOA O.I. C.G. H.G.
75.8 99.9 32.8 At3g14225 820641 GLIP4 Contains lipase signature motif and GDSL domain. O.I. C.G. H.G.
75.4 99.9 28.2 At4g28110 828927 AtMYB41 (myb domain protein 41) Member of the R2R3 factor gene family. Expression is induced in response to dessication, ABA and salt treatment. Overexpression of Myb41 results in abnormal cuticle development and decreased cell expansion. O.I. C.G. H.G.
75.2 99.9 18.3 At3g50940 824258 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:endomembrane system;BOMFPAV O.I. C.G. H.G.
74.0 99.9 44.2 At5g54230 835511 MYB49 (myb domain protein 49) Encodes a putative transcription factor (MYB49). O.I. C.G. H.G.
73.5 99.9 68.2 At4g39830 830142 L-ascorbate oxidase, putative F:oxidoreductase activity, L-ascorbate oxidase activity, copper ion binding;P:oxidation reduction;C:endomembrane system, extracellular region;BFPMOA O.I. C.G. H.G.
72.1 99.9 69.8 At3g48510 824010 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
69.5 99.9 40.0 At1g68690 3767664 ATP binding / protein kinase/ protein serine/threonine kinase F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast O.I. C.G. H.G.
69.2 99.9 36.3 At2g32930 817855 ZFN2 (ZINC FINGER NUCLEASE 2) Encodes a zinc finger protein. O.I. C.G. H.G.
69.1 99.9 172.7 At1g10170 837555 ATNFXL1 (ARABIDOPSIS THALIANA NF-X-LIKE 1) Encodes AtNFXL1, a homologue of the putative human transcription repressor NF-X1. Functions as a negative regulator of the trichothecene phytotoxin-induced defense response. O.I. C.G. H.G.
68.3 99.9 54.8 At3g55740 824740 PROT2 (PROLINE TRANSPORTER 2) Encodes a proline transporter with affinity for gly betaine, proline, and GABA. Protein is expressed most highly in the roots. O.I. C.G. H.G.
65.8 99.8 88.5 At3g53600 824528 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:response to chitin, regulation of transcription;C:intracellular;PMF O.I. C.G. H.G.
65.6 99.8 12.0 At4g11480 826753 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
65.5 99.8 142.6 At3g62260 825399 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;MPOFBVA O.I. C.G. H.G.
64.5 99.8 180.9 At4g33550 829494 lipid binding F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
61.5 99.8 160.9 At5g11110 830979 ATSPS2F (SUCROSE PHOSPHATE SYNTHASE 2F) Encodes a protein with putative sucrose-phosphate synthase activity.Involved in pollen exine formation. O.I. C.G. H.G.
61.3 99.8 54.2 At3g06490 819827 MYB108 (myb domain protein 108) putative transcription factor MYB108 (MYB108) mRNA, O.I. C.G. H.G.
61.3 99.8 53.3 At5g46910 834736 transcription factor jumonji (jmj) family protein F:transcription factor activity;P:response to chitin, regulation of transcription;C:nucleus;MFPO O.I. C.G. H.G.
61.2 99.8 82.0 At2g18140 816327 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:cell wall;PFOBM O.I. C.G. H.G.
58.9 99.8 33.9 At2g21900 816726 WRKY59 member of WRKY Transcription Factor; Group II-c O.I. C.G. H.G.
58.4 99.8 45.8 At5g46350 834678 WRKY8 member of WRKY Transcription Factor; Group II-c O.I. C.G. H.G.
58.3 99.8 43.8 At2g26380 817178 disease resistance protein-related / LRR protein-related F:protein binding;P:signal transduction, defense response;C:endomembrane system;PMOBFAV O.I. C.G. H.G.
58.2 99.8 108.1 At1g05060 839336 unknown protein F:molecular_function unknown;P:unknown;C:cellular_component unknown;P O.I. C.G. H.G.
57.4 99.8 125.3 At2g46750 819288 FAD-binding domain-containing protein F:oxidoreductase activity, D-arabinono-1,4-lactone oxidase activity, FAD binding, catalytic activity;P:unknown;C:membrane;BOPFMA O.I. C.G. H.G.
56.4 99.8 41.8 At5g43380 834356 TOPP6 encodes a type I serine/threonine protein phosphatase expressed in expressed in roots, rosettes and flowers. O.I. C.G. H.G.
56.0 99.8 35.4 At2g25460 817084 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
56.0 99.8 20.6 At5g40990 834101 GLIP1 (GDSL LIPASE1) Component of plant resistance. Contains lipase signature motif and GDSL domain. Directly interferes with the fungal infection process by acting on fungal cell walls through its action as a antimicrobial compound. Critical component for both local and systemic resistance responses in the incompatible interaction with Alternaria brassicicola in the ethylene-dependent pathway. O.I. C.G. H.G.
55.7 99.8 387.4 At2g05440 815093 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVA O.I. C.G. H.G.
55.5 99.8 17.7 At1g42980 840896 formin homology 2 domain-containing protein / FH2 domain-containing protein F:actin binding;P:unknown;C:endomembrane system;MPOF O.I. C.G. H.G.
52.9 99.8 58.1 At1g60470 842342 AtGolS4 (Arabidopsis thaliana galactinol synthase 4) F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:carbohydrate biosynthetic process;C:cellular_component unknown;PMFVBO O.I. C.G. H.G.
52.2 99.8 96.2 At1g71330 843474 ATNAP5 member of NAP subfamily O.I. C.G. H.G.
52.0 99.8 153.6 At5g14730 831325 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB O.I. C.G. H.G.
51.8 99.8 75.9 At2g47520 819365 AP2 domain-containing transcription factor, putative encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12. O.I. C.G. H.G.
51.0 99.8 320.5 At2g38470 818429 WRKY33 Member of the plant WRKY transcription factor family. Regulates the antagonistic relationship between defense pathways mediating responses to P. syringae and necrotrophic fungal pathogens. Located in nucleus. Involved in response to various abiotic stresses - especially salt stress. O.I. C.G. H.G.
50.7 99.8 157.7 At1g14540 838016 anionic peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
843.4	100.0	110.2	At4g16680	827370	RNA helicase, putative	F:in 7 functions;P:unknown;C:cellular_component unknown;MBOFVPA	O.I.	C.G.	H.G.
521.5	100.0	103.5	At2g18190	816332	AAA-type ATPase family protein	F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:response to salt stress;C:endomembrane system;BOMFPAV	O.I.	C.G.	H.G.
368.6	100.0	235.7	At1g07430	837255	protein phosphatase 2C, putative / PP2C, putative	F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;MPOFBV	O.I.	C.G.	H.G.
328.0	100.0	81.9	At5g28520	832945	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
325.2	100.0	257.4	At1g01480	837082	ACS2	a member of the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC 4.4.1.14) gene family, isolated from a flower-specific cDNA library.	O.I.	C.G.	H.G.
289.9	100.0	45.5	At4g16820	827388	lipase class 3 family protein	F:triacylglycerol lipase activity;P:lipid metabolic process;C:unknown;POFBMV	O.I.	C.G.	H.G.
288.7	100.0	85.3	At2g15780	816073	glycine-rich protein	F:electron carrier activity, copper ion binding;P:unknown;C:endomembrane system;MBOPFVA	O.I.	C.G.	H.G.
281.2	100.0	110.9	At1g49450	841369	transducin family protein / WD-40 repeat family protein	F:nucleotide binding;P:biological_process unknown;C:cellular_component unknown;MFOBPA	O.I.	C.G.	H.G.
277.3	100.0	212.8	At2g04050	814939	MATE efflux family protein	F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMA	O.I.	C.G.	H.G.
274.5	100.0	29.9	At2g31860	3768497	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
274.1	100.0	44.2	At1g71530	843493	protein kinase family protein	F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:chloroplast;MPOFBVA	O.I.	C.G.	H.G.
259.4	100.0	101.6	At1g12950	837853	MATE efflux family protein	F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMA	O.I.	C.G.	H.G.
246.9	100.0	290.5	At1g32350	840127	AOX1D (alternative oxidase 1D)	F:alternative oxidase activity;P:oxidation reduction, response to cyclopentenone;C:mitochondrial envelope, mitochondrion;OPFBM	O.I.	C.G.	H.G.
217.4	100.0	179.1	At1g02520	839353	PGP11 (P-GLYCOPROTEIN 11)	F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:plasma membrane;BOMAFPV	O.I.	C.G.	H.G.
215.9	100.0	39.7	At1g09930	837525	ATOPT2	oligopeptide transporter	O.I.	C.G.	H.G.
210.2	100.0	53.1	At4g11170	826718	disease resistance protein (TIR-NBS-LRR class), putative	F:protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:response to ozone, defense response;C:mitochondrion;PMBOFA	O.I.	C.G.	H.G.
209.3	100.0	40.1	At3g63060	825481	EDL3 (EID1-like 3)	F:unknown;P:unknown;C:unknown;P	O.I.	C.G.	H.G.
206.2	100.0	49.3	At5g28510	832944	BGLU24 (BETA GLUCOSIDASE 24)	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA	O.I.	C.G.	H.G.
188.1	100.0	116.1	At1g74870	843826	protein binding / zinc ion binding	F:protein binding, zinc ion binding;P:unknown;C:unknown;MFPOB	O.I.	C.G.	H.G.
187.5	100.0	476.8	At3g50930	824257	BCS1 (CYTOCHROME BC1 SYNTHESIS)	F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:mitochondrion, plastid;BOMFPAV	O.I.	C.G.	H.G.
185.1	100.0	108.5	At5g66640	836796	DAR3 (DA1-RELATED PROTEIN 3)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMBF	O.I.	C.G.	H.G.
172.9	100.0	249.9	At1g14730	838038	-	F:unknown;P:unknown;C:endomembrane system, integral to membrane;MPOF	O.I.	C.G.	H.G.
163.1	99.9	153.4	At3g47780	823932	ATATH6	member of ATH subfamily	O.I.	C.G.	H.G.
163.0	99.9	54.9	At2g29380	817487	protein phosphatase 2C, putative / PP2C, putative	F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;MPOFBV	O.I.	C.G.	H.G.
161.7	99.9	50.2	At3g55090	824675	ATPase, coupled to transmembrane movement of substances	F:ATPase activity, coupled to transmembrane movement of substances;P:response to cyclopentenone;C:membrane;BOMAFPV	O.I.	C.G.	H.G.
161.3	99.9	73.4	At5g52400	835316	CYP715A1	member of CYP715A	O.I.	C.G.	H.G.
159.4	99.9	98.9	At2g04070	814943	antiporter/ drug transporter/ transporter	F:antiporter activity, drug transporter activity, transporter activity;P:transport, multidrug transport;C:membrane;BOPFMA	O.I.	C.G.	H.G.
156.4	99.9	237.0	At2g32020	817762	GCN5-related N-acetyltransferase (GNAT) family protein	F:N-acetyltransferase activity;P:response to abscisic acid stimulus, metabolic process;C:cellular_component unknown;BOFPAVM	O.I.	C.G.	H.G.
156.1	99.9	34.1	At5g17460	831612	unknown protein	F:molecular_function unknown;P:response to salt stress;C:mitochondrion;OMFPBV	O.I.	C.G.	H.G.
148.6	99.9	59.9	At3g60120	825182	BGLU27 (BETA GLUCOSIDASE 27)	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cellular_component unknown;BOPMFA	O.I.	C.G.	H.G.
148.4	99.9	75.9	At3g14440	820667	NCED3 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 3)	Encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. Regulated in response to drought and salinity. Expressed in roots, flowers and seeds. Localized to the chloroplast stroma and thylakoid membrane.	O.I.	C.G.	H.G.
147.4	99.9	370.3	At4g37370	829891	CYP81D8	member of CYP81D	O.I.	C.G.	H.G.
144.4	99.9	48.1	At3g30210	822714	MYB121 (MYB DOMAIN PROTEIN 121)	Encodes a putative transcription factor, member of the R2R3 factor gene family (MYB121).	O.I.	C.G.	H.G.
142.7	99.9	356.6	At2g03760	814903	ST	Encodes a brassinosteroid sulfotransferase. In vitro experiements show that this enzyme has a preference for 24-epibrassinosteroids, particularly 24-epicathasterone, but does not act on castasterone and brassinolide. It is differentially expressed during development, being more abundant in young seedlings and actively growing cell cultures. Expression is induced in response to salicylic acid and methyl jasmonate and bacterial pathogens.	O.I.	C.G.	H.G.
139.5	99.9	37.5	At3g13784	820590	AtcwINV5 (Arabidopsis thaliana cell wall invertase 5)	F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:sucrose catabolic process, using beta-fructofuranosidase, carbohydrate metabolic process;C:endomembrane system;BPFOMA	O.I.	C.G.	H.G.
124.2	99.9	32.7	At5g66670	836799	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POB	O.I.	C.G.	H.G.
122.5	99.9	250.5	At2g37870	818363	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
122.5	99.9	155.6	At4g37900	829946	glycine-rich protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;BMPOFVA	O.I.	C.G.	H.G.
118.7	99.9	112.2	At1g19250	838508	FMO1 (FLAVIN-DEPENDENT MONOOXYGENASE 1)	FMO1 is required for full expression of TIR-NB-LRR�conditioned resistance to avirulent pathogens and for basal resistance to invasive virulent pathogens. Functions in an EDS1-regulated but SA-independent mechanism that promotes resistance and cell death at pathogen infection sites.	O.I.	C.G.	H.G.
115.2	99.9	187.6	At2g30250	817575	WRKY25	member of WRKY Transcription Factor; Group I. Located in nucleus. Involved in response to various abiotic stresses - especially salt stress.	O.I.	C.G.	H.G.
114.1	99.9	22.1	At4g14370	827081	phosphoinositide binding	F:phosphoinositide binding;P:signal transduction, defense response;C:intrinsic to membrane;PMOBFVA	O.I.	C.G.	H.G.
113.6	99.9	29.4	At3g54520	824617	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMB	O.I.	C.G.	H.G.
111.4	99.9	163.4	At5g62480	836368	ATGSTU9 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 9)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
108.8	99.9	161.4	At1g23710	838981	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFB	O.I.	C.G.	H.G.
104.2	99.9	120.9	At3g22830	821854	AT-HSFA6B	member of Heat Stress Transcription Factor (Hsf) family	O.I.	C.G.	H.G.
103.8	99.9	92.5	At1g68765	843208	IDA (INFLORESCENCE DEFICIENT IN ABSCISSION)	Encodes a small protein of 77 amino acids. Loss of function mutations are defective in the process of ethylene independent floral organ abscission. Although the mutants have a normal appearing abscission zone, the floral organs do not abscisce. The peptide appears to be secreted and may function as a ligand. Arabidopsis 35S:IDA lines constitutively overexpressing IDA exhibit earlier abscission of floral organs, showing that the abscission zones are responsive to IDA soon after the opening of the flowers. In addition, ectopic abscission was observed at the bases of the pedicel, branches of the inflorescence, and cauline leaves. The silique valves also dehisced prematurely.	O.I.	C.G.	H.G.
103.4	99.9	198.2	At5g40690	834069	-	F:unknown;P:biological_process unknown;C:unknown;OMPFVB	O.I.	C.G.	H.G.
102.5	99.9	43.8	At2g46310	819239	CRF5 (CYTOKININ RESPONSE FACTOR 5)	CRF5 encodes one of the six cytokinin response factors. It is transcriptionally upregulated in response to cytokinin. CRF5 belongs to the AP2/ERF superfamily of the transcriptional factors. CRF proteins rapidly relocalize to the nucleus in response to cytokinin. Analysis of loos-of-function mutants revealed that the CRFs function redundantly to regulate the development of embryos, cotyledons and leaves.	O.I.	C.G.	H.G.
99.5	99.9	68.0	At3g11020	820273	DREB2B (DRE/CRT-BINDING PROTEIN 2B)	encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family (DREB2B). The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A.	O.I.	C.G.	H.G.
98.4	99.9	166.7	At3g25250	822119	AGC2-1 (OXIDATIVE SIGNAL-INDUCIBLE1)	Arabidopsis protein kinase	O.I.	C.G.	H.G.
96.8	99.9	189.2	At1g59590	842249	ZCF37	ZCF37 mRNA, complete cds	O.I.	C.G.	H.G.
94.3	99.9	40.0	At1g61280	842422	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP	O.I.	C.G.	H.G.
90.7	99.9	200.5	At4g22590	828355	trehalose-6-phosphate phosphatase, putative	F:catalytic activity, trehalose-phosphatase activity;P:trehalose biosynthetic process, metabolic process;C:chloroplast;BPMOFA	O.I.	C.G.	H.G.
89.4	99.9	69.2	At2g44070	819013	GTP binding / translation initiation factor	F:GTP binding, translation initiation factor activity;P:translational initiation, cellular metabolic process;C:eukaryotic translation initiation factor 2B complex;OBMFAP	O.I.	C.G.	H.G.
87.8	99.9	42.3	At5g40010	833998	AATP1 (AAA-ATPase 1)	F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;OMBFPAV	O.I.	C.G.	H.G.
86.8	99.9	68.1	At4g04960	825837	lectin protein kinase, putative	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
85.1	99.9	61.0	At4g04490	825779	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
85.0	99.9	47.1	At2g46150	819222	-	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PF	O.I.	C.G.	H.G.
83.6	99.9	138.2	At4g17030	827411	ATEXLB1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE B1)	EXPANSIN-RELATED. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	O.I.	C.G.	H.G.
83.1	99.9	124.7	At5g42830	834294	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
82.4	99.9	393.3	At2g41730	818772	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
81.5	99.9	31.1	At1g55390	841986	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;BOMPFVA	O.I.	C.G.	H.G.
79.0	99.9	55.1	At5g51630	835237	disease resistance protein (TIR-NBS-LRR class), putative	F:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFA	O.I.	C.G.	H.G.
78.8	99.9	40.3	At3g17110	3768803	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
77.9	99.9	17.3	At5g48530	834909	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P	O.I.	C.G.	H.G.
75.8	99.9	92.5	At1g21850	838787	sks8 (SKU5 Similar 8)	F:oxidoreductase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOA	O.I.	C.G.	H.G.
75.8	99.9	32.8	At3g14225	820641	GLIP4	Contains lipase signature motif and GDSL domain.	O.I.	C.G.	H.G.
75.4	99.9	28.2	At4g28110	828927	AtMYB41 (myb domain protein 41)	Member of the R2R3 factor gene family. Expression is induced in response to dessication, ABA and salt treatment. Overexpression of Myb41 results in abnormal cuticle development and decreased cell expansion.	O.I.	C.G.	H.G.
75.2	99.9	18.3	At3g50940	824258	AAA-type ATPase family protein	F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:endomembrane system;BOMFPAV	O.I.	C.G.	H.G.
74.0	99.9	44.2	At5g54230	835511	MYB49 (myb domain protein 49)	Encodes a putative transcription factor (MYB49).	O.I.	C.G.	H.G.
73.5	99.9	68.2	At4g39830	830142	L-ascorbate oxidase, putative	F:oxidoreductase activity, L-ascorbate oxidase activity, copper ion binding;P:oxidation reduction;C:endomembrane system, extracellular region;BFPMOA	O.I.	C.G.	H.G.
72.1	99.9	69.8	At3g48510	824010	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
69.5	99.9	40.0	At1g68690	3767664	ATP binding / protein kinase/ protein serine/threonine kinase	F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast	O.I.	C.G.	H.G.
69.2	99.9	36.3	At2g32930	817855	ZFN2 (ZINC FINGER NUCLEASE 2)	Encodes a zinc finger protein.	O.I.	C.G.	H.G.
69.1	99.9	172.7	At1g10170	837555	ATNFXL1 (ARABIDOPSIS THALIANA NF-X-LIKE 1)	Encodes AtNFXL1, a homologue of the putative human transcription repressor NF-X1. Functions as a negative regulator of the trichothecene phytotoxin-induced defense response.	O.I.	C.G.	H.G.
68.3	99.9	54.8	At3g55740	824740	PROT2 (PROLINE TRANSPORTER 2)	Encodes a proline transporter with affinity for gly betaine, proline, and GABA. Protein is expressed most highly in the roots.	O.I.	C.G.	H.G.
65.8	99.8	88.5	At3g53600	824528	zinc finger (C2H2 type) family protein	F:transcription factor activity, zinc ion binding, nucleic acid binding;P:response to chitin, regulation of transcription;C:intracellular;PMF	O.I.	C.G.	H.G.
65.6	99.8	12.0	At4g11480	826753	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
65.5	99.8	142.6	At3g62260	825399	protein phosphatase 2C, putative / PP2C, putative	F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;MPOFBVA	O.I.	C.G.	H.G.
64.5	99.8	180.9	At4g33550	829494	lipid binding	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
61.5	99.8	160.9	At5g11110	830979	ATSPS2F (SUCROSE PHOSPHATE SYNTHASE 2F)	Encodes a protein with putative sucrose-phosphate synthase activity.Involved in pollen exine formation.	O.I.	C.G.	H.G.
61.3	99.8	54.2	At3g06490	819827	MYB108 (myb domain protein 108)	putative transcription factor MYB108 (MYB108) mRNA,	O.I.	C.G.	H.G.
61.3	99.8	53.3	At5g46910	834736	transcription factor jumonji (jmj) family protein	F:transcription factor activity;P:response to chitin, regulation of transcription;C:nucleus;MFPO	O.I.	C.G.	H.G.
61.2	99.8	82.0	At2g18140	816327	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:cell wall;PFOBM	O.I.	C.G.	H.G.
58.9	99.8	33.9	At2g21900	816726	WRKY59	member of WRKY Transcription Factor; Group II-c	O.I.	C.G.	H.G.
58.4	99.8	45.8	At5g46350	834678	WRKY8	member of WRKY Transcription Factor; Group II-c	O.I.	C.G.	H.G.
58.3	99.8	43.8	At2g26380	817178	disease resistance protein-related / LRR protein-related	F:protein binding;P:signal transduction, defense response;C:endomembrane system;PMOBFAV	O.I.	C.G.	H.G.
58.2	99.8	108.1	At1g05060	839336	unknown protein	F:molecular_function unknown;P:unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
57.4	99.8	125.3	At2g46750	819288	FAD-binding domain-containing protein	F:oxidoreductase activity, D-arabinono-1,4-lactone oxidase activity, FAD binding, catalytic activity;P:unknown;C:membrane;BOPFMA	O.I.	C.G.	H.G.
56.4	99.8	41.8	At5g43380	834356	TOPP6	encodes a type I serine/threonine protein phosphatase expressed in expressed in roots, rosettes and flowers.	O.I.	C.G.	H.G.
56.0	99.8	35.4	At2g25460	817084	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
56.0	99.8	20.6	At5g40990	834101	GLIP1 (GDSL LIPASE1)	Component of plant resistance. Contains lipase signature motif and GDSL domain. Directly interferes with the fungal infection process by acting on fungal cell walls through its action as a antimicrobial compound. Critical component for both local and systemic resistance responses in the incompatible interaction with Alternaria brassicicola in the ethylene-dependent pathway.	O.I.	C.G.	H.G.
55.7	99.8	387.4	At2g05440	815093	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVA	O.I.	C.G.	H.G.
55.5	99.8	17.7	At1g42980	840896	formin homology 2 domain-containing protein / FH2 domain-containing protein	F:actin binding;P:unknown;C:endomembrane system;MPOF	O.I.	C.G.	H.G.
52.9	99.8	58.1	At1g60470	842342	AtGolS4 (Arabidopsis thaliana galactinol synthase 4)	F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:carbohydrate biosynthetic process;C:cellular_component unknown;PMFVBO	O.I.	C.G.	H.G.
52.2	99.8	96.2	At1g71330	843474	ATNAP5	member of NAP subfamily	O.I.	C.G.	H.G.
52.0	99.8	153.6	At5g14730	831325	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB	O.I.	C.G.	H.G.
51.8	99.8	75.9	At2g47520	819365	AP2 domain-containing transcription factor, putative	encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.	O.I.	C.G.	H.G.
51.0	99.8	320.5	At2g38470	818429	WRKY33	Member of the plant WRKY transcription factor family. Regulates the antagonistic relationship between defense pathways mediating responses to P. syringae and necrotrophic fungal pathogens. Located in nucleus. Involved in response to various abiotic stresses - especially salt stress.	O.I.	C.G.	H.G.
50.7	99.8	157.7	At1g14540	838016	anionic peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM	O.I.	C.G.	H.G.

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GSM ID	GSM131329
Assay name	AtGen_6-3621_Saltstress-Roots-24.0h_Rep1
GSE experiment	GSE5623: AtGenExpress: Stress Treatments (Salt stress)

Microarray experiments to specifically-expressed genes

GSM ID GSM131329 Assay name AtGen_6-3621_Saltstress-Roots-24.0h_Rep1 GSE experiment GSE5623: AtGenExpress: Stress Treatments (Salt stress)

GSM ID GSM131329

Assay name AtGen_6-3621_Saltstress-Roots-24.0h_Rep1

GSE experiment GSE5623: AtGenExpress: Stress Treatments (Salt stress)